http://identifiers.org/exac.variant/10-29782253-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782253
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782253
    reference: chr 10
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.651T>G
  hgvsp: ENSP00000445472.1:p.Asp217Glu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3909T>G
  hgvsp: ENSP00000364547.2:p.Asp1303Glu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.339T>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.285T>G
  hgvsp: ENSP00000440343.1:p.Asp95Glu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3909T>G
  hgvsp: ENSP00000348128.4:p.Asp1303Glu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2631T>G
  hgvsp: ENSP00000364549.3:p.Asp877Glu
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51921
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp1303Glu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP

10-29782257-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782257
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782257
    reference: chr 10
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.647C>A
  hgvsp: ENSP00000445472.1:p.Pro216Gln
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.335C>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3905C>A
  hgvsp: ENSP00000348128.4:p.Pro1302Gln
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3905C>A
  hgvsp: ENSP00000364547.2:p.Pro1302Gln
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2627C>A
  hgvsp: ENSP00000364549.3:p.Pro876Gln
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.281C>A
  hgvsp: ENSP00000440343.1:p.Pro94Gln
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3877
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro1302Gln
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-29782258-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782258
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782258
    reference: chr 10
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.334C>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2626C>A
  hgvsp: ENSP00000364549.3:p.Pro876Thr
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.280C>A
  hgvsp: ENSP00000440343.1:p.Pro94Thr
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3904C>A
  hgvsp: ENSP00000348128.4:p.Pro1302Thr
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.646C>A
  hgvsp: ENSP00000445472.1:p.Pro216Thr
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3904C>A
  hgvsp: ENSP00000364547.2:p.Pro1302Thr
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52025
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro1302Thr
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum

10-29782267-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782267
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782267
    reference: chr 10
allele count: 4
allele frequency: 3.298207424264912e-5
allele num: 121278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.271G>C
  hgvsp: ENSP00000440343.1:p.Val91Leu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3895G>C
  hgvsp: ENSP00000364547.2:p.Val1299Leu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.325G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3895G>C
  hgvsp: ENSP00000348128.4:p.Val1299Leu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.637G>C
  hgvsp: ENSP00000445472.1:p.Val213Leu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2617G>C
  hgvsp: ENSP00000364549.3:p.Val873Leu
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42334
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val1299Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

10-29782276-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782276
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782276
    reference: chr 10
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3886G>A
  hgvsp: ENSP00000364547.2:p.Val1296Met
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3886G>A
  hgvsp: ENSP00000348128.4:p.Val1296Met
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.262G>A
  hgvsp: ENSP00000440343.1:p.Val88Met
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.316G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.628G>A
  hgvsp: ENSP00000445472.1:p.Val210Met
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2608G>A
  hgvsp: ENSP00000364549.3:p.Val870Met
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3866
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val1296Met
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

10-29782284-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782284
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782284
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 121240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2600G>A
  hgvsp: ENSP00000364549.3:p.Gly867Asp
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.254G>A
  hgvsp: ENSP00000440343.1:p.Gly85Asp
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.620G>A
  hgvsp: ENSP00000445472.1:p.Gly207Asp
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3878G>A
  hgvsp: ENSP00000348128.4:p.Gly1293Asp
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3878G>A
  hgvsp: ENSP00000364547.2:p.Gly1293Asp
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.308G>A
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13376
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly1293Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

10-29782286-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782286
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782286
    reference: chr 10
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.306C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.252C>T
  hgvsp: ENST00000538146.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3876C>T
  hgvsp: ENST00000355867.4:c.3876C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3876C>T
  hgvsp: ENST00000375398.2:c.3876C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2598C>T
  hgvsp: ENST00000375400.3:c.2598C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.618C>T
  hgvsp: ENST00000535393.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr1292Thr
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

10-29782302-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782302
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782302
    reference: chr 10
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3860C>T
  hgvsp: ENSP00000364547.2:p.Thr1287Met
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.602C>T
  hgvsp: ENSP00000445472.1:p.Thr201Met
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3860C>T
  hgvsp: ENSP00000348128.4:p.Thr1287Met
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.236C>T
  hgvsp: ENSP00000440343.1:p.Thr79Met
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2582C>T
  hgvsp: ENSP00000364549.3:p.Thr861Met
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.290C>T
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51634
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3797
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr1287Met
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

10-29782302-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782302
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782302
    reference: chr 10
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3860C>G
  hgvsp: ENSP00000364547.2:p.Thr1287Arg
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.236C>G
  hgvsp: ENSP00000440343.1:p.Thr79Arg
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3860C>G
  hgvsp: ENSP00000348128.4:p.Thr1287Arg
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.602C>G
  hgvsp: ENSP00000445472.1:p.Thr201Arg
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2582C>G
  hgvsp: ENSP00000364549.3:p.Thr861Arg
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.290C>G
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr1287Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD

10-29782306-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782306
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782306
    reference: chr 10
allele count: 34
allele frequency: 2.810149599140425e-4
allele num: 120990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.232G>A
  hgvsp: ENSP00000440343.1:p.Glu78Lys
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3856G>A
  hgvsp: ENSP00000348128.4:p.Glu1286Lys
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.598G>A
  hgvsp: ENSP00000445472.1:p.Glu200Lys
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3856G>A
  hgvsp: ENSP00000364547.2:p.Glu1286Lys
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2578G>A
  hgvsp: ENSP00000364549.3:p.Glu860Lys
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.286G>A
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13344
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 9.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu1286Lys
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

10-29782307-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782307
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782307
    reference: chr 10
allele count: 2
allele frequency: 1.65305650147122e-5
allele num: 120988
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.597C>G
  hgvsp: ENSP00000445472.1:p.His199Gln
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3855C>G
  hgvsp: ENSP00000364547.2:p.His1285Gln
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.231C>G
  hgvsp: ENSP00000440343.1:p.His77Gln
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.285C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3855C>G
  hgvsp: ENSP00000348128.4:p.His1285Gln
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2577C>G
  hgvsp: ENSP00000364549.3:p.His859Gln
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His1285Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

10-29782309-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782309
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782309
    reference: chr 10
allele count: 2
allele frequency: 1.653958750268768e-5
allele num: 120922
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3853C>A
  hgvsp: ENSP00000364547.2:p.His1285Asn
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.229C>A
  hgvsp: ENSP00000440343.1:p.His77Asn
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.595C>A
  hgvsp: ENSP00000445472.1:p.His199Asn
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3853C>A
  hgvsp: ENSP00000348128.4:p.His1285Asn
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2575C>A
  hgvsp: ENSP00000364549.3:p.His859Asn
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.283C>A
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3784
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His1285Asn
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

10-29782314-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782314
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782314
    reference: chr 10
allele count: 3
allele frequency: 2.484225170169424e-5
allele num: 120762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.224G>A
  hgvsp: ENSP00000440343.1:p.Gly75Glu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2570G>A
  hgvsp: ENSP00000364549.3:p.Gly857Glu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3848G>A
  hgvsp: ENSP00000348128.4:p.Gly1283Glu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3848G>A
  hgvsp: ENSP00000364547.2:p.Gly1283Glu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.278G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.590G>A
  hgvsp: ENSP00000445472.1:p.Gly197Glu
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41287
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13413
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3767
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly1283Glu
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-29782337-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782337
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782337
    reference: chr 10
allele count: 188
allele frequency: 1.587971957090971e-3
allele num: 118390
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3842-17T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.584-17T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.272-17T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2564-17T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.218-17T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3842-17T>C
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 12019
  bin: 2.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 3.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 35849
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 9.75e1
  variant carriers: 181
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 4
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/10-29782339-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782339
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782339
    reference: chr 10
allele count: 1
allele frequency: 8.463100880162492e-6
allele num: 118160
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3842-19T>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.584-19T>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.272-19T>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3842-19T>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.218-19T>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2564-19T>G
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11662
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4934
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

