7-99817594-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817594
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817594
    reference: chr 7
allele count: 1
allele frequency: 2.572678157962439e-5
allele num: 38870
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1298A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2626T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2626T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.61A>G
  hgvsp: ENSP00000316675.2:p.Met21Val
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3599T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3599T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2626T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2626T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2626T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3599T>C
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8627
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2572
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met21Val
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

7-99817598-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817598
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817598
    reference: chr 7
allele count: 1
allele frequency: 2.465969619254291e-5
allele num: 40552
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2622C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3595C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2622C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3595C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2622C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2622C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3595C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.65G>C
  hgvsp: ENSP00000316675.2:p.Gly22Ala
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2622C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1302G>C
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly22Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

7-99817601-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817601
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817601
    reference: chr 7
allele count: 4
allele frequency: 9.536979638548471e-5
allele num: 41942
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.68A>G
  hgvsp: ENSP00000316675.2:p.His23Arg
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3592T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3592T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2619T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2619T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1305A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2619T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2619T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2619T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3592T>C
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6664
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30284
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 9.75e1
  variant carriers: 2
hgvs: p.His23Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/7-99817602-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817602
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817602
    reference: chr 7
allele count: 1
allele frequency: 2.363172322525759e-5
allele num: 42316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2618G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3591G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.69C>A
  hgvsp: ENSP00000316675.2:p.His23Gln
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3591G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1306C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2618G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2618G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3591G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2618G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2618G>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6665
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6571
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His23Gln
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

7-99817602-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817602
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817602
    reference: chr 7
allele count: 1
allele frequency: 2.363172322525759e-5
allele num: 42316
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.69C>T
  hgvsp: ENST00000317271.2:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3591G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2618G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3591G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1306C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2618G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3591G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2618G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2618G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2618G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30331
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His23His
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

7-99817603-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817603
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817603
    reference: chr 7
allele count: 12
allele frequency: 2.811489620917483e-4
allele num: 42682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2617G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3590G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2617G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.70C>G
  hgvsp: ENSP00000316675.2:p.Arg24Gly
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1307C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2617G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3590G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2617G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2617G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3590G>C
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31947
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6294
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg24Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

7-99817603-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817603
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817603
    reference: chr 7
allele count: 1
allele frequency: 2.342908017431236e-5
allele num: 42682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3590G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2617G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3590G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.70C>T
  hgvsp: ENSP00000316675.2:p.Arg24Trp
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2617G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1307C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3590G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2617G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2617G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2617G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg24Trp
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

7-99817604-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817604
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817604
    reference: chr 7
allele count: 10
allele frequency: 2.297477369847907e-4
allele num: 43526
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2616C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3589C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.71G>A
  hgvsp: ENSP00000316675.2:p.Arg24Gln
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2616C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2616C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3589C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3589C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2616C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1308G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2616C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32048
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6669
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg24Gln
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

7-99817607-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817607
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817607
    reference: chr 7
allele count: 1
allele frequency: 2.22005150519492e-5
allele num: 45044
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3586G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.74C>T
  hgvsp: ENSP00000316675.2:p.Thr25Ile
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3586G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2613G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3586G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2613G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2613G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2613G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1311C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2613G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7585
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31978
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr25Ile
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

7-99817611-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817611
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817611
    reference: chr 7
allele count: 1
allele frequency: 2.109793662179839e-5
allele num: 47398
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2609C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2609C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3582C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3582C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.78G>T
  hgvsp: ENST00000317271.2:c.78G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2609C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2609C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3582C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1315G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2609C>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10049
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu26Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

7-99817626-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817626
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817626
    reference: chr 7
allele count: 1
allele frequency: 1.759510152373579e-5
allele num: 56834
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2594C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3567C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2594C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2594C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2594C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.93G>A
  hgvsp: ENST00000317271.2:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1330G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3567C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2594C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3567C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val31Val
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

7-99817636-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817636
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817636
    reference: chr 7
allele count: 3
allele frequency: 4.796163069544364e-5
allele num: 62550
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3557A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3557A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2584A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.103T>C
  hgvsp: ENST00000317271.2:c.103T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1340T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3557A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2584A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2584A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2584A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2584A>G
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu35Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

7-99817637-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817637
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817637
    reference: chr 7
allele count: 1
allele frequency: 1.589420815054994e-5
allele num: 62916
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2583A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3556A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1341T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3556A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.104T>C
  hgvsp: ENSP00000316675.2:p.Leu35Ser
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2583A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2583A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3556A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2583A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2583A>G
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5941
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu35Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

7-99817638-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817638
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817638
    reference: chr 7
allele count: 71
allele frequency: 1.120368617054851e-3
allele num: 63372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3555C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2582C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2582C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3555C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2582C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.105G>C
  hgvsp: ENSP00000316675.2:p.Leu35Phe
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1342G>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3555C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2582C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2582C>G
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5931
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15464
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26579
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu35Phe
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

