9-34249836-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249836
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249836
    reference: chr 9
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1143C>T
  hgvsp: ENST00000297661.4:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1251C>T
  hgvsp: ENST00000543944.1:c.1251C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1143C>T
  hgvsp: ENST00000536252.1:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1143C>T
  hgvsp: ENST00000359544.2:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1143C>T
  hgvsp: ENST00000540348.1:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-820C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1335C>T
  hgvsp: ENST00000545103.1:c.1335C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8365
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala445Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

9-34249847-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249847
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249847
    reference: chr 9
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1262T>C
  hgvsp: ENSP00000439806.1:p.Leu421Pro
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1154T>C
  hgvsp: ENSP00000439976.1:p.Leu385Pro
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1154T>C
  hgvsp: ENSP00000352541.2:p.Leu385Pro
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-809T>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1154T>C
  hgvsp: ENSP00000297661.4:p.Leu385Pro
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1154T>C
  hgvsp: ENSP00000440456.1:p.Leu385Pro
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1346T>C
  hgvsp: ENSP00000441024.1:p.Leu449Pro
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu449Pro
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: T
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

9-34249859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249859
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249859
    reference: chr 9
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1166C>T
  hgvsp: ENSP00000439976.1:p.Ser389Phe
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1166C>T
  hgvsp: ENSP00000440456.1:p.Ser389Phe
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1358C>T
  hgvsp: ENSP00000441024.1:p.Ser453Phe
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1274C>T
  hgvsp: ENSP00000439806.1:p.Ser425Phe
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1166C>T
  hgvsp: ENSP00000352541.2:p.Ser389Phe
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1166C>T
  hgvsp: ENSP00000297661.4:p.Ser389Phe
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-797C>T
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4661
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser453Phe
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-34249861-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249861
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249861
    reference: chr 9
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1168C>T
  hgvsp: ENSP00000352541.2:p.Pro390Ser
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1168C>T
  hgvsp: ENSP00000439976.1:p.Pro390Ser
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1276C>T
  hgvsp: ENSP00000439806.1:p.Pro426Ser
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1168C>T
  hgvsp: ENSP00000297661.4:p.Pro390Ser
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1168C>T
  hgvsp: ENSP00000440456.1:p.Pro390Ser
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1360C>T
  hgvsp: ENSP00000441024.1:p.Pro454Ser
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-795C>T
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3614
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8365
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25897
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro454Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-34249864-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249864
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249864
    reference: chr 9
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1363A>C
  hgvsp: ENSP00000441024.1:p.Ser455Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-792A>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1171A>C
  hgvsp: ENSP00000297661.4:p.Ser391Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1171A>C
  hgvsp: ENSP00000352541.2:p.Ser391Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1171A>C
  hgvsp: ENSP00000440456.1:p.Ser391Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1279A>C
  hgvsp: ENSP00000439806.1:p.Ser427Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1171A>C
  hgvsp: ENSP00000439976.1:p.Ser391Arg
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3614
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8364
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4661
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser455Arg
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

9-34249866-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249866
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249866
    reference: chr 9
allele count: 4
allele frequency: 3.294675803900896e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1281C>T
  hgvsp: ENST00000543944.1:c.1281C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1173C>T
  hgvsp: ENST00000540348.1:c.1173C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1173C>T
  hgvsp: ENST00000359544.2:c.1173C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1173C>T
  hgvsp: ENST00000536252.1:c.1173C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1173C>T
  hgvsp: ENST00000297661.4:c.1173C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1365C>T
  hgvsp: ENST00000545103.1:c.1365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-790C>T
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3613
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2429
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10565
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Ser455Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

9-34249867-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249867
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249867
    reference: chr 9
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1174G>A
  hgvsp: ENSP00000439976.1:p.Glu392Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1366G>A
  hgvsp: ENSP00000441024.1:p.Glu456Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-789G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1174G>A
  hgvsp: ENSP00000297661.4:p.Glu392Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1174G>A
  hgvsp: ENSP00000352541.2:p.Glu392Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1282G>A
  hgvsp: ENSP00000439806.1:p.Glu428Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1174G>A
  hgvsp: ENSP00000440456.1:p.Glu392Lys
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13625
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8362
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4660
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu456Lys
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-34249869-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249869
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249869
    reference: chr 9
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-787G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1176G>A
  hgvsp: ENST00000536252.1:c.1176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1176G>A
  hgvsp: ENST00000540348.1:c.1176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1176G>A
  hgvsp: ENST00000297661.4:c.1176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1284G>A
  hgvsp: ENST00000543944.1:c.1284G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1176G>A
  hgvsp: ENST00000359544.2:c.1176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1368G>A
  hgvsp: ENST00000545103.1:c.1368G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu456Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

9-34249870-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249870
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249870
    reference: chr 9
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1369C>T
  hgvsp: ENSP00000441024.1:p.Arg457Trp
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1177C>T
  hgvsp: ENSP00000297661.4:p.Arg393Trp
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1177C>T
  hgvsp: ENSP00000352541.2:p.Arg393Trp
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-786C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1177C>T
  hgvsp: ENSP00000439976.1:p.Arg393Trp
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1177C>T
  hgvsp: ENSP00000440456.1:p.Arg393Trp
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1285C>T
  hgvsp: ENSP00000439806.1:p.Arg429Trp
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4659
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg457Trp
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

9-34249871-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249871
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249871
    reference: chr 9
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1370G>A
  hgvsp: ENSP00000441024.1:p.Arg457Gln
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-785G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1286G>A
  hgvsp: ENSP00000439806.1:p.Arg429Gln
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1178G>A
  hgvsp: ENSP00000352541.2:p.Arg393Gln
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1178G>A
  hgvsp: ENSP00000297661.4:p.Arg393Gln
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1178G>A
  hgvsp: ENSP00000439976.1:p.Arg393Gln
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1178G>A
  hgvsp: ENSP00000440456.1:p.Arg393Gln
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4658
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25905
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2429
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg457Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

9-34249873-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249873
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249873
    reference: chr 9
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1180C>T
  hgvsp: ENSP00000352541.2:p.Gln394Ter
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1180C>T
  hgvsp: ENSP00000297661.4:p.Gln394Ter
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1180C>T
  hgvsp: ENSP00000440456.1:p.Gln394Ter
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1180C>T
  hgvsp: ENSP00000439976.1:p.Gln394Ter
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1372C>T
  hgvsp: ENSP00000441024.1:p.Gln458Ter
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1288C>T
  hgvsp: ENSP00000439806.1:p.Gln430Ter
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-783C>T
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 19514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8362
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln458Ter
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