10-29782344-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782344
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782344
    reference: chr 10
allele count: 1
allele frequency: 8.50065455040038e-6
allele num: 117638
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3842-24T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.272-24T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.584-24T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3842-24T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2564-24T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.218-24T>C
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10714
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2892
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2966
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39302
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

10-29782345-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782345
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782343
    reference: chr 10
allele count: 2
allele frequency: 1.702852277564921e-5
allele num: 117450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3842-27_3842-26delTT
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.584-27_584-26delTT
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2564-27_2564-26delTT
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.272-27_272-26delTT
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.218-27_218-26delTT
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3842-27_3842-26delTT
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 10254
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6556
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36868
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3499
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: TAA
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

10-29782348-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782348
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782348
    reference: chr 10
allele count: 6
allele frequency: 5.116223544860753e-5
allele num: 117274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.218-28C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.584-28C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2564-28C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.272-28C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3842-28C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3842-28C>G
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9785
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28903
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2676
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 6969
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS

10-29782355-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782355
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782355
    reference: chr 10
allele count: 4
allele frequency: 3.431708991077557e-5
allele num: 116560
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3842-35T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.218-35T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.584-35T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3842-35T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2564-35T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.272-35T>C
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11382
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7817
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6319
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7660
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4977
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27065
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

10-29782356-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782356
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782356
    reference: chr 10
allele count: 2
allele frequency: 1.720666930502263e-5
allele num: 116234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.584-36A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.272-36A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2564-36A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.218-36A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3842-36A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3842-36A>T
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7518
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12184
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5373
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6581
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3593
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7661
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

10-29782356-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782356
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782356
    reference: chr 10
allele count: 1
allele frequency: 8.603334652511313e-6
allele num: 116234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.272-36A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.584-36A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.218-36A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3842-36A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2564-36A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3842-36A>G
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6581
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7661
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

10-29782367-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29782367
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29782367
    reference: chr 10
allele count: 3
allele frequency: 2.634259421867866e-5
allele num: 113884
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3842-47T>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2564-47T>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.584-47T>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.218-47T>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.272-47T>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3842-47T>A
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19491
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11734
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3839
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13789
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7902
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

10-29783792-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783792
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783792
    reference: chr 10
allele count: 6
allele frequency: 4.977931171804998e-5
allele num: 120532
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.217+51T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3841+51T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.271+51T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3841+51T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.583+51T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2563+51T>C
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34502
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5789
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

10-29783813-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783813
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783813
    reference: chr 10
allele count: 61541
allele frequency: 5.077640264026403e-1
allele num: 121200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.271+30C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.583+30C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2563+30C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3841+30C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.217+30C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3841+30C>T
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 2.25e1
  variant carriers: 1018
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 482
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.75e1
  variant carriers: 592
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 4.25e1
  variant carriers: 401
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.25e1
  variant carriers: 266
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 262
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.75e1
  variant carriers: 287
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 9.25e1
  variant carriers: 571
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 2.75e1
  variant carriers: 1149
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 383
genotype depth: GenotypeDepth
  all individuals: 41574
  bin: 9.75e1
  variant carriers: 36786
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 4.75e1
  variant carriers: 351
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 3.25e1
  variant carriers: 975
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 3.75e1
  variant carriers: 686
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 316
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 243
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 7.25e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 143
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.25e1
  variant carriers: 168
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 49567
  bin: 9.75e1
  variant carriers: 43600
genotype quality: GenotypeQuality
  all individuals: 5576
  bin: 6.25e1
  variant carriers: 191
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 7.75e1
  variant carriers: 195
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 5
num of homozygotes: 16404
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

10-29783814-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783814
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783814
    reference: chr 10
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.217+29T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.583+29T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3841+29T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3841+29T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.271+29T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2563+29T>C
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40265
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

10-29783826-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783826
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783826
    reference: chr 10
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3841+17A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.217+17A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.583+17A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2563+17A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3841+17A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.271+17A>G
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40266
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45354
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3228
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

10-29783833-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783833
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783833
    reference: chr 10
allele count: 1229
allele frequency: 1.012923218936472e-2
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.583+10G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3841+10G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.217+10G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3841+10G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.271+10G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2563+10G>A
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 40330
  bin: 9.75e1
  variant carriers: 951
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3211
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45465
  bin: 9.75e1
  variant carriers: 1170
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7574
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 58
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

10-29783834-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783834
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783834
    reference: chr 10
allele count: 22
allele frequency: 1.813146963802993e-4
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.217+9T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.271+9T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2563+9T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3841+9T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.583+9T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3841+9T>C
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39819
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7914
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3377
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

10-29783836-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783836
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783836
    reference: chr 10
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3841+7A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3841+7A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2563+7A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.217+7A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.271+7A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.583+7A>T
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39815
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44867
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7903
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
hgvs: c.3841+7A>T
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

10-29783839-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783839
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783839
    reference: chr 10
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3841+4C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.271+4C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.583+4C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3841+4C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2563+4C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.217+4C>G
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39815
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7955
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: c.3841+4C>G
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

10-29783840-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783840
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783840
    reference: chr 10
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2563+3A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.217+3A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3841+3A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.583+3A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.271+3A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3841+3A>G
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39814
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7942
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3388
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: c.3841+3A>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

10-29783847-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783847
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783847
    reference: chr 10
allele count: 2
allele frequency: 1.648016612007449e-5
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.213C>T
  hgvsp: ENST00000538146.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3837C>T
  hgvsp: ENST00000375398.2:c.3837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3837C>T
  hgvsp: ENST00000355867.4:c.3837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.267C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2559C>T
  hgvsp: ENST00000375400.3:c.2559C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.579C>T
  hgvsp: ENST00000535393.1:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39814
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44884
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7969
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn1279Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

10-29783853-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783853
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783853
    reference: chr 10
allele count: 3
allele frequency: 2.471821237888076e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.261G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2553G>A
  hgvsp: ENST00000375400.3:c.2553G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.207G>A
  hgvsp: ENST00000538146.1:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3831G>A
  hgvsp: ENST00000375398.2:c.3831G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.573G>A
  hgvsp: ENST00000535393.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3831G>A
  hgvsp: ENST00000355867.4:c.3831G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39813
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8009
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu1277Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

10-29783855-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783855
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783855
    reference: chr 10
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2551C>G
  hgvsp: ENSP00000364549.3:p.Leu851Val
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.205C>G
  hgvsp: ENSP00000440343.1:p.Leu69Val
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3829C>G
  hgvsp: ENSP00000364547.2:p.Leu1277Val
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3829C>G
  hgvsp: ENSP00000348128.4:p.Leu1277Val
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.571C>G
  hgvsp: ENSP00000445472.1:p.Leu191Val
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.259C>G
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39812
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu1277Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

10-29783856-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783856
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783856
    reference: chr 10
allele count: 863
allele frequency: 7.243700582517752e-3
allele num: 119138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.570G>A
  hgvsp: ENST00000535393.1:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.204G>A
  hgvsp: ENST00000538146.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.258G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2550G>A
  hgvsp: ENST00000375400.3:c.2550G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3828G>A
  hgvsp: ENST00000375398.2:c.3828G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3828G>A
  hgvsp: ENST00000355867.4:c.3828G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 4.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 3.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 40260
  bin: 9.75e1
  variant carriers: 366
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 8.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 4.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 3.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 7161
  bin: 6.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 7.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.5e0
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.75e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 8.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 1.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.25e1
  variant carriers: 40
hgvs: p.Arg1276Arg
num of homozygotes: 1
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