7-99817649-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817649
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817649
    reference: chr 7
allele count: 12
allele frequency: 1.810118562765861e-4
allele num: 66294
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2571G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2571G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1353C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3544G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2571G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3544G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.116C>T
  hgvsp: ENSP00000316675.2:p.Ala39Val
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2571G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2571G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3544G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25046
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15151
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26107
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala39Val
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

7-99817650-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817650
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817650
    reference: chr 7
allele count: 8
allele frequency: 1.190299062639488e-4
allele num: 67210
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.117G>A
  hgvsp: ENST00000317271.2:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2570C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3543C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3543C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2570C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3543C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1354G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2570C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.94C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2570C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2570C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15501
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24785
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
hgvs: c.117G>A
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

7-99817660-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817660
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817660
    reference: chr 7
allele count: 2
allele frequency: 2.885503231763619e-5
allele num: 69312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2560G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3533G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2560G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.84G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1355+9C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2560G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2560G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.118+9C>T
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2560G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3533G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3533G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15017
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

7-99817661-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817661
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817661
    reference: chr 7
allele count: 3
allele frequency: 4.311831666091756e-5
allele num: 69576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2559C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3532C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.118+10G>A
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3532C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2559C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2559C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2559C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2559C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.83C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1355+10G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3532C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

7-99817666-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817666
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817664
    reference: chr 7
allele count: 18
allele frequency: 2.559581366247654e-4
allele num: 70324
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.118+20_118+21delAG
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2552_895+2553delCT
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2552_669+2553delCT
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3525_129+3526delCT
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2552_669+2553delCT
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1355+20_*1355+21delAG
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.76_77delCT
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2552_664+2553delCT
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2552_739+2553delCT
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3525_191+3526delCT
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3525_*48+3526delCT
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8408
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14166
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: CAG
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

7-99817672-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817672
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817672
    reference: chr 7
allele count: 1
allele frequency: 1.409403540421693e-5
allele num: 70952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2548C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.118+21G>A
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2548C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1355+21G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2548C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.72C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3521C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3521C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3521C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2548C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2548C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25934
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

7-99817674-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817674
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817674
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 70992
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3519C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3519C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2546C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2546C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.70C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1355+23G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2546C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2546C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2546C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3519C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.118+23G>A
  variant of: http://identifiers.org/hgnc/32190
canonical: true
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23012
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

7-99817675-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817675
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817675
    reference: chr 7
allele count: 1
allele frequency: 1.419607620453707e-5
allele num: 70442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3518C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2545C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.69C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2545C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1355+24G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2545C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2545C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2545C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3518C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3518C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.118+24G>A
  variant of: http://identifiers.org/hgnc/32190
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23007
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9524
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

7-99817676-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817676
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817676
    reference: chr 7
allele count: 2
allele frequency: 2.833101963339661e-5
allele num: 70594
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2544G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2544G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3517G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.68G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3517G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1355+25C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2544G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.118+25C>T
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3517G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2544G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2544G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22997
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

7-99817677-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817677
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817676
    reference: chr 7
allele count: 2
allele frequency: 2.824938557586372e-5
allele num: 70798
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1355+30delG
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3515delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3515delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.118+30delG
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2542delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2542delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2542delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2542delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2542delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.66delC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3515delC
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: mature miRNA
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22939
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9606
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: AG
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

7-99817684-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817684
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817684
    reference: chr 7
allele count: 1
allele frequency: 1.410875024690313e-5
allele num: 70878
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3509C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1355+33G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3509C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2536C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2536C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2536C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.60C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2536C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3509C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.118+33G>A
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2536C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: mature miRNA
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22863
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

7-99817692-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817692
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817692
    reference: chr 7
allele count: 3
allele frequency: 4.238126183143559e-5
allele num: 70786
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3501C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2528C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2528C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2528C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.52C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1355+41G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3501C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2528C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3501C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2528C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.118+41G>A
  variant of: http://identifiers.org/hgnc/32190
canonical: true
consequence: mature miRNA
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22921
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10953
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

7-99817698-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817698
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817698
    reference: chr 7
allele count: 1
allele frequency: 1.419083839473236e-5
allele num: 70468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2522C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3495C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.119-39G>A
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.46C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2522C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2522C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3495C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2522C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3495C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2522C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1356-39G>A
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22980
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3318
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

7-99817700-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817700
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817700
    reference: chr 7
allele count: 22
allele frequency: 3.136852311289816e-4
allele num: 70134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1356-37A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2520T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2520T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2520T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3493T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.119-37A>G
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3493T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3493T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2520T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.44T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2520T>C
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10178
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11982
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3175
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

7-99817701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817701
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817701
    reference: chr 7
allele count: 3
allele frequency: 4.284490145672665e-5
allele num: 70020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2519C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2519C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3492C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.119-36G>A
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3492C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2519C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.43C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3492C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2519C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1356-36G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2519C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12112
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23030
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