9-34249882-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249882
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249882
    reference: chr 9
allele count: 46
allele frequency: 3.788752347379172e-4
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-774G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1297G>A
  hgvsp: ENSP00000439806.1:p.Glu433Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1381G>A
  hgvsp: ENSP00000441024.1:p.Glu461Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1189G>A
  hgvsp: ENSP00000440456.1:p.Glu397Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1189G>A
  hgvsp: ENSP00000439976.1:p.Glu397Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1189G>A
  hgvsp: ENSP00000297661.4:p.Glu397Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1189G>A
  hgvsp: ENSP00000352541.2:p.Glu397Lys
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25904
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10573
  bin: 9.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8360
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu461Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

9-34249886-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249886
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249886
    reference: chr 9
allele count: 5
allele frequency: 4.11820907323823e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1301C>T
  hgvsp: ENSP00000439806.1:p.Thr434Met
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1193C>T
  hgvsp: ENSP00000352541.2:p.Thr398Met
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1193C>T
  hgvsp: ENSP00000440456.1:p.Thr398Met
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1193C>T
  hgvsp: ENSP00000297661.4:p.Thr398Met
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1193C>T
  hgvsp: ENSP00000439976.1:p.Thr398Met
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1385C>T
  hgvsp: ENSP00000441024.1:p.Thr462Met
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-770C>T
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19534
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25922
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr462Met
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

9-34249887-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249887
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249887
    reference: chr 9
allele count: 7
allele frequency: 5.765492702533522e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1194G>A
  hgvsp: ENST00000536252.1:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1194G>A
  hgvsp: ENST00000540348.1:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1194G>A
  hgvsp: ENST00000359544.2:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1194G>A
  hgvsp: ENST00000297661.4:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1386G>A
  hgvsp: ENST00000545103.1:c.1386G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1302G>A
  hgvsp: ENST00000543944.1:c.1302G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-769G>A
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4657
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr462Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

9-34249887-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249887
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249887
    reference: chr 9
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1194G>C
  hgvsp: ENST00000297661.4:c.1194G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1194G>C
  hgvsp: ENST00000359544.2:c.1194G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1194G>C
  hgvsp: ENST00000540348.1:c.1194G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1386G>C
  hgvsp: ENST00000545103.1:c.1386G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-769G>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1302G>C
  hgvsp: ENST00000543944.1:c.1302G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1194G>C
  hgvsp: ENST00000536252.1:c.1194G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8370
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr462Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

9-34249905-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249905
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249905
    reference: chr 9
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-751C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1212C>T
  hgvsp: ENST00000536252.1:c.1212C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1212C>T
  hgvsp: ENST00000297661.4:c.1212C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1212C>T
  hgvsp: ENST00000540348.1:c.1212C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1404C>T
  hgvsp: ENST00000545103.1:c.1404C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1212C>T
  hgvsp: ENST00000359544.2:c.1212C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1320C>T
  hgvsp: ENST00000543944.1:c.1320C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10529
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25923
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4656
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr468Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

9-34249907-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249907
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249907
    reference: chr 9
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1322C>T
  hgvsp: ENSP00000439806.1:p.Ser441Leu
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1214C>T
  hgvsp: ENSP00000297661.4:p.Ser405Leu
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-749C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1214C>T
  hgvsp: ENSP00000352541.2:p.Ser405Leu
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1214C>T
  hgvsp: ENSP00000440456.1:p.Ser405Leu
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1214C>T
  hgvsp: ENSP00000439976.1:p.Ser405Leu
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1406C>T
  hgvsp: ENSP00000441024.1:p.Ser469Leu
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10126
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8372
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3415
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser469Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

9-34249908-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249908
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249908
    reference: chr 9
allele count: 9
allele frequency: 7.413264801818721e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1407G>A
  hgvsp: ENST00000545103.1:c.1407G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1215G>A
  hgvsp: ENST00000297661.4:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1215G>A
  hgvsp: ENST00000359544.2:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1215G>A
  hgvsp: ENST00000540348.1:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-748G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1215G>A
  hgvsp: ENST00000536252.1:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1323G>A
  hgvsp: ENST00000543944.1:c.1323G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13631
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3415
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10530
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser469Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum

9-34249911-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249911
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249911
    reference: chr 9
allele count: 10
allele frequency: 8.23696089090969e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1410C>T
  hgvsp: ENST00000545103.1:c.1410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1218C>T
  hgvsp: ENST00000359544.2:c.1218C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1218C>T
  hgvsp: ENST00000540348.1:c.1218C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1218C>T
  hgvsp: ENST00000536252.1:c.1218C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1218C>T
  hgvsp: ENST00000297661.4:c.1218C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1326C>T
  hgvsp: ENST00000543944.1:c.1326C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-745C>T
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10527
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8367
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4654
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr470Tyr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

9-34249912-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249912
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249912
    reference: chr 9
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1219G>A
  hgvsp: ENSP00000439976.1:p.Glu407Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1411G>A
  hgvsp: ENSP00000441024.1:p.Glu471Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1219G>A
  hgvsp: ENSP00000440456.1:p.Glu407Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1219G>A
  hgvsp: ENSP00000352541.2:p.Glu407Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1219G>A
  hgvsp: ENSP00000297661.4:p.Glu407Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1327G>A
  hgvsp: ENSP00000439806.1:p.Glu443Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-744G>A
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4656
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu471Lys
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/9-34249913-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249913
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249913
    reference: chr 9
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1412A>C
  hgvsp: ENSP00000441024.1:p.Glu471Ala
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1220A>C
  hgvsp: ENSP00000297661.4:p.Glu407Ala
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1328A>C
  hgvsp: ENSP00000439806.1:p.Glu443Ala
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1220A>C
  hgvsp: ENSP00000440456.1:p.Glu407Ala
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1220A>C
  hgvsp: ENSP00000352541.2:p.Glu407Ala
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-743A>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1220A>C
  hgvsp: ENSP00000439976.1:p.Glu407Ala
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu471Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

9-34249931-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249931
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249931
    reference: chr 9
allele count: 2
allele frequency: 1.647907980818351e-5
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1238T>C
  hgvsp: ENSP00000439976.1:p.Met413Thr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-725T>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1430T>C
  hgvsp: ENSP00000441024.1:p.Met477Thr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1238T>C
  hgvsp: ENSP00000440456.1:p.Met413Thr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1238T>C
  hgvsp: ENSP00000297661.4:p.Met413Thr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1238T>C
  hgvsp: ENSP00000352541.2:p.Met413Thr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1346T>C
  hgvsp: ENSP00000439806.1:p.Met449Thr
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25889
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10516
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8362
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Met477Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-34249945-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249945
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249945
    reference: chr 9
allele count: 5
allele frequency: 4.123507290360889e-5
allele num: 121256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-711G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1252G>A
  hgvsp: ENSP00000297661.4:p.Glu418Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1252G>A
  hgvsp: ENSP00000439976.1:p.Glu418Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1360G>A
  hgvsp: ENSP00000439806.1:p.Glu454Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1252G>A
  hgvsp: ENSP00000352541.2:p.Glu418Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1444G>A
  hgvsp: ENSP00000441024.1:p.Glu482Lys
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1252G>A
  hgvsp: ENSP00000440456.1:p.Glu418Lys
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3612
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4648
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8334
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3412
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu482Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