10-29783870-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783870
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783870
    reference: chr 10
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2536A>T
  hgvsp: ENSP00000364549.3:p.Thr846Ser
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.190A>T
  hgvsp: ENSP00000440343.1:p.Thr64Ser
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3814A>T
  hgvsp: ENSP00000348128.4:p.Thr1272Ser
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3814A>T
  hgvsp: ENSP00000364547.2:p.Thr1272Ser
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.556A>T
  hgvsp: ENSP00000445472.1:p.Thr186Ser
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.244A>T
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40221
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3097
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr1272Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-29783885-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783885
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783885
    reference: chr 10
allele count: 48640
allele frequency: 4.036514522821577e-1
allele num: 120500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.175T>C
  hgvsp: ENST00000538146.1:c.175T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3799T>C
  hgvsp: ENST00000355867.4:c.3799T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.541T>C
  hgvsp: ENST00000535393.1:c.541T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2521T>C
  hgvsp: ENST00000375400.3:c.2521T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3799T>C
  hgvsp: ENST00000375398.2:c.3799T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.229T>C
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 355
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 8.75e1
  variant carriers: 378
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 9.25e1
  variant carriers: 411
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 3.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 43959
  bin: 9.75e1
  variant carriers: 38290
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 3.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 4.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 201
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.25e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 4.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 368
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.25e1
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 8.25e1
  variant carriers: 366
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.75e1
  variant carriers: 286
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 119
genotype quality: GenotypeQuality
  all individuals: 6620
  bin: 6.25e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 8.75e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 47041
  bin: 9.75e1
  variant carriers: 39425
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 9.25e1
  variant carriers: 128
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.25e1
  variant carriers: 110
hgvs: p.Leu1267Leu
num of homozygotes: 7501
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

10-29783886-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783886
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783886
    reference: chr 10
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.228G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3798G>A
  hgvsp: ENST00000375398.2:c.3798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3798G>A
  hgvsp: ENST00000355867.4:c.3798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2520G>A
  hgvsp: ENST00000375400.3:c.2520G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.174G>A
  hgvsp: ENST00000538146.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.540G>A
  hgvsp: ENST00000535393.1:c.540G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26060
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17804
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys1266Lys
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

10-29783892-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783892
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783892
    reference: chr 10
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3792C>T
  hgvsp: ENST00000355867.4:c.3792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.534C>T
  hgvsp: ENST00000535393.1:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2514C>T
  hgvsp: ENST00000375400.3:c.2514C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.222C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.168C>T
  hgvsp: ENST00000538146.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3792C>T
  hgvsp: ENST00000375398.2:c.3792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26060
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31021
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17807
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp1264Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

10-29783892-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783892
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783892
    reference: chr 10
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3792C>A
  hgvsp: ENSP00000348128.4:p.Asp1264Glu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.534C>A
  hgvsp: ENSP00000445472.1:p.Asp178Glu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2514C>A
  hgvsp: ENSP00000364549.3:p.Asp838Glu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.168C>A
  hgvsp: ENSP00000440343.1:p.Asp56Glu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.222C>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3792C>A
  hgvsp: ENSP00000364547.2:p.Asp1264Glu
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26060
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17807
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp1264Glu
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

10-29783896-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783896
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783896
    reference: chr 10
allele count: 32
allele frequency: 2.636261780794833e-4
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.164C>G
  hgvsp: ENSP00000440343.1:p.Ser55Trp
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.530C>G
  hgvsp: ENSP00000445472.1:p.Ser177Trp
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2510C>G
  hgvsp: ENSP00000364549.3:p.Ser837Trp
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.218C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3788C>G
  hgvsp: ENSP00000348128.4:p.Ser1263Trp
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3788C>G
  hgvsp: ENSP00000364547.2:p.Ser1263Trp
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26060
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17803
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser1263Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

10-29783896-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783896
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783896
    reference: chr 10
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3788C>T
  hgvsp: ENSP00000348128.4:p.Ser1263Leu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.530C>T
  hgvsp: ENSP00000445472.1:p.Ser177Leu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3788C>T
  hgvsp: ENSP00000364547.2:p.Ser1263Leu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2510C>T
  hgvsp: ENSP00000364549.3:p.Ser837Leu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.164C>T
  hgvsp: ENSP00000440343.1:p.Ser55Leu
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.218C>T
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26060
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser1263Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP

10-29783907-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783907
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783907
    reference: chr 10
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.207G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3777G>A
  hgvsp: ENSP00000364547.2:p.Met1259Ile
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.519G>A
  hgvsp: ENSP00000445472.1:p.Met173Ile
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.153G>A
  hgvsp: ENSP00000440343.1:p.Met51Ile
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3777G>A
  hgvsp: ENSP00000348128.4:p.Met1259Ile
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2499G>A
  hgvsp: ENSP00000364549.3:p.Met833Ile
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26055
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17803
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31029
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met1259Ile
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

10-29783908-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783908
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783908
    reference: chr 10
allele count: 19862
allele frequency: 1.765322810011377e-1
allele num: 112512
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.152T>C
  hgvsp: ENSP00000440343.1:p.Met51Thr
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3776T>C
  hgvsp: ENSP00000364547.2:p.Met1259Thr
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.206T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2498T>C
  hgvsp: ENSP00000364549.3:p.Met833Thr
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.518T>C
  hgvsp: ENSP00000445472.1:p.Met173Thr
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3776T>C
  hgvsp: ENSP00000348128.4:p.Met1259Thr
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.75e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 4.75e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 278
genotype depth: GenotypeDepth
  all individuals: 8716
  bin: 3.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 8.75e1
  variant carriers: 346
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.25e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 6961
  bin: 4.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 9.25e1
  variant carriers: 390
genotype depth: GenotypeDepth
  all individuals: 28495
  bin: 9.75e1
  variant carriers: 18159
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 259
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 2.5e0
  variant carriers: 190
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 3.25e1
  variant carriers: 282
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 5.75e1
  variant carriers: 257
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 1.75e1
  variant carriers: 247
genotype quality: GenotypeQuality
  all individuals: 7469
  bin: 6.75e1
  variant carriers: 258
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 9.25e1
  variant carriers: 228
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 1.25e1
  variant carriers: 243
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 4.75e1
  variant carriers: 260
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 4.25e1
  variant carriers: 268
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 8.25e1
  variant carriers: 244
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 7.25e1
  variant carriers: 241
hgvs: p.Met1259Thr
num of homozygotes: 4
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-29783908-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783908
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783908
    reference: chr 10
allele count: 28
allele frequency: 2.488623435722412e-4
allele num: 112512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.206T>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3776T>A
  hgvsp: ENSP00000348128.4:p.Met1259Lys
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2498T>A
  hgvsp: ENSP00000364549.3:p.Met833Lys
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3776T>A
  hgvsp: ENSP00000364547.2:p.Met1259Lys
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.518T>A
  hgvsp: ENSP00000445472.1:p.Met173Lys
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.152T>A
  hgvsp: ENSP00000440343.1:p.Met51Lys
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28495
  bin: 9.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7469
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17895
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Met1259Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