7-99817701-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817701
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817701
    reference: chr 7
allele count: 1
allele frequency: 1.428163381890888e-5
allele num: 70020
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3492C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2519C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2519C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.119-36G>C
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3492C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2519C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.43C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2519C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2519C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1356-36G>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3492C>G
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4736
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3389
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

7-99817705-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817705
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817705
    reference: chr 7
allele count: 88
allele frequency: 1.259229580447599e-3
allele num: 69884
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.119-32A>G
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2515T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3488T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1356-32A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2515T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3488T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2515T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2515T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2515T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.39T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3488T>C
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23176
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12459
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9514
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

7-99817707-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817707
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817707
    reference: chr 7
allele count: 2
allele frequency: 2.881014116969173e-5
allele num: 69420
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.37G>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1356-30C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3486G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2513G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2513G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3486G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.119-30C>G
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2513G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2513G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2513G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3486G>C
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

7-99817715-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817715
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817715
    reference: chr 7
allele count: 1
allele frequency: 1.461689127956266e-5
allele num: 68414
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3478G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2505G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2505G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.119-22C>T
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3478G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1356-22C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2505G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2505G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.29G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3478G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2505G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23415
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

7-99817716-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817716
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817716
    reference: chr 7
allele count: 2
allele frequency: 2.92201151272536e-5
allele num: 68446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2504C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.119-21G>A
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1356-21G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3477C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2504C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.28C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2504C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2504C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3477C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2504C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3477C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

7-99817716-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817716
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817716
    reference: chr 7
allele count: 18
allele frequency: 2.629810361452824e-4
allele num: 68446
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2504C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2504C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3477C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3477C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1356-21G>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.28C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2504C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2504C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.119-21G>C
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2504C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3477C>G
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13456
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8118
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23435
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27754
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

7-99817718-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817718
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817718
    reference: chr 7
allele count: 2
allele frequency: 2.919367081216792e-5
allele num: 68508
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3475G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2502G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2502G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3475G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.26G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1356-19C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3475G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2502G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2502G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2502G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.119-19C>T
  variant of: http://identifiers.org/hgnc/32190
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13505
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3710
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP

7-99817720-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817720
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817720
    reference: chr 7
allele count: 1
allele frequency: 1.466017709493931e-5
allele num: 68212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3473A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2500A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3473A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2500A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.24A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.119-17T>C
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1356-17T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2500A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2500A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2500A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3473A>G
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13617
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

7-99817724-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817724
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817724
    reference: chr 7
allele count: 1
allele frequency: 1.467093101728236e-5
allele num: 68162
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.20A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3469A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2496A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3469A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2496A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1356-13T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2496A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2496A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3469A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2496A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.119-13T>C
  variant of: http://identifiers.org/hgnc/32190
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23789
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13702
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9283
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD

7-99817728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817728
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817728
    reference: chr 7
allele count: 1
allele frequency: 1.484913281064386e-5
allele num: 67344
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
  hgvsc: ENST00000410550.1:n.16C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3465C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3465C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2492C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2492C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1356-9G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2492C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3465C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2492C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2492C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.119-9G>A
  variant of: http://identifiers.org/hgnc/32190
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13937
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3832
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

7-99817741-C-CCTGCCTGTGAGTAGTTTATCTAGTGGCCACAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817741
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817773
    reference: chr 7
allele count: 1
allele frequency: 1.505706628120577e-5
allele num: 66414
alternate allele: CCTGCCTGTGAGTAGTTTATCTAGTGGCCACAG
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000222482
  ensembl transcript: ENST00000410550
  gene symbol: AC005071.1
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsp: ENSP00000316675.2:p.Pro42LeufsTer43
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28288
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3889
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3671
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro42LeufsTer43
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

7-99817752-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817752
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817752
    reference: chr 7
allele count: 17
allele frequency: 2.571393998063891e-4
allele num: 66112
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3441C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2468C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1371G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2468C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2468C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.134G>T
  hgvsp: ENSP00000316675.2:p.Trp45Leu
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2468C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3441C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2468C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3441C>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14288
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 24323
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7088
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Trp45Leu
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

7-99817759-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817759
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817759
    reference: chr 7
allele count: 1
allele frequency: 1.51666818333485e-5
allele num: 65934
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1378A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3434T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2461T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3434T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2461T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2461T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.141A>G
  hgvsp: ENST00000317271.2:c.141A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3434T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2461T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2461T>C
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln47Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

7-99817763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817763
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817763
    reference: chr 7
allele count: 2
allele frequency: 3.063162408870918e-5
allele num: 65292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2457G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3430G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2457G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3430G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3430G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2457G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.145C>T
  hgvsp: ENSP00000316675.2:p.Arg49Trp
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2457G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2457G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1382C>T
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg49Trp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