9-34249947-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249947
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249947
    reference: chr 9
allele count: 4
allele frequency: 3.298805832288711e-5
allele num: 121256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1254G>A
  hgvsp: ENST00000536252.1:c.1254G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1446G>A
  hgvsp: ENST00000545103.1:c.1446G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1362G>A
  hgvsp: ENST00000543944.1:c.1362G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1254G>A
  hgvsp: ENST00000297661.4:c.1254G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1254G>A
  hgvsp: ENST00000359544.2:c.1254G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1254G>A
  hgvsp: ENST00000540348.1:c.1254G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-709G>A
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4647
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu482Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-34249952-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249952
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249952
    reference: chr 9
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1259T>G
  hgvsp: ENSP00000352541.2:p.Ile420Ser
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1367T>G
  hgvsp: ENSP00000439806.1:p.Ile456Ser
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1259T>G
  hgvsp: ENSP00000439976.1:p.Ile420Ser
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1259T>G
  hgvsp: ENSP00000297661.4:p.Ile420Ser
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-704T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1451T>G
  hgvsp: ENSP00000441024.1:p.Ile484Ser
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1259T>G
  hgvsp: ENSP00000440456.1:p.Ile420Ser
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8326
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25572
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile484Ser
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP

9-34249962-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249962
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249962
    reference: chr 9
allele count: 1
allele frequency: 8.273625337150233e-6
allele num: 120866
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1458+3G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1266+3G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-694G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1266+3G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1266+3G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1266+3G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1374+3G>A
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24808
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3385
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3606
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1458+3G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

9-34249965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249965
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249965
    reference: chr 9
allele count: 162
allele frequency: 1.341970542918206e-3
allele num: 120718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1374+6C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1266+6C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1266+6C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1266+6C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1266+6C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1458+6C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-691C>T
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 13530
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6696
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19160
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10574
  bin: 9.75e1
  variant carriers: 162
genotype quality: GenotypeQuality
  all individuals: 4614
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3594
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1458+6C>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

9-34249966-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249966
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249966
    reference: chr 9
allele count: 5
allele frequency: 4.142296157606084e-5
allele num: 120706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1266+7G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-690G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1374+7G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1266+7G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1266+7G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1266+7G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1458+7G>A
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3601
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24421
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10452
  bin: 9.75e1
  variant carriers: 5
hgvs: c.1458+7G>A
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

9-34249975-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249975
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249975
    reference: chr 9
allele count: 1
allele frequency: 8.31282835672009e-6
allele num: 120296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1266+16G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1266+16G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1266+16G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-681G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1374+16G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1458+16G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1266+16G>A
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2407
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

9-34249976-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249976
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249976
    reference: chr 9
allele count: 33
allele frequency: 2.744647936523778e-4
allele num: 120234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1266+17C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-680C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1458+17C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1266+17C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1266+17C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1266+17C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1374+17C>T
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13394
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18827
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6684
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8120
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4575
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

9-34249983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249983
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249983
    reference: chr 9
allele count: 24
allele frequency: 2.000666888962988e-4
allele num: 119960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1266+24G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1266+24G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-673G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1266+24G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1266+24G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1374+24G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1458+24G>A
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 18159
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13008
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6643
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7739
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4535
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21262
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS

9-34249988-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249988
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249988
    reference: chr 9
allele count: 21
allele frequency: 1.753975678203929e-4
allele num: 119728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1266+29G>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1458+29G>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1374+29G>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1266+29G>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-668G>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1266+29G>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1266+29G>C
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17516
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6757
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10410
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 4470
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7499
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

9-34249990-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249990
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249990
    reference: chr 9
allele count: 1
allele frequency: 8.358408559010364e-6
allele num: 119640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1266+31T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1458+31T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1266+31T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-666T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1266+31T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1374+31T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1266+31T>G
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1660
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4456
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7450
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-34249991-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34249991
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34249991
    reference: chr 9
allele count: 1
allele frequency: 8.366100560528738e-6
allele num: 119530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1266+32C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-665C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1374+32C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1458+32C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1266+32C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1266+32C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1266+32C>T
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4442
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7375
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-34250005-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250005
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250005
    reference: chr 9
allele count: 1
allele frequency: 8.454228805248384e-6
allele num: 118284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1374+46T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1266+46T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1266+46T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1266+46T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-651T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1266+46T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1458+46T>G
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9857
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5674
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

9-34250006-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250006
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250006
    reference: chr 9
allele count: 2
allele frequency: 1.692620176032498e-5
allele num: 118160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1374+47G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-650G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1458+47G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1266+47G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1266+47G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1266+47G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1266+47G>A
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9877
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6989
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2676
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5625
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10783
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

9-34250007-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250007
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250007
    reference: chr 9
allele count: 1
allele frequency: 8.460666362082677e-6
allele num: 118194
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1458+48G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-649G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1374+48G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1266+48G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1266+48G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1266+48G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1266+48G>A
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2823
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5612
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

9-34250007-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250007
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250007
    reference: chr 9
allele count: 4
allele frequency: 3.384266544833071e-5
allele num: 118194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1266+48G>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1374+48G>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1266+48G>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1266+48G>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1458+48G>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-649G>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1266+48G>T
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10155
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12137
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10355
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2823
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

9-34250009-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250009
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250009
    reference: chr 9
allele count: 1
allele frequency: 8.472709403012895e-6
allele num: 118026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1266+50G>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1374+50G>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-647G>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1266+50G>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1266+50G>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1266+50G>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1458+50G>T
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3627
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3879
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-34250011-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250011
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250011
    reference: chr 9
allele count: 1
allele frequency: 8.482483671218934e-6
allele num: 117890
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1266+52A>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1374+52A>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1266+52A>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1266+52A>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1458+52A>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-645A>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1266+52A>G
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9318
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10702
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3871
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10354
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1912
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4042
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5509
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