10-29783912-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783912
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783912
    reference: chr 10
allele count: 15
allele frequency: 1.235645913307083e-4
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.451G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3772G>A
  hgvsp: ENSP00000348128.4:p.Asp1258Asn
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.202G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2494G>A
  hgvsp: ENSP00000364549.3:p.Asp832Asn
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.514G>A
  hgvsp: ENSP00000445472.1:p.Asp172Asn
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.148G>A
  hgvsp: ENSP00000440343.1:p.Asp50Asn
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3772G>A
  hgvsp: ENSP00000364547.2:p.Asp1258Asn
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 11262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3333
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp1258Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum

10-29783924-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783924
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783924
    reference: chr 10
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.502G>A
  hgvsp: ENSP00000445472.1:p.Glu168Lys
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3760G>A
  hgvsp: ENSP00000364547.2:p.Glu1254Lys
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3760G>A
  hgvsp: ENSP00000348128.4:p.Glu1254Lys
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.190G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2482G>A
  hgvsp: ENSP00000364549.3:p.Glu828Lys
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.439G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.136G>A
  hgvsp: ENSP00000440343.1:p.Glu46Lys
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2403
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu1254Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

10-29783928-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783928
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783928
    reference: chr 10
allele count: 24
allele frequency: 1.977326654363301e-4
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.435T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.132T>C
  hgvsp: ENST00000538146.1:c.132T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.498T>C
  hgvsp: ENST00000535393.1:c.498T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3756T>C
  hgvsp: ENST00000375398.2:c.3756T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.186T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2478T>C
  hgvsp: ENST00000375400.3:c.2478T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3756T>C
  hgvsp: ENST00000355867.4:c.3756T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26897
  bin: 6.25e1
  variant carriers: 0
hgvs: c.3756T>C
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

10-29783933-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783933
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783933
    reference: chr 10
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3755-4C>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.185-4C>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.497-4C>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3755-4C>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.131-4C>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2477-4C>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.434-4C>A
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10056
  bin: 9.75e1
  variant carriers: 1
hgvs: c.3755-4C>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

10-29783940-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783940
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783940
    reference: chr 10
allele count: 70
allele frequency: 5.770816158285244e-4
allele num: 121300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.497-11T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3755-11T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2477-11T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.434-11T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3755-11T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.131-11T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.185-11T>C
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 9.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 15008
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26793
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 4
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

10-29783942-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783942
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783942
    reference: chr 10
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.434-13T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.497-13T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.185-13T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3755-13T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2477-13T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.131-13T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3755-13T>C
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10004
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3323
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

10-29783945-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783945
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783945
    reference: chr 10
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.434-16G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.497-16G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.185-16G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.131-16G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3755-16G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3755-16G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2477-16G>A
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26725
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3322
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

10-29783946-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783946
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783946
    reference: chr 10
allele count: 112
allele frequency: 9.233914850113775e-4
allele num: 121292
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3755-17G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2477-17G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.497-17G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.185-17G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3755-17G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.131-17G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.434-17G>A
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 9.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 12729
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10003
  bin: 9.75e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3605
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

10-29783947-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783947
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783947
    reference: chr 10
allele count: 4
allele frequency: 3.298153034300791e-5
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.434-18C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.131-18C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3755-18C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.185-18C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3755-18C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.497-18C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2477-18C>T
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 15033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6151
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2407
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

10-29783955-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783955
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783955
    reference: chr 10
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3755-26C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.497-26C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.185-26C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2477-26C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.434-26C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3755-26C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.131-26C>T
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2403
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3578
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25848
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-29783960-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783960
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783960
    reference: chr 10
allele count: 1
allele frequency: 8.270477702792114e-6
allele num: 120912
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3755-31G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3755-31G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.434-31G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.497-31G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2477-31G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.185-31G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.131-31G>C
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13931
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9886
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3067
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

10-29783960-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783960
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783960
    reference: chr 10
allele count: 1
allele frequency: 8.270477702792114e-6
allele num: 120912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.434-31G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.185-31G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.497-31G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2477-31G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.131-31G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3755-31G>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3755-31G>A
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3012
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

10-29783965-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783965
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783965
    reference: chr 10
allele count: 1
allele frequency: 8.36456102783726e-6
allele num: 119552
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2477-36G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3755-36G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3755-36G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.131-36G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.434-36G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.497-36G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.185-36G>C
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8526
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

10-29783967-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783967
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783967
    reference: chr 10
allele count: 2
allele frequency: 1.681011296395912e-5
allele num: 118976
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.434-38T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3755-38T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.131-38T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2477-38T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.185-38T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3755-38T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.497-38T>C
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 8326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7565
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8103
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

10-29783969-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783969
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783969
    reference: chr 10
allele count: 1
allele frequency: 8.742328606647666e-6
allele num: 114386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.497-40C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2477-40C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3755-40C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.131-40C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.185-40C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.434-40C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3755-40C>T
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8013
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13710
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2891
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/10-29783974-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783974
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783974
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 100628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2477-45G>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3755-45G>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3755-45G>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.131-45G>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.497-45G>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.185-45G>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.434-45G>T
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8552
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4333
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9869
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

10-29783976-T-TCTGATCAGGCCCCGGCCACGCCAAGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783976
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29784002
    reference: chr 10
allele count: 1
allele frequency: 1.032034346103038e-5
allele num: 96896
alternate allele: TCTGATCAGGCCCCGGCCACGCCAAGC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2549
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2088
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

10-29783977-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783977
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783977
    reference: chr 10
allele count: 3
allele frequency: 3.095655763079146e-5
allele num: 96910
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3754+44G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.184+44G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2476+44G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.433+44G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3754+44G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.496+44G>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.130+44G>C
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6462
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5355
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3426
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5966
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9862
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

10-29783978-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783978
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783978
    reference: chr 10
allele count: 3
allele frequency: 3.096870096622347e-5
allele num: 96872
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.184+43A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.130+43A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3754+43A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3754+43A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.496+43A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.433+43A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2476+43A>T
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 7136
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6193
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3005
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3424
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

10-29783978-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783978
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783978
    reference: chr 10
allele count: 6
allele frequency: 6.193740193244695e-5
allele num: 96872
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.130+43A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.433+43A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3754+43A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.184+43A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2476+43A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.496+43A>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3754+43A>G
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5197
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6479
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3244
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6193
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3424
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

10-29783979-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783979
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783979
    reference: chr 10
allele count: 5
allele frequency: 5.162622612287042e-5
allele num: 96850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.184+42C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2476+42C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3754+42C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.130+42C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3754+42C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.433+42C>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.496+42C>T
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6615
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3579
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3256
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

10-29783979-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783979
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783979
    reference: chr 10
allele count: 2
allele frequency: 2.065049044914817e-5
allele num: 96850
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3754+42C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.496+42C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2476+42C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.130+42C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3754+42C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.433+42C>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.184+42C>G
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

10-29783979-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783979
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783979
    reference: chr 10
allele count: 6
allele frequency: 6.19514713474445e-5
allele num: 96850
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3754+42C>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3754+42C>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.130+42C>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2476+42C>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.433+42C>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.496+42C>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.184+42C>A
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6615
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6336
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9868
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3579
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/10-29783980-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783980
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783980
    reference: chr 10
allele count: 5
allele frequency: 5.160171730515192e-5
allele num: 96896
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.184+41T>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.496+41T>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.130+41T>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.433+41T>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3754+41T>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3754+41T>G
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2476+41T>G
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6742
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6407
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3583
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3285
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

10-29783980-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783980
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783980
    reference: chr 10
allele count: 3
allele frequency: 3.096103038309115e-5
allele num: 96896
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3754+41T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.433+41T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2476+41T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3754+41T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.130+41T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.496+41T>C
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.184+41T>C
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6742
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6407
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3583
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3285
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6476
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3448
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