7-99817764-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817764
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817764
    reference: chr 7
allele count: 4
allele frequency: 6.115646882549002e-5
allele num: 65406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3429C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1383G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3429C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2456C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.146G>A
  hgvsp: ENSP00000316675.2:p.Arg49Gln
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2456C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2456C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2456C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2456C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3429C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24411
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7151
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg49Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

7-99817766-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817766
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817766
    reference: chr 7
allele count: 1
allele frequency: 1.520403819254394e-5
allele num: 65772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3427T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1385A>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2454T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3427T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2454T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.148A>T
  hgvsp: ENSP00000316675.2:p.Met50Leu
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2454T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2454T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3427T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2454T>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24511
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29488
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met50Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

7-99817777-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817777
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817777
    reference: chr 7
allele count: 3
allele frequency: 4.599392880139822e-5
allele num: 65226
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3416G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3416G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2443G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.159C>T
  hgvsp: ENST00000317271.2:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2443G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2443G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2443G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3416G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2443G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1396C>T
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14225
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr53Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

7-99817780-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817780
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817780
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 65460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2440C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3413C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3413C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2440C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2440C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2440C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1399G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.162G>A
  hgvsp: ENST00000317271.2:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2440C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3413C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24480
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1703
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Glu54Glu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

7-99817785-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817785
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817785
    reference: chr 7
allele count: 8
allele frequency: 1.228576693900117e-4
allele num: 65116
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.167C>T
  hgvsp: ENSP00000316675.2:p.Ser56Leu
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3408G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3408G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2435G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2435G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2435G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1404C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2435G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2435G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3408G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14175
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24394
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7855
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8604
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser56Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

7-99817786-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817786
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817786
    reference: chr 7
allele count: 2
allele frequency: 3.064852274120387e-5
allele num: 65256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1405G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2434C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.168G>A
  hgvsp: ENST00000317271.2:c.168G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2434C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3407C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2434C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3407C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2434C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2434C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3407C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8099
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2909
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser56Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

7-99817792-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817792
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817792
    reference: chr 7
allele count: 17
allele frequency: 2.606242717851229e-4
allele num: 65228
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2428G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2428G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3401G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2428G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2428G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3401G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.174C>T
  hgvsp: ENST00000317271.2:c.174C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1411C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3401G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2428G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14004
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8265
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29984
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3485
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe58Phe
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

7-99817814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817814
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817814
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 64468
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.196G>A
  hgvsp: ENSP00000316675.2:p.Gly66Arg
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3379C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1433G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2406C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2406C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3379C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2406C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2406C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3379C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2406C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24144
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly66Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

7-99817815-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817815
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817815
    reference: chr 7
allele count: 1
allele frequency: 1.55269859014968e-5
allele num: 64404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3378C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2405C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2405C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3378C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2405C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.197G>A
  hgvsp: ENSP00000316675.2:p.Gly66Glu
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1434G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2405C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2405C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3378C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14920
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3627
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly66Glu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

7-99817828-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817828
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817828
    reference: chr 7
allele count: 1
allele frequency: 1.579030475288173e-5
allele num: 63330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2392G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.210C>T
  hgvsp: ENST00000317271.2:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3365G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3365G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3365G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1447C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2392G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2392G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2392G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2392G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15774
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile70Ile
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

7-99817831-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817831
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817831
    reference: chr 7
allele count: 1
allele frequency: 1.584585155606262e-5
allele num: 63108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2389G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2389G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2389G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1450C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.213C>T
  hgvsp: ENST00000317271.2:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2389G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3362G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2389G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3362G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3362G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3493
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29692
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser71Ser
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

7-99817840-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817840
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817840
    reference: chr 7
allele count: 1
allele frequency: 1.619275859835481e-5
allele num: 61756
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.222T>C
  hgvsp: ENST00000317271.2:c.222T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2380A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3353A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2380A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3353A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1459T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2380A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2380A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2380A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3353A>G
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3998
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr74Thr
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

7-99817841-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817841
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817841
    reference: chr 7
allele count: 1
allele frequency: 1.631640777966323e-5
allele num: 61288
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3352C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2379C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2379C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1460G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2379C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2379C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2379C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3352C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3352C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.223G>A
  hgvsp: ENSP00000316675.2:p.Val75Met
  variant of: http://identifiers.org/hgnc/32190
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15695
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2701
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val75Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

7-99817843-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817843
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817843
    reference: chr 7
allele count: 1
allele frequency: 1.649675014022238e-5
allele num: 60618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2377C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2377C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2377C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1462G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2377C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3350C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3350C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.225G>A
  hgvsp: ENST00000317271.2:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3350C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2377C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5877
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4103
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val75Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

7-99817846-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817846
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817846
    reference: chr 7
allele count: 23
allele frequency: 3.847054494363229e-4
allele num: 59786
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2374G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3347G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.228C>T
  hgvsp: ENST00000317271.2:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2374G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2374G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1465C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3347G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2374G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3347G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2374G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23805
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4923
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15301
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3766
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser76Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