9-34250606-GCACAGCAAAGAGCAGCAGTA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250606
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250586
    reference: chr 9
allele count: 1
allele frequency: 8.59963537546008e-6
allele num: 116284
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23060
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33227
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2575
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: GCACAGCAAAGAGCAGCAGTA
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ

9-34250607-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250607
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250607
    reference: chr 9
allele count: 1
allele frequency: 8.602594542514021e-6
allele num: 116244
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1459-49C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-49C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1267-49C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1267-49C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1267-49C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1375-49C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1267-49C>T
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23178
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6953
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34353
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD

9-34250610-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250610
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250610
    reference: chr 9
allele count: 1
allele frequency: 8.583690987124463e-6
allele num: 116500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1267-46A>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1267-46A>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1459-46A>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1267-46A>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-46A>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1267-46A>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1375-46A>G
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2576
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5755
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/9-34250615-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250615
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250615
    reference: chr 9
allele count: 2
allele frequency: 1.712328767123288e-5
allele num: 116800
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-41A>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1375-41A>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1267-41A>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1267-41A>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1459-41A>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1267-41A>C
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1267-41A>C
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18023
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/9-34250622-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250622
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250622
    reference: chr 9
allele count: 1
allele frequency: 8.552125203112974e-6
allele num: 116930
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1267-34C>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-34C>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1267-34C>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1459-34C>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1267-34C>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1267-34C>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1375-34C>A
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

9-34250624-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250624
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250624
    reference: chr 9
allele count: 1
allele frequency: 8.533005665915763e-6
allele num: 117192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-32G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1267-32G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1375-32G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1267-32G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1267-32G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1459-32G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1267-32G>A
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-34250630-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250630
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250630
    reference: chr 9
allele count: 23
allele frequency: 1.952627557517616e-4
allele num: 117790
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1375-26G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1459-26G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1267-26G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-26G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1267-26G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1267-26G>A
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1267-26G>A
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22860
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25413
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

9-34250632-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250632
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250632
    reference: chr 9
allele count: 1
allele frequency: 8.463244130740195e-6
allele num: 118158
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1267-24T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1267-24T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-24T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1375-24T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1459-24T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1267-24T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1267-24T>G
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47050
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6044
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD

9-34250639-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250639
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250639
    reference: chr 9
allele count: 3
allele frequency: 2.518045996306866e-5
allele num: 119140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1267-17C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1267-17C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1375-17C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1267-17C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1267-17C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-17C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1459-17C>T
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24641
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48719
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

9-34250646-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250646
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250646
    reference: chr 9
allele count: 1
allele frequency: 8.342231713828083e-6
allele num: 119872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1267-10C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1375-10C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1459-10C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1267-10C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-10C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1267-10C>T
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1267-10C>T
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

9-34250650-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250650
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250650
    reference: chr 9
allele count: 2
allele frequency: 1.663782776520698e-5
allele num: 120208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1267-6T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084-6T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1459-6T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1267-6T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1267-6T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1267-6T>G
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1375-6T>G
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6249
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1459-6T>G
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

9-34250656-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250656
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250656
    reference: chr 9
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1084A>G
  hgvsp: ENSP00000368484.3:p.Ile362Val
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1267A>G
  hgvsp: ENSP00000352541.2:p.Ile423Val
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1267A>G
  hgvsp: ENSP00000439976.1:p.Ile423Val
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1459A>G
  hgvsp: ENSP00000441024.1:p.Ile487Val
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1375A>G
  hgvsp: ENSP00000439806.1:p.Ile459Val
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1267A>G
  hgvsp: ENSP00000297661.4:p.Ile423Val
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1267A>G
  hgvsp: ENSP00000440456.1:p.Ile423Val
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26584
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50986
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile487Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

9-34250657-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250657
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250657
    reference: chr 9
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1460T>A
  hgvsp: ENSP00000441024.1:p.Ile487Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1268T>A
  hgvsp: ENSP00000297661.4:p.Ile423Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1268T>A
  hgvsp: ENSP00000352541.2:p.Ile423Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1268T>A
  hgvsp: ENSP00000440456.1:p.Ile423Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1085T>A
  hgvsp: ENSP00000368484.3:p.Ile362Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1376T>A
  hgvsp: ENSP00000439806.1:p.Ile459Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1268T>A
  hgvsp: ENSP00000439976.1:p.Ile423Asn
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26297
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51094
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile487Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

9-34250661-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250661
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250661
    reference: chr 9
allele count: 3
allele frequency: 2.48032277267015e-5
allele num: 120952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1272C>T
  hgvsp: ENST00000540348.1:c.1272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1380C>T
  hgvsp: ENST00000543944.1:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1464C>T
  hgvsp: ENST00000545103.1:c.1464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1272C>T
  hgvsp: ENST00000359544.2:c.1272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1272C>T
  hgvsp: ENST00000297661.4:c.1272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1272C>T
  hgvsp: ENST00000536252.1:c.1272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1089C>T
  hgvsp: ENST00000379186.4:c.1089C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu488Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

9-34250662-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250662
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250662
    reference: chr 9
allele count: 3
allele frequency: 2.478724283235561e-5
allele num: 121030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1273G>A
  hgvsp: ENSP00000439976.1:p.Asp425Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1273G>A
  hgvsp: ENSP00000440456.1:p.Asp425Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1273G>A
  hgvsp: ENSP00000297661.4:p.Asp425Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1465G>A
  hgvsp: ENSP00000441024.1:p.Asp489Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1090G>A
  hgvsp: ENSP00000368484.3:p.Asp364Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1381G>A
  hgvsp: ENSP00000439806.1:p.Asp461Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1273G>A
  hgvsp: ENSP00000352541.2:p.Asp425Asn
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51358
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp489Asn
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-34250670-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250670
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250670
    reference: chr 9
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1281C>A
  hgvsp: ENST00000297661.4:c.1281C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1281C>A
  hgvsp: ENST00000540348.1:c.1281C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1098C>A
  hgvsp: ENST00000379186.4:c.1098C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1389C>A
  hgvsp: ENST00000543944.1:c.1389C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1281C>A
  hgvsp: ENST00000536252.1:c.1281C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1281C>A
  hgvsp: ENST00000359544.2:c.1281C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1473C>A
  hgvsp: ENST00000545103.1:c.1473C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6334
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu491Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-34250671-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250671
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250671
    reference: chr 9
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1099T>A
  hgvsp: ENSP00000368484.3:p.Phe367Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1282T>A
  hgvsp: ENSP00000440456.1:p.Phe428Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1474T>A
  hgvsp: ENSP00000441024.1:p.Phe492Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1282T>A
  hgvsp: ENSP00000352541.2:p.Phe428Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1390T>A
  hgvsp: ENSP00000439806.1:p.Phe464Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1282T>A
  hgvsp: ENSP00000439976.1:p.Phe428Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1282T>A
  hgvsp: ENSP00000297661.4:p.Phe428Ile
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe492Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