10-29783980-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783980
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783980
    reference: chr 10
allele count: 10
allele frequency: 1.032034346103038e-4
allele num: 96896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2476+41T>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.433+41T>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3754+41T>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.184+41T>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3754+41T>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.130+41T>A
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.496+41T>A
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6407
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6742
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3413
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3583
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3448
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

10-29783981-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783981
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783981
    reference: chr 10
allele count: 5
allele frequency: 5.162942464169179e-5
allele num: 96844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000491872
  gene symbol: SVIL
  hgvsc: ENST00000491872.1:n.433+40A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000445472
  ensembl transcript: ENST00000535393
  gene symbol: SVIL
  hgvsc: ENST00000535393.1:c.496+40A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364549
  ensembl transcript: ENST00000375400
  gene symbol: SVIL
  hgvsc: ENST00000375400.3:c.2476+40A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000440343
  ensembl transcript: ENST00000538146
  gene symbol: SVIL
  hgvsc: ENST00000538146.1:c.130+40A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000348128
  ensembl transcript: ENST00000355867
  gene symbol: SVIL
  hgvsc: ENST00000355867.4:c.3754+40A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl transcript: ENST00000474106
  gene symbol: SVIL
  hgvsc: ENST00000474106.1:n.184+40A>T
  variant of: http://identifiers.org/hgnc/11480
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197321
  ensembl protein: ENSP00000364547
  ensembl transcript: ENST00000375398
  gene symbol: SVIL
  hgvsc: ENST00000375398.2:c.3754+40A>T
  variant of: http://identifiers.org/hgnc/11480
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3594
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

10-29783981-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29783981
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 29783981
allele count: 4
allele frequency: 4.130353971335344e-5
allele num: 96844
alternate allele: C
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 2009
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3878
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.012e0

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQ
type: SiteQuality
SIO_000300: 5.91e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.152e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.07e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

DP
type: SiteQuality
SIO_000300: 1.496863e6

GenotypeQuality
all individuals: 52009
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.48e-1

DP
type: SiteQuality
SIO_000300: 1.497192e6

MQ
type: SiteQuality
SIO_000300: 5.934e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.453e1

FS
type: SiteQuality
SIO_000300: 2.226e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3875
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 826
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.497146e6

VQSLOD
type: SiteQuality
SIO_000300: -1.175e0

MQ
type: SiteQuality
SIO_000300: 5.743e1

FS
type: SiteQuality
SIO_000300: 4.925e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-1

QD
type: SiteQuality
SIO_000300: 1.599e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.949e0

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

GenotypeQuality
all individuals: 860
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52048
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3871
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.427479062993082e-4
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.26e-1

DP
type: SiteQuality
SIO_000300: 1.497869e6

QD
type: SiteQuality
SIO_000300: 1.149e1

MQRankSum
type: SiteQuality
SIO_000300: -2.14e0

VQSLOD
type: SiteQuality
SIO_000300: -1.586e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.585e1

GenotypeQuality
all individuals: 230
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52021
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.347e0

FS
type: SiteQuality
SIO_000300: 3.908e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.965e0

DP
type: SiteQuality
SIO_000300: 1.497801e6

VQSLOD
type: SiteQuality
SIO_000300: -3.515e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.686e1

MQRankSum
type: SiteQuality
SIO_000300: -1.36e-1

QD
type: SiteQuality
SIO_000300: 1.276e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.95e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.387e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.167e0

MQ
type: SiteQuality
SIO_000300: 5.707e1

QD
type: SiteQuality
SIO_000300: 7.99e0

DP
type: SiteQuality
SIO_000300: 1.498734e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.15606936416185e-4
allele num: 8650
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.147e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

DP
type: SiteQuality
SIO_000300: 1.49804e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.71e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
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African
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allele count: 1
allele frequency: 9.628345850182938e-5
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-2

MQ
type: SiteQuality
SIO_000300: 5.855e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

FS
type: SiteQuality
SIO_000300: 6.5e-1

DP
type: SiteQuality
SIO_000300: 1.494692e6

MQRankSum
type: SiteQuality
SIO_000300: 8.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.91e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

DP
type: SiteQuality
SIO_000300: 1.494692e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e-1

FS
type: SiteQuality
SIO_000300: 6.5e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
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Latino
type: Population
allele count: 21
allele frequency: 1.827676240208877e-3
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.35183850036049e-4
allele num: 66576
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.89073039121218e-4
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.252e0

MQ
type: SiteQuality
SIO_000300: 5.872e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.49319e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.227e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.05e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004266057802079e-5
allele num: 66572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.143e0

DP
type: SiteQuality
SIO_000300: 1.492475e6

MQ
type: SiteQuality
SIO_000300: 5.862e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

VQSLOD
type: SiteQuality
SIO_000300: -1.195e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

QD
type: SiteQuality
SIO_000300: 1.353e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00543984612148e-5
allele num: 66546
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
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East Asian
type: Population
allele count: 0
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allele num: 8640
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MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

DP
type: SiteQuality
SIO_000300: 1.491508e6

MQ
type: SiteQuality
SIO_000300: 5.829e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.422e0

VQSLOD
type: SiteQuality
SIO_000300: -2.697e-1

ClippingRankSum
type: SiteQuality
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FS
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SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-2

QD
type: SiteQuality
SIO_000300: 1.472e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.514129224472599e-5
allele num: 66458
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.402e0

MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.488251e6

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.031e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6552
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East Asian
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African
type: Population
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allele frequency: 9.891196834817012e-5
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 114
allele frequency: 1.750130492185821e-3
allele num: 65138
num of homozygotes: 1

Latino
type: Population
allele count: 11
allele frequency: 9.798681631925886e-4
allele num: 11226
num of homozygotes: 0

South Asian
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allele count: 62
allele frequency: 3.857160632076645e-3
allele num: 16074
num of homozygotes: 3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
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African
type: Population
allele count: 0
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Other
type: Population
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.538556218844237e-5
allele num: 64996
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
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InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

MQRankSum
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QD
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BaseQRankSum
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SIO_000300: 3.92e0

VQSLOD
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MQ
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.395151e6

GenotypeQuality
all individuals: 1645
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2000
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2064
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545451735542299e-5
allele num: 64706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.057e0

QD
type: SiteQuality
SIO_000300: 1.388e1

DP
type: SiteQuality
SIO_000300: 1.357641e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.286e0

MQ
type: SiteQuality
SIO_000300: 4.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: -2.957e0

GenotypeQuality
all individuals: 628
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2830
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.095687707024115e-5
allele num: 64606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8294
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.89e-1

QD
type: SiteQuality
SIO_000300: 2.097e1

FS
type: SiteQuality
SIO_000300: 1.1465e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

DP
type: SiteQuality
SIO_000300: 1.339607e6

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
all individuals: 761
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35101
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.298577317670397e-5
allele num: 64526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.609e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

DP
type: SiteQuality
SIO_000300: 1.320228e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 5.764e1

QD
type: SiteQuality
SIO_000300: 1.472e1

FS
type: SiteQuality
SIO_000300: 2.184e0

GenotypeQuality
all individuals: 1451
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2002
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2473
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.237330422579136e-5
allele num: 64130
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

DP
type: SiteQuality
SIO_000300: 1.256581e6

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

QD
type: SiteQuality
SIO_000300: 1.517e1

MQRankSum
type: SiteQuality
SIO_000300: 5.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.69e0