7-99817847-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817847
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817848
    reference: chr 7
allele count: 10
allele frequency: 1.724613686534216e-4
allele num: 57984
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2372dupC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1473dupG
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2372dupC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2372dupC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2372dupC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3345dupC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3345dupC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.236dupG
  hgvsp: ENSP00000316675.2:p.Asn81GlnfsTer61
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3345dupC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2372dupC
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23589
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5973
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15405
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3285
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3327
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Asn81GlnfsTer61
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

7-99817847-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817847
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817846
    reference: chr 7
allele count: 11
allele frequency: 1.897075055187638e-4
allele num: 57984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2372delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3345delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3345delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2372delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2372delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2372delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3345delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.236delG
  hgvsp: ENSP00000316675.2:p.Gly79AlafsTer245
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2372delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1473delG
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23589
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5973
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15405
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3770
  bin: 3.25e1
  variant carriers: 2
hgvs: p.Gly79AlafsTer245
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: TG
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

7-99817849-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817849
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817849
    reference: chr 7
allele count: 22
allele frequency: 3.852889667250438e-4
allele num: 57100
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.231G>C
  hgvsp: ENSP00000316675.2:p.Trp77Cys
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3344C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2371C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2371C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1468G>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3344C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2371C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3344C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2371C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2371C>G
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15061
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23974
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Trp77Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

7-99817850-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817850
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817850
    reference: chr 7
allele count: 1
allele frequency: 1.688789813219847e-5
allele num: 59214
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3343C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1469G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3343C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2370C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2370C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2370C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.232G>A
  hgvsp: ENSP00000316675.2:p.Gly78Arg
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3343C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2370C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2370C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15103
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3692
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly78Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

7-99817852-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817852
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817852
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 56392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3341C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.234G>T
  hgvsp: ENST00000317271.2:c.234G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3341C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2368C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2368C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1471G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2368C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2368C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2368C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3341C>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3988
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7176
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly78Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-99817853-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817853
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817853
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 56812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2367C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2367C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.235G>T
  hgvsp: ENSP00000316675.2:p.Gly79Cys
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1472G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2367C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2367C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3340C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2367C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3340C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3340C>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6597
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4004
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Gly79Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

7-99817854-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817854
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817854
    reference: chr 7
allele count: 1
allele frequency: 1.783230500374478e-5
allele num: 56078
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.236G>A
  hgvsp: ENSP00000316675.2:p.Gly79Asp
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3339C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2366C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1473G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3339C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2366C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2366C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3339C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2366C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2366C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14600
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7583
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20424
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly79Asp
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

7-99817855-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817855
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817855
    reference: chr 7
allele count: 3
allele frequency: 5.353510118134123e-5
allele num: 56038
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2365G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3338G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1474C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3338G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2365G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2365G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3338G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.237C>G
  hgvsp: ENST00000317271.2:c.237C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2365G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2365G>C
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14568
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24611
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Gly79Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

7-99817856-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817856
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817856
    reference: chr 7
allele count: 3
allele frequency: 5.366726296958855e-5
allele num: 55900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2364G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3337G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2364G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3337G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2364G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1475C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.238C>T
  hgvsp: ENSP00000316675.2:p.Pro80Ser
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2364G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3337G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2364G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14579
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Pro80Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

7-99817858-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817858
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817858
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 56098
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2362G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414739
  gene symbol: GATS
  hgvsc: ENST00000414739.2:n.895+2362G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*48+3335G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2362G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213413
  ensembl protein: ENSP00000316675
  ensembl transcript: ENST00000317271
  gene symbol: PVRIG
  hgvsc: ENST00000317271.2:c.240C>T
  hgvsp: ENST00000317271.2:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32190
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1477C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2362G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2362G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.129+3335G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.191+3335G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24329
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7528
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2889
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19370
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro80Pro
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

7-99817859-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99817859
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99817859
    reference: chr 7
allele count: 47154
allele frequency: 7.468165980361102e-1
allele num: 63140
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.664+2361T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000328453
  gene symbol: GATS
  hgvsc: ENST00000328453.5:n.669+2361T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.739+2361T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000435519
  gene symbol: GATS
  hgvsc: ENST00000435519.2:n.669+2361T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000393790
  ensembl transcript: ENST00000451963
  gene symbol: STAG3
  hgvsc: ENST00000451963.1:c.*1478A>G
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: missense
filter: PASS
hgvs: p.Asn81Asp
num of homozygotes: 17262
reference allele: A

GenotypeQuality
all individuals: 1566
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5940
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28988
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 288
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2318
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.129943502824859e-4
allele num: 8850
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.74e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.516e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