9-34250679-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250679
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250679
    reference: chr 9
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1290T>C
  hgvsp: ENST00000536252.1:c.1290T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1290T>C
  hgvsp: ENST00000297661.4:c.1290T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1290T>C
  hgvsp: ENST00000540348.1:c.1290T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1398T>C
  hgvsp: ENST00000543944.1:c.1398T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1107T>C
  hgvsp: ENST00000379186.4:c.1107T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1482T>C
  hgvsp: ENST00000545103.1:c.1482T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1290T>C
  hgvsp: ENST00000359544.2:c.1290T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6352
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His494His
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

9-34250691-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250691
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250691
    reference: chr 9
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1302T>C
  hgvsp: ENST00000536252.1:c.1302T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1302T>C
  hgvsp: ENST00000359544.2:c.1302T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1494T>C
  hgvsp: ENST00000545103.1:c.1494T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1119T>C
  hgvsp: ENST00000379186.4:c.1119T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1302T>C
  hgvsp: ENST00000540348.1:c.1302T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1302T>C
  hgvsp: ENST00000297661.4:c.1302T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1410T>C
  hgvsp: ENST00000543944.1:c.1410T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6360
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys498Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

9-34250696-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250696
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250696
    reference: chr 9
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1307A>G
  hgvsp: ENSP00000297661.4:p.Lys436Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1307A>G
  hgvsp: ENSP00000440456.1:p.Lys436Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1499A>G
  hgvsp: ENSP00000441024.1:p.Lys500Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1307A>G
  hgvsp: ENSP00000439976.1:p.Lys436Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1307A>G
  hgvsp: ENSP00000352541.2:p.Lys436Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1415A>G
  hgvsp: ENSP00000439806.1:p.Lys472Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1124A>G
  hgvsp: ENSP00000368484.3:p.Lys375Arg
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6410
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26975
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys500Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

9-34250697-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250697
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250697
    reference: chr 9
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1308G>A
  hgvsp: ENST00000297661.4:c.1308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1308G>A
  hgvsp: ENST00000540348.1:c.1308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1308G>A
  hgvsp: ENST00000536252.1:c.1308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1125G>A
  hgvsp: ENST00000379186.4:c.1125G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1500G>A
  hgvsp: ENST00000545103.1:c.1500G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1416G>A
  hgvsp: ENST00000543944.1:c.1416G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1308G>A
  hgvsp: ENST00000359544.2:c.1308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys500Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

9-34250700-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250700
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250700
    reference: chr 9
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1419C>T
  hgvsp: ENST00000543944.1:c.1419C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1311C>T
  hgvsp: ENST00000536252.1:c.1311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1311C>T
  hgvsp: ENST00000540348.1:c.1311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1311C>T
  hgvsp: ENST00000359544.2:c.1311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1503C>T
  hgvsp: ENST00000545103.1:c.1503C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1128C>T
  hgvsp: ENST00000379186.4:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1311C>T
  hgvsp: ENST00000297661.4:c.1311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6357
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly501Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

9-34250703-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250703
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250703
    reference: chr 9
allele count: 8
allele frequency: 6.593153010598494e-5
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1506C>T
  hgvsp: ENST00000545103.1:c.1506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1131C>T
  hgvsp: ENST00000379186.4:c.1131C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1314C>T
  hgvsp: ENST00000540348.1:c.1314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1422C>T
  hgvsp: ENST00000543944.1:c.1422C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1314C>T
  hgvsp: ENST00000297661.4:c.1314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1314C>T
  hgvsp: ENST00000536252.1:c.1314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1314C>T
  hgvsp: ENST00000359544.2:c.1314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe502Phe
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

9-34250704-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250704
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250704
    reference: chr 9
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1132G>A
  hgvsp: ENSP00000368484.3:p.Asp378Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1423G>A
  hgvsp: ENSP00000439806.1:p.Asp475Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1315G>A
  hgvsp: ENSP00000352541.2:p.Asp439Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1507G>A
  hgvsp: ENSP00000441024.1:p.Asp503Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1315G>A
  hgvsp: ENSP00000297661.4:p.Asp439Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1315G>A
  hgvsp: ENSP00000439976.1:p.Asp439Asn
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1315G>A
  hgvsp: ENSP00000440456.1:p.Asp439Asn
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp503Asn
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/9-34250710-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250710
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250710
    reference: chr 9
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1321C>A
  hgvsp: ENSP00000297661.4:p.Leu441Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1429C>A
  hgvsp: ENSP00000439806.1:p.Leu477Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1321C>A
  hgvsp: ENSP00000352541.2:p.Leu441Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1321C>A
  hgvsp: ENSP00000439976.1:p.Leu441Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1138C>A
  hgvsp: ENSP00000368484.3:p.Leu380Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1321C>A
  hgvsp: ENSP00000440456.1:p.Leu441Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1513C>A
  hgvsp: ENSP00000441024.1:p.Leu505Ile
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu505Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP

9-34250710-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250710
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250710
    reference: chr 9
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1321C>T
  hgvsp: ENSP00000440456.1:p.Leu441Phe
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1138C>T
  hgvsp: ENSP00000368484.3:p.Leu380Phe
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1513C>T
  hgvsp: ENSP00000441024.1:p.Leu505Phe
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1321C>T
  hgvsp: ENSP00000352541.2:p.Leu441Phe
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1321C>T
  hgvsp: ENSP00000439976.1:p.Leu441Phe
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1429C>T
  hgvsp: ENSP00000439806.1:p.Leu477Phe
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1321C>T
  hgvsp: ENSP00000297661.4:p.Leu441Phe
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51610
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu505Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

9-34250721-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250721
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250721
    reference: chr 9
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1524A>G
  hgvsp: ENST00000545103.1:c.1524A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1332A>G
  hgvsp: ENST00000540348.1:c.1332A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1332A>G
  hgvsp: ENST00000297661.4:c.1332A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1149A>G
  hgvsp: ENST00000379186.4:c.1149A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1332A>G
  hgvsp: ENST00000536252.1:c.1332A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1332A>G
  hgvsp: ENST00000359544.2:c.1332A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1440A>G
  hgvsp: ENST00000543944.1:c.1440A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu508Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