GenotypeQuality
all individuals: 669
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2000
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2421
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.308352258390108e-5
allele num: 15852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563086157308991e-5
allele num: 63976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.248397e6

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

FS
type: SiteQuality
SIO_000300: 1.937e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

VQSLOD
type: SiteQuality
SIO_000300: 6.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.07e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
all individuals: 2421
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5373
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3593
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2000
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563086157308991e-5
allele num: 63976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15852
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

FS
type: SiteQuality
SIO_000300: 1.937e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 1.07e1

DP
type: SiteQuality
SIO_000300: 1.248397e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
all individuals: 6790
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5689
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3960
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 597
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7745
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.778806965542794e-4
allele num: 10796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15590
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.201649e6

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

QD
type: SiteQuality
SIO_000300: 1.054e1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e-1

GenotypeQuality
all individuals: 203
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45605
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 828
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16018
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.934812760055479e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.704e1

VQSLOD
type: SiteQuality
SIO_000300: -7.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

DP
type: SiteQuality
SIO_000300: 6.023321e6

MQ
type: SiteQuality
SIO_000300: 5.885e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 96

GenotypeQuality
all individuals: 290
bin: 9.25e1
variant carriers: 141

GenotypeQuality
all individuals: 216
bin: 8.75e1
variant carriers: 89

GenotypeQuality
all individuals: 2376
bin: 6.75e1
variant carriers: 171

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 16

GenotypeQuality
all individuals: 73
bin: 3.25e1
variant carriers: 39

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 49

European (Non-Finnish)
type: Population
allele count: 30518
allele frequency: 4.579119527053386e-1
allele num: 66646
num of homozygotes: 7078

European (Finnish)
type: Population
allele count: 3712
allele frequency: 5.612337465981252e-1
allele num: 6614
num of homozygotes: 1071

Latino
type: Population
allele count: 7556
allele frequency: 6.526170323026429e-1
allele num: 11578
num of homozygotes: 2489

African
type: Population
allele count: 7789
allele frequency: 7.516888631538313e-1
allele num: 10362
num of homozygotes: 2901

East Asian
type: Population
allele count: 3167
allele frequency: 3.663813049514114e-1
allele num: 8644
num of homozygotes: 581

Other
type: Population
allele count: 444
allele frequency: 4.911504424778761e-1
allele num: 904
num of homozygotes: 115

South Asian
type: Population
allele count: 8355
allele frequency: 5.078409919766593e-1
allele num: 16452
num of homozygotes: 2169

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 5.857e1

QD
type: SiteQuality
SIO_000300: 2.021e1

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

FS
type: SiteQuality
SIO_000300: 6.63e-1

DP
type: SiteQuality
SIO_000300: 7.736337e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.75e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.162e0

GenotypeQuality
all individuals: 45352
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7025
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.908e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e0

DP
type: SiteQuality
SIO_000300: 7.592468e6

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

FS
type: SiteQuality
SIO_000300: 7.976e0

VQSLOD
type: SiteQuality
SIO_000300: -1.204e0

QD
type: SiteQuality
SIO_000300: 1.542e1

GenotypeQuality
all individuals: 1066
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7536
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.54e1

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

MQ
type: SiteQuality
SIO_000300: 5.881e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.67e-1

FS
type: SiteQuality
SIO_000300: 4.444e0

DP
type: SiteQuality
SIO_000300: 7.596425e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.371e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.242e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.802e-1

GenotypeQuality
all individuals: 77
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1159
allele frequency: 1.114637430275053e-1
allele num: 10398
num of homozygotes: 58

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.303964757709251e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.549184261036468e-4
allele num: 66688
num of homozygotes: 0

Latino
type: Population
allele count: 49
allele frequency: 4.232164449818622e-3
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.639033e6

VQSLOD
type: SiteQuality
SIO_000300: 6.850000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

QD
type: SiteQuality
SIO_000300: 1.336e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.49e0

FS
type: SiteQuality
SIO_000300: 1.222e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.169999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.809e1

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44868
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 424
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 22
allele frequency: 1.900155467265504e-3
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.69e-1

MQ
type: SiteQuality
SIO_000300: 5.591e1

FS
type: SiteQuality
SIO_000300: 1.836e0

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

QD
type: SiteQuality
SIO_000300: 1.326e1

DP
type: SiteQuality
SIO_000300: 7.55094e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.092e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 839
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1289
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3377
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 5.84e1

FS
type: SiteQuality
SIO_000300: 1.946e0

QD
type: SiteQuality
SIO_000300: 1.117e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.819e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.19e-1

DP
type: SiteQuality
SIO_000300: 7.550562e6

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44867
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.369e0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.077e0

QD
type: SiteQuality
SIO_000300: 1.294e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

MQ
type: SiteQuality
SIO_000300: 5.801e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 7.551225e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44866
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 429
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.26e-1

FS
type: SiteQuality
SIO_000300: 2.238e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.987e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

QD
type: SiteQuality
SIO_000300: 6.74e0

DP
type: SiteQuality
SIO_000300: 7.551167e6

VQSLOD
type: SiteQuality
SIO_000300: -3.418e0

MQ
type: SiteQuality
SIO_000300: 5.831e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

GenotypeQuality
all individuals: 435
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3398
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.974e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 7.552954e6

FS
type: SiteQuality
SIO_000300: 1.108e0

MQ
type: SiteQuality
SIO_000300: 5.9e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.146e0

QD
type: SiteQuality
SIO_000300: 1.26e1

VQSLOD
type: SiteQuality
SIO_000300: -3.455e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.89e-1

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44886
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.076e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

FS
type: SiteQuality
SIO_000300: 5.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

MQ
type: SiteQuality
SIO_000300: 5.887e1

DP
type: SiteQuality
SIO_000300: 7.553723e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

QD
type: SiteQuality
SIO_000300: 2.195e1

VQSLOD
type: SiteQuality
SIO_000300: -8.411e-1

GenotypeQuality
all individuals: 3420
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8021
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44886
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 862
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.011e0

MQ
type: SiteQuality
SIO_000300: 5.834e1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.192e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.103e0

QD
type: SiteQuality
SIO_000300: 7.93e0

FS
type: SiteQuality
SIO_000300: 1.135e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.553746e6

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 26

GenotypeQuality
all individuals: 596
bin: 2.5e0
variant carriers: 39

GenotypeQuality
all individuals: 409
bin: 9.25e1
variant carriers: 16

GenotypeQuality
all individuals: 44155
bin: 9.75e1
variant carriers: 386

GenotypeQuality
all individuals: 237
bin: 5.75e1
variant carriers: 36

GenotypeQuality
all individuals: 168
bin: 4.25e1
variant carriers: 26

GenotypeQuality
all individuals: 1081
bin: 7.75e1
variant carriers: 28

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 35

GenotypeQuality
all individuals: 3094
bin: 6.75e1
variant carriers: 22

Latino
type: Population
allele count: 21
allele frequency: 1.822916666666667e-3
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.514672686230248e-3
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514692517418964e-4
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 143
allele frequency: 1.392676275808337e-2
allele num: 10268
num of homozygotes: 1

East Asian
type: Population
allele count: 14
allele frequency: 1.62262401483542e-3
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 296
allele frequency: 1.918340894361633e-2
allele num: 15430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 384
allele frequency: 5.835511519056593e-3
allele num: 65804
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.221e0

DP
type: SiteQuality
SIO_000300: 7.685784e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-2

QD
type: SiteQuality
SIO_000300: 3.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.617e0