VQSLOD
type: SiteQuality
SIO_000300: -3.298e0

QD
type: SiteQuality
SIO_000300: 1.004e1

FS
type: SiteQuality
SIO_000300: 1.49e0

MQ
type: SiteQuality
SIO_000300: 4.487e1

DP
type: SiteQuality
SIO_000300: 6.98748e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: -1.398e0

GenotypeQuality
all individuals: 548
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 2267
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.937007874015748e-4
allele num: 2540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4640
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

DP
type: SiteQuality
SIO_000300: 7.16127e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.056e0

VQSLOD
type: SiteQuality
SIO_000300: -2.487e0

QD
type: SiteQuality
SIO_000300: 1.088e1

MQRankSum
type: SiteQuality
SIO_000300: 5.05e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

MQ
type: SiteQuality
SIO_000300: 5.801e1

GenotypeQuality
all individuals: 7109
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.964589870013447e-5
allele num: 22310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 912
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.103509159126021e-4
allele num: 9062
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.417118093174431e-4
allele num: 1846
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

DP
type: SiteQuality
SIO_000300: 7.2968e5

MQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

MQ
type: SiteQuality
SIO_000300: 5.569e1

VQSLOD
type: SiteQuality
SIO_000300: -1.278e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

FS
type: SiteQuality
SIO_000300: 1.477e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.51e-1

QD
type: SiteQuality
SIO_000300: 5.29e0

GenotypeQuality
all individuals: 1514
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2770
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.319148936170213e-4
allele num: 1880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22544
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 1.104e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.367e0

FS
type: SiteQuality
SIO_000300: 2.943e0

VQSLOD
type: SiteQuality
SIO_000300: -1.667e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

DP
type: SiteQuality
SIO_000300: 7.34586e5

MQ
type: SiteQuality
SIO_000300: 5.843e1

GenotypeQuality
all individuals: 6571
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1495
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2770
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22544
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.100836635843241e-4
allele num: 9084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

VQSLOD
type: SiteQuality
SIO_000300: -1.667e0

FS
type: SiteQuality
SIO_000300: 2.943e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

QD
type: SiteQuality
SIO_000300: 1.104e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.367e0

DP
type: SiteQuality
SIO_000300: 7.34586e5

GenotypeQuality
all individuals: 497
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 2.5e0
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GenotypeQuality
all individuals: 668
bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1623
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 534
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 5.285877896220598e-4
allele num: 22702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

DP
type: SiteQuality
SIO_000300: 7.41188e5

FS
type: SiteQuality
SIO_000300: 4.063e0

VQSLOD
type: SiteQuality
SIO_000300: -3.984e-1

QD
type: SiteQuality
SIO_000300: 1.185e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.15e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.718e1

GenotypeQuality
all individuals: 668
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1499
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.404898246850498e-5
allele num: 22702
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.718e1

FS
type: SiteQuality
SIO_000300: 4.063e0

VQSLOD
type: SiteQuality
SIO_000300: -3.984e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

DP
type: SiteQuality
SIO_000300: 7.41188e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

QD
type: SiteQuality
SIO_000300: 1.185e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 287
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.030869212022746e-4
allele num: 4924
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 9.823182711198428e-4
allele num: 9162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 960
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2018
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.63e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.257e1

DP
type: SiteQuality
SIO_000300: 7.47937e5

MQ
type: SiteQuality
SIO_000300: 5.763e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1024
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24036
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.990445859872612e-4
allele num: 5024
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9284
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.667e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 7.026e0

MQ
type: SiteQuality
SIO_000300: 5.714e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

DP
type: SiteQuality
SIO_000300: 7.62019e5

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

GenotypeQuality
all individuals: 434
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31004
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2464
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2300
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4647
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.937938095613137e-5
allele num: 25394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1126
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.907e-1

DP
type: SiteQuality
SIO_000300: 7.84812e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.076e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

GenotypeQuality
all individuals: 14357
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1779
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2050
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29163
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5948
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.222272346458723e-5
allele num: 31034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.434e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.166e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

MQRankSum
type: SiteQuality
SIO_000300: -4.75e-1

DP
type: SiteQuality
SIO_000300: 8.70385e5

GenotypeQuality
all individuals: 16452
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1883
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27665
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4100
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 6.06550748079256e-4
allele num: 4946
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10448
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.20766e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.765e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-2

MQ
type: SiteQuality
SIO_000300: 5.893e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

QD
type: SiteQuality
SIO_000300: 8.91e0

GenotypeQuality
all individuals: 743
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27332
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15263
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 333
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.874719714827804e-5
allele num: 34786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4954
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.829e1

VQSLOD
type: SiteQuality
SIO_000300: -1.04e0

FS
type: SiteQuality
SIO_000300: 2.178e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

DP
type: SiteQuality
SIO_000300: 9.20776e5

QD
type: SiteQuality
SIO_000300: 5.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

GenotypeQuality
all individuals: 27273
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15866
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 743
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 685
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 9.75e1
variant carriers: 67