9-34250736-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250736
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250736
    reference: chr 9
allele count: 5
allele frequency: 4.135102054318701e-5
allele num: 120916
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1455G>C
  hgvsp: ENSP00000439806.1:p.Met485Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1539G>C
  hgvsp: ENSP00000441024.1:p.Met513Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1347G>C
  hgvsp: ENSP00000439976.1:p.Met449Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1347G>C
  hgvsp: ENSP00000352541.2:p.Met449Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1347G>C
  hgvsp: ENSP00000440456.1:p.Met449Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1347G>C
  hgvsp: ENSP00000297661.4:p.Met449Ile
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1164G>C
  hgvsp: ENSP00000368484.3:p.Met388Ile
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6333
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met513Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

9-34250737-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250737
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250737
    reference: chr 9
allele count: 1
allele frequency: 8.278831029058698e-6
allele num: 120790
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1540C>T
  hgvsp: ENSP00000441024.1:p.His514Tyr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1348C>T
  hgvsp: ENSP00000439976.1:p.His450Tyr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1348C>T
  hgvsp: ENSP00000297661.4:p.His450Tyr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1348C>T
  hgvsp: ENSP00000440456.1:p.His450Tyr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1165C>T
  hgvsp: ENSP00000368484.3:p.His389Tyr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1456C>T
  hgvsp: ENSP00000439806.1:p.His486Tyr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1348C>T
  hgvsp: ENSP00000352541.2:p.His450Tyr
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His514Tyr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

9-34250739-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250739
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250739
    reference: chr 9
allele count: 3
allele frequency: 2.483896073788273e-5
allele num: 120778
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1350C>T
  hgvsp: ENST00000536252.1:c.1350C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1542C>T
  hgvsp: ENST00000545103.1:c.1542C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1350C>T
  hgvsp: ENST00000359544.2:c.1350C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1350C>T
  hgvsp: ENST00000297661.4:c.1350C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1167C>T
  hgvsp: ENST00000379186.4:c.1167C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1458C>T
  hgvsp: ENST00000543944.1:c.1458C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1350C>T
  hgvsp: ENST00000540348.1:c.1350C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His514His
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

9-34250743-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250743
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250743
    reference: chr 9
allele count: 1
allele frequency: 8.290361625574107e-6
allele num: 120622
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1354T>C
  hgvsp: ENSP00000297661.4:p.Cys452Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1171T>C
  hgvsp: ENSP00000368484.3:p.Cys391Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1462T>C
  hgvsp: ENSP00000439806.1:p.Cys488Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1354T>C
  hgvsp: ENSP00000352541.2:p.Cys452Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1354T>C
  hgvsp: ENSP00000439976.1:p.Cys452Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1546T>C
  hgvsp: ENSP00000441024.1:p.Cys516Arg
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1354T>C
  hgvsp: ENSP00000440456.1:p.Cys452Arg
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6317
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50690
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys516Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

9-34250744-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34250744
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 34250744
    reference: chr 9
allele count: 1
allele frequency: 8.293799555452344e-6
allele num: 120572
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000368484
  ensembl transcript: ENST00000379186
  gene symbol: UBAP1
  hgvsc: ENST00000379186.4:c.1172G>A
  hgvsp: ENSP00000368484.3:p.Cys391Tyr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439976
  ensembl transcript: ENST00000540348
  gene symbol: UBAP1
  hgvsc: ENST00000540348.1:c.1355G>A
  hgvsp: ENSP00000439976.1:p.Cys452Tyr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000352541
  ensembl transcript: ENST00000359544
  gene symbol: UBAP1
  hgvsc: ENST00000359544.2:c.1355G>A
  hgvsp: ENSP00000352541.2:p.Cys452Tyr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000441024
  ensembl transcript: ENST00000545103
  gene symbol: UBAP1
  hgvsc: ENST00000545103.1:c.1547G>A
  hgvsp: ENSP00000441024.1:p.Cys516Tyr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000297661
  ensembl transcript: ENST00000297661
  gene symbol: UBAP1
  hgvsc: ENST00000297661.4:c.1355G>A
  hgvsp: ENSP00000297661.4:p.Cys452Tyr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000440456
  ensembl transcript: ENST00000536252
  gene symbol: UBAP1
  hgvsc: ENST00000536252.1:c.1355G>A
  hgvsp: ENSP00000440456.1:p.Cys452Tyr
  variant of: http://identifiers.org/hgnc/12461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165006
  ensembl protein: ENSP00000439806
  ensembl transcript: ENST00000543944
  gene symbol: UBAP1
  hgvsc: ENST00000543944.1:c.1463G>A
  hgvsp: ENSP00000439806.1:p.Cys488Tyr
  variant of: http://identifiers.org/hgnc/12461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26975
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Cys516Tyr
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 4661
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10568
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1753
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3616
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.22e-1

DP
type: SiteQuality
SIO_000300: 2.027332e6

QD
type: SiteQuality
SIO_000300: 1.391e1

FS
type: SiteQuality
SIO_000300: 2.457e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

VQSLOD
type: SiteQuality
SIO_000300: 7.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.49e-1

GenotypeQuality
all individuals: 25897
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8363
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.116e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.949e0

MQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.92e-1

DP
type: SiteQuality
SIO_000300: 2.027278e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.75e-1

QD
type: SiteQuality
SIO_000300: 1.241e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2427
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8364
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3416
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.76e0

DP
type: SiteQuality
SIO_000300: 2.027129e6

VQSLOD
type: SiteQuality
SIO_000300: -1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

FS
type: SiteQuality
SIO_000300: 8.669e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.044e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3415
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

FS
type: SiteQuality
SIO_000300: 4.505e0

VQSLOD
type: SiteQuality
SIO_000300: 6.929999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.115e1

DP
type: SiteQuality
SIO_000300: 2.027289e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25896
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.3e-1

QD
type: SiteQuality
SIO_000300: 1.216e1

FS
type: SiteQuality
SIO_000300: 4.443e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.047e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.02e-1

DP
type: SiteQuality
SIO_000300: 2.027325e6

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.942e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.25e-1

FS
type: SiteQuality
SIO_000300: 2.47e0

DP
type: SiteQuality
SIO_000300: 2.027309e6

QD
type: SiteQuality
SIO_000300: 1.128e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

MQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 25902
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495190146543199e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.58e-1

DP
type: SiteQuality
SIO_000300: 2.027316e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.097e0

QD
type: SiteQuality
SIO_000300: 1.326e1

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
SIO_000300: 8.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.34e1

VQSLOD
type: SiteQuality
SIO_000300: -2.201e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.7072e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.946e0

MQRankSum
type: SiteQuality
SIO_000300: -5.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.157e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.027067e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
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allele num: 16512
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African
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QD
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FS
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DP
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MQ
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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VQSLOD
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FS
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QD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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SIO_000300: -1.0e-4