FS
type: SiteQuality
SIO_000300: 7.326e0

MQRankSum
type: SiteQuality
SIO_000300: -3.654e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.295e0

MQ
type: SiteQuality
SIO_000300: 5.393e1

GenotypeQuality
all individuals: 347
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 956
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46941
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.679465e6

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 8.67e0

VQSLOD
type: SiteQuality
SIO_000300: -1.988e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.52e-1

FS
type: SiteQuality
SIO_000300: 4.192e0

MQ
type: SiteQuality
SIO_000300: 5.72e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 112

GenotypeQuality
all individuals: 106
bin: 2.25e1
variant carriers: 105

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 123

GenotypeQuality
all individuals: 846
bin: 7.75e1
variant carriers: 108

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 128

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 112

GenotypeQuality
all individuals: 849
bin: 7.25e1
variant carriers: 101

GenotypeQuality
all individuals: 2872
bin: 6.75e1
variant carriers: 114

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 111

Latino
type: Population
allele count: 6612
allele frequency: 5.771648044692738e-1
allele num: 11456
num of homozygotes: 1727

European (Non-Finnish)
type: Population
allele count: 27009
allele frequency: 4.077445652173913e-1
allele num: 66240
num of homozygotes: 3948

Other
type: Population
allele count: 381
allele frequency: 4.252232142857143e-1
allele num: 896
num of homozygotes: 69

African
type: Population
allele count: 2644
allele frequency: 2.546715469081102e-1
allele num: 10382
num of homozygotes: 243

East Asian
type: Population
allele count: 2934
allele frequency: 3.402133580705009e-1
allele num: 8624
num of homozygotes: 383

European (Finnish)
type: Population
allele count: 3210
allele frequency: 4.915773353751914e-1
allele num: 6530
num of homozygotes: 600

South Asian
type: Population
allele count: 5850
allele frequency: 3.573173711214268e-1
allele num: 16372
num of homozygotes: 531

DP
type: SiteQuality
SIO_000300: 1.077704e7

MQ
type: SiteQuality
SIO_000300: 5.701e1

FS
type: SiteQuality
SIO_000300: 8.425000000000001e0

QD
type: SiteQuality
SIO_000300: 1.635e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.722e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.4e0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.686e0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31020
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7166
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.673e-1

QD
type: SiteQuality
SIO_000300: 3.92e0

MQRankSum
type: SiteQuality
SIO_000300: -2.477e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

MQ
type: SiteQuality
SIO_000300: 5.148e1

FS
type: SiteQuality
SIO_000300: 3.268e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.42e-1

DP
type: SiteQuality
SIO_000300: 6.563504e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7164
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.743e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.04e0

MQ
type: SiteQuality
SIO_000300: 5.316e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.26e-1

QD
type: SiteQuality
SIO_000300: 1.081e1

DP
type: SiteQuality
SIO_000300: 6.563527e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.003e0

FS
type: SiteQuality
SIO_000300: 1.3216e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.672e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31021
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.081e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.26e-1

DP
type: SiteQuality
SIO_000300: 6.563527e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.316e1

MQRankSum
type: SiteQuality
SIO_000300: -6.672e0

FS
type: SiteQuality
SIO_000300: 1.3216e1

VQSLOD
type: SiteQuality
SIO_000300: -6.743e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.003e0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31011
bin: 9.75e1
variant carriers: 32

GenotypeQuality
all individuals: 292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1567
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7160
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.34855704396296e-4
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.852822192255828e-4
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.318535152876144e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.777675063554426e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.451241671714113e-4
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.242e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.14e0

MQRankSum
type: SiteQuality
SIO_000300: -2.137e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.19e-2

DP
type: SiteQuality
SIO_000300: 6.563911e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e0

VQSLOD
type: SiteQuality
SIO_000300: -4.599e0

MQ
type: SiteQuality
SIO_000300: 5.352e1

QD
type: SiteQuality
SIO_000300: 4.59e0

GenotypeQuality
all individuals: 1567
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17803
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31011
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.22e-1

MQ
type: SiteQuality
SIO_000300: 5.352e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.14e0

QD
type: SiteQuality
SIO_000300: 4.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e0

VQSLOD
type: SiteQuality
SIO_000300: -4.599e0

MQRankSum
type: SiteQuality
SIO_000300: -2.137e0

FS
type: SiteQuality
SIO_000300: 2.242e0

DP
type: SiteQuality
SIO_000300: 6.563911e6

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1736
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7159
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.05e-1

MQ
type: SiteQuality
SIO_000300: 5.726e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 6.562735e6

FS
type: SiteQuality
SIO_000300: 8.813000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.933999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.3e-1

GenotypeQuality
all individuals: 683
bin: 3.75e1
variant carriers: 245

GenotypeQuality
all individuals: 17895
bin: 6.25e1
variant carriers: 240

GenotypeQuality
all individuals: 616
bin: 7.5e0
variant carriers: 244

GenotypeQuality
all individuals: 728
bin: 5.25e1
variant carriers: 241

GenotypeQuality
all individuals: 695
bin: 2.75e1
variant carriers: 268

GenotypeQuality
all individuals: 18697
bin: 9.75e1
variant carriers: 16060

GenotypeQuality
all individuals: 1897
bin: 7.75e1
variant carriers: 269

GenotypeQuality
all individuals: 687
bin: 8.75e1
variant carriers: 239

GenotypeQuality
all individuals: 670
bin: 2.25e1
variant carriers: 259

South Asian
type: Population
allele count: 4158
allele frequency: 2.714099216710183e-1
allele num: 15320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11455
allele frequency: 1.861996098829649e-1
allele num: 61520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 962
allele frequency: 1.592715231788079e-1
allele num: 6040
num of homozygotes: 0

Other
type: Population
allele count: 148
allele frequency: 1.770334928229665e-1
allele num: 836
num of homozygotes: 0

African
type: Population
allele count: 1066
allele frequency: 1.062176165803109e-1
allele num: 10036
num of homozygotes: 0

East Asian
type: Population
allele count: 788
allele frequency: 9.652131308182263e-2
allele num: 8164
num of homozygotes: 0

Latino
type: Population
allele count: 1285
allele frequency: 1.212721781804454e-1
allele num: 10596
num of homozygotes: 4

VQSLOD
type: SiteQuality
SIO_000300: -8.927e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.136e0

MQRankSum
type: SiteQuality
SIO_000300: -3.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.24e-1

DP
type: SiteQuality
SIO_000300: 7.377405e6

QD
type: SiteQuality
SIO_000300: 1.99e0

MQ
type: SiteQuality
SIO_000300: 5.571e1

FS
type: SiteQuality
SIO_000300: 7.2122e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.04e-1

GenotypeQuality
all individuals: 18697
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 772
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 743
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.300390117035111e-4
allele num: 61520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 20
allele frequency: 3.311258278145695e-3
allele num: 6040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.2122e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.136e0

VQSLOD
type: SiteQuality
SIO_000300: -8.927e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.04e-1

DP
type: SiteQuality
SIO_000300: 7.377405e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.93e0

MQ
type: SiteQuality
SIO_000300: 5.571e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e0

QD
type: SiteQuality
SIO_000300: 1.99e0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 10158
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1227
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 3617
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variant carriers: 0

GenotypeQuality
all individuals: 11250
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26891
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 9.085402786190188e-4
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.19e-1

FS
type: SiteQuality
SIO_000300: 1.3131e1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.658613e6

MQ
type: SiteQuality
SIO_000300: 5.366e1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e0

GenotypeQuality
all individuals: 11269
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.993e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