GenotypeQuality
all individuals: 333
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1915
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 298
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2053
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 902
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1820
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.304147465437788e-3
allele num: 434
num of homozygotes: 0

South Asian
type: Population
allele count: 70
allele frequency: 6.638846737481031e-3
allele num: 10544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4996
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.372e-1

DP
type: SiteQuality
SIO_000300: 9.26061e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

MQ
type: SiteQuality
SIO_000300: 5.811e1

FS
type: SiteQuality
SIO_000300: 5.37e-1

QD
type: SiteQuality
SIO_000300: 1.39e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

GenotypeQuality
all individuals: 2215
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2035
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 663
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1652
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1258
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1046
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15273
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1919
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.534212948757288e-4
allele num: 6518
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.23613595706619e-4
allele num: 4472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.33009889904833e-5
allele num: 10718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 2.435196709778668e-4
allele num: 36958
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

QD
type: SiteQuality
SIO_000300: 1.189e1

FS
type: SiteQuality
SIO_000300: 1.756e0

VQSLOD
type: SiteQuality
SIO_000300: 9.94e-1

DP
type: SiteQuality
SIO_000300: 9.48364e5

MQ
type: SiteQuality
SIO_000300: 5.893e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

GenotypeQuality
all individuals: 26224
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2158
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1653
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 903
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
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variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 534
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2069
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16599
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1985
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 3.03951367781155e-4
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5278
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.255831173639393e-5
allele num: 10804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.332977872567315e-4
allele num: 37510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1992
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.763e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.288e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

FS
type: SiteQuality
SIO_000300: 1.165e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

DP
type: SiteQuality
SIO_000300: 9.54673e5

QD
type: SiteQuality
SIO_000300: 1.14e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

GenotypeQuality
all individuals: 15384
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1931
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variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25708
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 9.25e1
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GenotypeQuality
all individuals: 554
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1653
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 529
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 2.05761316872428e-3
allele num: 486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6650
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.110595187842972e-4
allele num: 4738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38946
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.604e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.358e1

MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

DP
type: SiteQuality
SIO_000300: 9.59309e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.132e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.164222873900293e-5
allele num: 10912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5474
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.000300030003001e-4
allele num: 6666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39144
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

FS
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SIO_000300: 2.022e0

ReadPosRankSum
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SIO_000300: 4.45e-1

MQ
type: SiteQuality
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
SIO_000300: -1.108e0

QD
type: SiteQuality
SIO_000300: 9.19e0

DP
type: SiteQuality
SIO_000300: 9.60329e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 16

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.633986928104575e-3
allele num: 5508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4808
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 8.181818181818182e-4
allele num: 11000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39642
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

FS
type: SiteQuality
SIO_000300: 1.816e0

VQSLOD
type: SiteQuality
SIO_000300: 3.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

QD
type: SiteQuality
SIO_000300: 1.41e1

DP
type: SiteQuality
SIO_000300: 9.57738e5

MQ
type: SiteQuality
SIO_000300: 5.875e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.03179190751445e-5
allele num: 11072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4870
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.48e0

VQSLOD
type: SiteQuality
SIO_000300: -7.425e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

QD
type: SiteQuality
SIO_000300: 1.666e1

FS
type: SiteQuality
SIO_000300: 7.05e-1

MQ
type: SiteQuality
SIO_000300: 5.609e1

DP
type: SiteQuality
SIO_000300: 9.57489e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5542
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

VQSLOD
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QD
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SIO_000300: 5.18e0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.54182e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.514837541494819e-5
allele num: 39764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.47466e5

VQSLOD
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QD
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MQ
type: SiteQuality
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ReadPosRankSum
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FS
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ClippingRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.183e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Other
type: Population
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allele num: 504
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 39832
num of homozygotes: 0

African
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num of homozygotes: 0

Latino
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allele frequency: 4.156275976724855e-4
allele num: 4812
num of homozygotes: 0

South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
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QD
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VQSLOD
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BaseQRankSum
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FS
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DP
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ClippingRankSum
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ReadPosRankSum
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MQ
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SIO_000300: 5.896e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2192
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 1.500600240096038e-4
allele num: 6664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.501250625312656e-5
allele num: 39980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

VQSLOD
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ClippingRankSum
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SIO_000300: -5.03e-1

MQRankSum
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InbreedingCoeff
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FS
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.855e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 326
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variant carriers: 0

GenotypeQuality
all individuals: 1683
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 8.96700143472023e-5
allele num: 11152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40036
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.521e0

FS
type: SiteQuality
SIO_000300: 5.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.435e0

MQRankSum
type: SiteQuality
SIO_000300: -4.92e-1

QD
type: SiteQuality
SIO_000300: 1.496e1

DP
type: SiteQuality
SIO_000300: 9.43482e5

GenotypeQuality
all individuals: 1846
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.683363148479427e-4
allele num: 11180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e-1