DP
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ClippingRankSum
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SIO_000300: -1.904e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 5.199907557198983e-3
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South Asian
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele num: 908
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BaseQRankSum
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SIO_000300: -4.166e0

FS
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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DP
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SIO_000300: 2.030639e6

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.491759065028469e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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East Asian
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African
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Other
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Latino
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MQRankSum
type: SiteQuality
SIO_000300: 4.83e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

FS
type: SiteQuality
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DP
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VQSLOD
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BaseQRankSum
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SIO_000300: 1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
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allele num: 16512
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Latino
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allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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MQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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ReadPosRankSum
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FS
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DP
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BaseQRankSum
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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Latino
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African
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Other
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European (Non-Finnish)
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ClippingRankSum
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MQRankSum
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FS
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DP
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QD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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Other
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African
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South Asian
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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MQRankSum
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MQ
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QD
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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Other
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European (Finnish)
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Latino
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European (Non-Finnish)
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QD
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MQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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Other
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East Asian
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQ
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BaseQRankSum
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SIO_000300: -1.12e0

FS
type: SiteQuality
SIO_000300: 1.808e0

QD
type: SiteQuality
SIO_000300: 1.381e1

DP
type: SiteQuality
SIO_000300: 2.026359e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
bin: 4.25e1
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GenotypeQuality
all individuals: 3415
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.882952142994427e-4
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.679e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.049e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.24e-1

FS
type: SiteQuality
SIO_000300: 5.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.812e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.922e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQ
type: SiteQuality
SIO_000300: 5.923e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

DP
type: SiteQuality
SIO_000300: 2.025662e6

FS
type: SiteQuality
SIO_000300: 9.356999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.92e-1

QD
type: SiteQuality
SIO_000300: 1.41e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.998500749625187e-5
allele num: 66700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-1

DP
type: SiteQuality
SIO_000300: 2.024885e6

QD
type: SiteQuality
SIO_000300: 1.247e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.258e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 1.905e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.001140216641162e-5
allele num: 66654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

QD
type: SiteQuality
SIO_000300: 1.296e1

DP
type: SiteQuality
SIO_000300: 2.02309e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.243e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.883506343713956e-4
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.99e-1

FS
type: SiteQuality
SIO_000300: 2.167e0

DP
type: SiteQuality
SIO_000300: 2.022971e6

VQSLOD
type: SiteQuality
SIO_000300: 1.73e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.409e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.63e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.79e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.02098e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.13e-1

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.012029e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 5
allele frequency: 4.809542131589073e-4
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.518372304889159e-4
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.444444444444444e-3
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 124
allele frequency: 1.864829909465516e-3
allele num: 66494
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 28
allele frequency: 2.425082279577343e-3
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.01255e6

BaseQRankSum
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

FS
type: SiteQuality
SIO_000300: 1.474e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.015218502812114e-5
allele num: 66498
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.006073e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.431e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.23e-1

FS
type: SiteQuality
SIO_000300: 1.349e0

VQSLOD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

GenotypeQuality
all individuals: 4588
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23079
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.25e1
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GenotypeQuality
all individuals: 8067
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507022725902707e-5
allele num: 66356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.469e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

DP
type: SiteQuality
SIO_000300: 1.988856e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.853e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

GenotypeQuality
all individuals: 2402
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 33

GenotypeQuality
all individuals: 3574
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GenotypeQuality
all individuals: 1729
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.198405822214521e-4
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 25
allele frequency: 2.406159769008662e-3
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014408874419726e-5
allele num: 66348
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.989176e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.415e0

FS
type: SiteQuality
SIO_000300: 1.538e0

VQSLOD
type: SiteQuality
SIO_000300: 2.9e0

QD
type: SiteQuality
SIO_000300: 1.323e1

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e-1

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 24

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3551
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.63020030816641e-5
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 22
allele frequency: 2.549837737598517e-3
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.357279084551812e-5
allele num: 15730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66242
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.81e-1

QD
type: SiteQuality
SIO_000300: 1.346e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.963459e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3190
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3527
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1713
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20005
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.058041112454655e-4
allele num: 66160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.735809755250825e-4
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.687379884689302e-4
allele num: 15610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.944188e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-2

QD
type: SiteQuality
SIO_000300: 1.552e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.79e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

MQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-2

GenotypeQuality
all individuals: 99
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3509
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variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 173
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variant carriers: 0

GenotypeQuality
all individuals: 19840
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2376
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variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
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variant carriers: 0

GenotypeQuality
all individuals: 10388
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512127260630255e-5
allele num: 66132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.01e0

MQRankSum
type: SiteQuality
SIO_000300: -1.345e0

FS
type: SiteQuality
SIO_000300: 3.09e0

VQSLOD
type: SiteQuality
SIO_000300: -3.87e-2

QD
type: SiteQuality
SIO_000300: 1.325e1

DP
type: SiteQuality
SIO_000300: 1.938071e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-2

GenotypeQuality
all individuals: 1703
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19387
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variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66098
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.641342074816814e-5
allele num: 10372
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.906e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.148e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.932479e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

VQSLOD
type: SiteQuality
SIO_000300: -2.361e0

QD
type: SiteQuality
SIO_000300: 1.728e1

MQRankSum
type: SiteQuality
SIO_000300: 2.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.361e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

GenotypeQuality
all individuals: 3400
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 10357
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2685
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.750371270419872e-5
allele num: 14814
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.55e1

DP
type: SiteQuality
SIO_000300: 1.84782e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1497
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
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variant carriers: 0

GenotypeQuality
all individuals: 1882
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1682
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GenotypeQuality
all individuals: 2399
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166316771635176e-4
allele num: 8574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.756756756756757e-5
allele num: 14800
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.066e0

DP
type: SiteQuality
SIO_000300: 1.846925e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.087e0

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.186e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 3403
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 2899
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3678
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variant carriers: 0

GenotypeQuality
all individuals: 10355
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523554147114388e-5
allele num: 65636
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0365e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.331e0

DP
type: SiteQuality
SIO_000300: 1.844341e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.26e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.71e-1

GenotypeQuality
all individuals: 239
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2899
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5612
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1896
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10486
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3678
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3403
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.094216588457554e-5
allele num: 65636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.331e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

DP
type: SiteQuality
SIO_000300: 1.844341e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.0365e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 1.26e1

GenotypeQuality
all individuals: 231
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3151
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3389
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10349
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5538
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9365
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524343770007012e-5
allele num: 65602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 1.840528e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.45e1

MQRankSum
type: SiteQuality
SIO_000300: -6.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.614e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

GenotypeQuality
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7968
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4201
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3167
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.83433570256971e-5
allele num: 14632
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.052e0