FS
type: SiteQuality
SIO_000300: 2.5862e1

MQRankSum
type: SiteQuality
SIO_000300: -3.658e0

MQ
type: SiteQuality
SIO_000300: 5.373e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.0e-3

DP
type: SiteQuality
SIO_000300: 2.644339e6

QD
type: SiteQuality
SIO_000300: 5.600000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 1.814725198755617e-3
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496133325340207e-5
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 8.712e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.557e1

DP
type: SiteQuality
SIO_000300: 2.643957e6

QD
type: SiteQuality
SIO_000300: 1.339e1

VQSLOD
type: SiteQuality
SIO_000300: -1.877e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.495e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.316e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.639e0

DP
type: SiteQuality
SIO_000300: 2.641258e6

FS
type: SiteQuality
SIO_000300: 6.056e0

VQSLOD
type: SiteQuality
SIO_000300: -9.977e-1

QD
type: SiteQuality
SIO_000300: 1.835e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.72e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 62

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 67
allele frequency: 6.468430198880093e-3
allele num: 10358
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.594706798131811e-4
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.04e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.555e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.01e0

MQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

FS
type: SiteQuality
SIO_000300: 5.572e1

QD
type: SiteQuality
SIO_000300: 3.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.59e-1

DP
type: SiteQuality
SIO_000300: 2.638874e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.425e0

FS
type: SiteQuality
SIO_000300: 2.1445e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e0

MQ
type: SiteQuality
SIO_000300: 5.42e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.635308e6

VQSLOD
type: SiteQuality
SIO_000300: -8.077e0

MQRankSum
type: SiteQuality
SIO_000300: -4.289e0

QD
type: SiteQuality
SIO_000300: 3.2e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.1727e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.142e0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e-1

DP
type: SiteQuality
SIO_000300: 2.633265e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

MQ
type: SiteQuality
SIO_000300: 5.43e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 2.999130252226854e-4
allele num: 66686
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 1.816923343138951e-3
allele num: 11558
num of homozygotes: 0

East Asian
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allele count: 5
allele frequency: 5.78168362627197e-4
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 63
allele frequency: 6.065857885615251e-3
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
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Other
type: Population
allele count: 2
allele frequency: 2.207505518763797e-3
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-2

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.244e0

MQ
type: SiteQuality
SIO_000300: 5.56e1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.890173410404624e-4
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 906
num of homozygotes: 0

South Asian
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allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.91e-1

BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 2.624384e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.7006e1

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.64e0

FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.03e-1

ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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African
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allele num: 10332
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Latino
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ClippingRankSum
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BaseQRankSum
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MQ
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FS
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QD
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 9.678668215253581e-5
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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MQRankSum
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MQ
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QD
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BaseQRankSum
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DP
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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Latino
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allele num: 11430
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Other
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MQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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VQSLOD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 8.799718409010911e-5
allele num: 11364
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 888
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African
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: 6.282985674792661e-5
allele num: 15916
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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DP
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FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQ
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ClippingRankSum
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9530
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6408
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South Asian
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allele frequency: 6.495193556767992e-5
allele num: 15396
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

FS
type: SiteQuality
SIO_000300: 3.55e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.302e0

MQRankSum
type: SiteQuality
SIO_000300: 8.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.28e-1

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.21e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
type: Population
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Latino
type: Population
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 56952
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InbreedingCoeff
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ClippingRankSum
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MQ
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FS
type: SiteQuality
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MQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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Other
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Latino
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European (Non-Finnish)
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allele num: 55104
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East Asian
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VQSLOD
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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MQ
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FS
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 7122
num of homozygotes: 0

Latino
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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MQ
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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Latino
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Other
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South Asian
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European (Finnish)
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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FS
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MQ
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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African
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Latino
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European (Non-Finnish)
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Other
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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BaseQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -1.571e0

QD
type: SiteQuality
SIO_000300: 9.16e0

GenotypeQuality
all individuals: 2264
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6336
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2983
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1174
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1778
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9868
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 459
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.401738155312588e-4
allele num: 7134
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.367424242424242e-4
allele num: 8448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.632796890325862e-5
allele num: 55054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14278
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.589e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.156e0

MQ
type: SiteQuality
SIO_000300: 4.926e1

FS
type: SiteQuality
SIO_000300: 5.298e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.046e1

DP
type: SiteQuality
SIO_000300: 1.864787e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.950000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.062e0

VQSLOD
type: SiteQuality
SIO_000300: -3.79e-2

GenotypeQuality
all individuals: 767
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3414
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3579
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6336
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3256
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9868
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2983
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.401738155312588e-4
allele num: 7134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.816398445162931e-5
allele num: 55054
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.926e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.062e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.156e0

MQRankSum
type: SiteQuality
SIO_000300: -1.589e0

FS
type: SiteQuality
SIO_000300: 5.298e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.950000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.79e-2

DP
type: SiteQuality
SIO_000300: 1.864787e6

QD
type: SiteQuality
SIO_000300: 1.046e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 2077
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3414
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1824
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3256
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1778
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2264
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.795977011494253e-4
allele num: 5568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.632796890325862e-5
allele num: 55054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.771793054571226e-4
allele num: 5644
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.401738155312588e-4
allele num: 7134
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.183712121212121e-4
allele num: 8448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14278
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.926e1

VQSLOD
type: SiteQuality
SIO_000300: -3.79e-2

FS
type: SiteQuality
SIO_000300: 5.298e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.950000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.046e1

MQRankSum
type: SiteQuality
SIO_000300: -1.589e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.156e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.062e0

DP
type: SiteQuality
SIO_000300: 1.864787e6

GenotypeQuality
all individuals: 1821
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2078
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3413
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3448
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1775
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6476
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9869
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.630291149350178e-5
allele num: 55092
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.40016802016242e-4
allele num: 14284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7138
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.794043774668102e-4
allele num: 5574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.23e0

DP
type: SiteQuality
SIO_000300: 1.861104e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -1.666e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.08e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.72e-1

MQ
type: SiteQuality
SIO_000300: 4.756e1

GenotypeQuality
all individuals: 9869
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2078
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2950
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 5.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.773049645390071e-4
allele num: 5640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14284
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.400952647800504e-4
allele num: 7138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.815145574675089e-5
allele num: 55092
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 8.23e0

DP
type: SiteQuality
SIO_000300: 1.861104e6

MQ
type: SiteQuality
SIO_000300: 4.756e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.72e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.666e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.08e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
all individuals: 3285
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9869
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 6476
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2078
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1775
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5640
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.40016802016242e-4
allele num: 14284
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.400952647800504e-4
allele num: 7138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.588087549336204e-4
allele num: 5574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 9.075727873375445e-5
allele num: 55092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 1.861104e6

VQSLOD
type: SiteQuality
SIO_000300: 1.7e-2

MQ
type: SiteQuality
SIO_000300: 4.756e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -1.666e0

GenotypeQuality
all individuals: 9869
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 780
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 460
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3419
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2903
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3260
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.998880179171333e-5
allele num: 14288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.771165426850868e-4
allele num: 5646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.633192849876471e-5
allele num: 55048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7138
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.794687724335966e-4
allele num: 5572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.644e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.606e0

VQSLOD
type: SiteQuality
SIO_000300: 7.75e-1

QD
type: SiteQuality
SIO_000300: 8.539999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.51e-2

FS
type: SiteQuality
SIO_000300: 2.963e0

MQ
type: SiteQuality
SIO_000300: 4.635e1

DP
type: SiteQuality
SIO_000300: 1.858866e6