DP
type: SiteQuality
SIO_000300: 1.839134e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 1.354e1

VQSLOD
type: SiteQuality
SIO_000300: 6.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

GenotypeQuality
all individuals: 165
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 469
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1430
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6049
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2806
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64834
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.849557522123894e-5
allele num: 11300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.71e-1

DP
type: SiteQuality
SIO_000300: 1.402273e6

MQRankSum
type: SiteQuality
SIO_000300: -2.635e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 4.028e0

QD
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 5.452e1

GenotypeQuality
all individuals: 138
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1419
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2793
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2571
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6041
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2274
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541069502234551e-5
allele num: 64890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.258e0

VQSLOD
type: SiteQuality
SIO_000300: -2.491e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.105e0

DP
type: SiteQuality
SIO_000300: 1.403268e6

QD
type: SiteQuality
SIO_000300: 8.91e0

GenotypeQuality
all individuals: 152
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
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variant carriers: 0

GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
all individuals: 1496
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variant carriers: 0

GenotypeQuality
all individuals: 34567
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variant carriers: 0

GenotypeQuality
all individuals: 2376
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540072691431036e-5
allele num: 64932
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.144e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.668e0

MQ
type: SiteQuality
SIO_000300: 5.879e1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.127e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.407505e6

VQSLOD
type: SiteQuality
SIO_000300: -4.851e-1

GenotypeQuality
all individuals: 887
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 39424
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5782
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2548
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.074747102050856e-5
allele num: 65046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.126e1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

DP
type: SiteQuality
SIO_000300: 1.423394e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

GenotypeQuality
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2524
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 833
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42682
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5798
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.84931506849315e-5
allele num: 14600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.079e0

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.531e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.938e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.556e0

QD
type: SiteQuality
SIO_000300: 1.13e1

DP
type: SiteQuality
SIO_000300: 1.448173e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 43868
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5868
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 150
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1825
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183151916706105e-4
allele num: 8452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14730
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.937e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.456782e6

QD
type: SiteQuality
SIO_000300: 1.262e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.51e-1

GenotypeQuality
all individuals: 1198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46248
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
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GenotypeQuality
all individuals: 826
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5985
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 23
allele frequency: 2.292663476874003e-3
allele num: 10032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14928
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.481563e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.559e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.8e0

QD
type: SiteQuality
SIO_000300: 1.221e1

GenotypeQuality
all individuals: 645
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524762137106611e-5
allele num: 65584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.525e0

DP
type: SiteQuality
SIO_000300: 1.48863e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.186e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 1.504e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 403
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.449116471043467e-5
allele num: 15506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.032140691328078e-5
allele num: 65960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.509798e6

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.38e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 5.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.053e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.04e-1

QD
type: SiteQuality
SIO_000300: 1.489e1

GenotypeQuality
all individuals: 1159
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15860
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

FS
type: SiteQuality
SIO_000300: 8.233000000000001e0

DP
type: SiteQuality
SIO_000300: 1.523448e6

QD
type: SiteQuality
SIO_000300: 1.694e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.093e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
all individuals: 164
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50428
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1170
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variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508159140952553e-5
allele num: 66306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.666e1

VQSLOD
type: SiteQuality
SIO_000300: -2.023e-1

DP
type: SiteQuality
SIO_000300: 1.528796e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 1.548e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

GenotypeQuality
all individuals: 105
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 6289
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GenotypeQuality
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GenotypeQuality
all individuals: 103
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GenotypeQuality
all individuals: 79
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 1178
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.714396735962697e-5
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.315e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

FS
type: SiteQuality
SIO_000300: 2.744e0

DP
type: SiteQuality
SIO_000300: 1.536171e6

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

QD
type: SiteQuality
SIO_000300: 1.453e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.22e0

VQSLOD
type: SiteQuality
SIO_000300: 6.5e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 878
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GenotypeQuality
all individuals: 297
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.136475208640157e-5
allele num: 16296
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.8e-1

DP
type: SiteQuality
SIO_000300: 1.536938e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.263e0

QD
type: SiteQuality
SIO_000300: 1.62e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.733102253032929e-4
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.99e-1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.540605e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e-1

QD
type: SiteQuality
SIO_000300: 1.28e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 881
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.217878455730118e-4
allele num: 16422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

VQSLOD
type: SiteQuality
SIO_000300: 3.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

FS
type: SiteQuality
SIO_000300: 3.808e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.15e1

DP
type: SiteQuality
SIO_000300: 1.541494e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.97e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

DP
type: SiteQuality
SIO_000300: 1.543694e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.716e0

QD
type: SiteQuality
SIO_000300: 1.573e1

VQSLOD
type: SiteQuality
SIO_000300: -8.452e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.73e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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MQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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VQSLOD
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DP
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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MQ
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ReadPosRankSum
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MQRankSum
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FS
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VQSLOD
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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Latino
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Other
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South Asian
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QD
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MQ
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FS
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ReadPosRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66708
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQ
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VQSLOD
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BaseQRankSum
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FS
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MQRankSum
type: SiteQuality
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele num: 8654
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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InbreedingCoeff
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VQSLOD
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QD
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MQRankSum
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MQ
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FS
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

Other
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allele num: 908
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East Asian
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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FS
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
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DP
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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Other
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African
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allele num: 10384
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South Asian
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European (Non-Finnish)
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allele frequency: 1.049349403369911e-4
allele num: 66708
num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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BaseQRankSum
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FS
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QD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Latino
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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ClippingRankSum
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MQ
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Other
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Latino
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European (Non-Finnish)
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East Asian
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African
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South Asian
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MQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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FS
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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African
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Latino
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European (Finnish)
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Other
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BaseQRankSum
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SIO_000300: -3.222e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

VQSLOD
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InbreedingCoeff
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.109e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16496
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Latino
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allele frequency: 0.0e0
allele num: 11562
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African
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allele frequency: 0.0e0
allele num: 10346
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -6.37e-1

MQ
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8642
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
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Latino
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allele frequency: 3.477656059815684e-4
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European (Non-Finnish)
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allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.8e-2

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.540133e6

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.946e1

QD
type: SiteQuality
SIO_000300: 1.376e1

FS
type: SiteQuality
SIO_000300: 4.019e0

VQSLOD
type: SiteQuality
SIO_000300: 8.7e-1

ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 0.0e0
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Latino
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Other
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European (Finnish)
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.509379509379509e-5
allele num: 66528
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DP
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.314e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6596
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South Asian
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Other
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East Asian
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Latino
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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MQRankSum
type: SiteQuality
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QD
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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MQ
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ClippingRankSum
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