DP
type: SiteQuality
SIO_000300: 9.33409e5

FS
type: SiteQuality
SIO_000300: 2.21e0

QD
type: SiteQuality
SIO_000300: 1.186e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

MQ
type: SiteQuality
SIO_000300: 5.906e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.179e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 792
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variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.514837541494819e-5
allele num: 39764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2134
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.05e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.486e1

DP
type: SiteQuality
SIO_000300: 9.22819e5

VQSLOD
type: SiteQuality
SIO_000300: -1.687e0

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.898e0

QD
type: SiteQuality
SIO_000300: 5.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 9.75e1
variant carriers: 20

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11146
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 3.333333333333334e-3
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2136
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

QD
type: SiteQuality
SIO_000300: 1.395e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.047e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

FS
type: SiteQuality
SIO_000300: 4.064e0

DP
type: SiteQuality
SIO_000300: 9.17989e5

GenotypeQuality
all individuals: 789
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 5.25e1
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GenotypeQuality
all individuals: 1756
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3389
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 962
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27113
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3217
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
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variant carriers: 0

GenotypeQuality
all individuals: 349
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GenotypeQuality
all individuals: 1419
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
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variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 11411
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
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variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 4.25e1
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GenotypeQuality
all individuals: 343
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.490483162518302e-4
allele num: 5464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39532
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.61e-1

DP
type: SiteQuality
SIO_000300: 9.16191e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 1.885e0

QD
type: SiteQuality
SIO_000300: 1.349e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 789
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 329
bin: 8.75e1
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GenotypeQuality
all individuals: 568
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 2.134016218523261e-4
allele num: 4686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.16191e5

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

FS
type: SiteQuality
SIO_000300: 1.885e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.349e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 77

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1811
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GenotypeQuality
all individuals: 953
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 2.05761316872428e-3
allele num: 486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.757373929590866e-4
allele num: 2102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.772331375329147e-4
allele num: 39496
num of homozygotes: 0

African
type: Population
allele count: 74
allele frequency: 1.121551985450136e-2
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.687315634218289e-4
allele num: 5424
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 6.457167455876022e-4
allele num: 4646
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

QD
type: SiteQuality
SIO_000300: 1.103e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

FS
type: SiteQuality
SIO_000300: 3.219e0

MQ
type: SiteQuality
SIO_000300: 5.461e1

MQRankSum
type: SiteQuality
SIO_000300: -1.256e0

DP
type: SiteQuality
SIO_000300: 9.09252e5

VQSLOD
type: SiteQuality
SIO_000300: -4.97e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10330
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GenotypeQuality
all individuals: 347
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.09502216334641e-5
allele num: 39254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.905e0

DP
type: SiteQuality
SIO_000300: 9.05095e5

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

GenotypeQuality
all individuals: 335
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27652
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3643
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9489
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3476
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2673
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1699
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 561
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1775
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.585315408479834e-5
allele num: 38680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5244
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.201e1

MQ
type: SiteQuality
SIO_000300: 5.866e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

DP
type: SiteQuality
SIO_000300: 8.92218e5

GenotypeQuality
all individuals: 1937
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9307
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3677
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.167424555601488e-5
allele num: 38704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.89882e5

BaseQRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

QD
type: SiteQuality
SIO_000300: 1.066e1

MQ
type: SiteQuality
SIO_000300: 5.484e1

FS
type: SiteQuality
SIO_000300: 1.115e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.133e0

VQSLOD
type: SiteQuality
SIO_000300: -3.357e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

GenotypeQuality
all individuals: 1937
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3677
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3498
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9307
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1089
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 710
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 342
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 651
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 7.607455306200076e-4
allele num: 5258
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.607503607503608e-4
allele num: 11088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2068
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 7.77121541809139e-4
allele num: 6434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.291856138900372e-4
allele num: 38704
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.133e0

QD
type: SiteQuality
SIO_000300: 1.066e1

VQSLOD
type: SiteQuality
SIO_000300: -3.357e-1

MQ
type: SiteQuality
SIO_000300: 5.484e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

FS
type: SiteQuality
SIO_000300: 1.115e0

DP
type: SiteQuality
SIO_000300: 8.89882e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

GenotypeQuality
all individuals: 2696
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28044
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variant carriers: 0

GenotypeQuality
all individuals: 9389
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1672
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3512
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 274
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 7.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5262
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.802451333813987e-4
allele num: 11096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.73e-1

FS
type: SiteQuality
SIO_000300: 7.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.87629e5

GenotypeQuality
all individuals: 1973
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27951
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3575
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variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
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variant carriers: 0

GenotypeQuality
all individuals: 500
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variant carriers: 0

GenotypeQuality
all individuals: 1882
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variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8798
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.594841455187088e-5
allele num: 38538
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.83438e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.205e1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.816e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3751
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
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variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1481
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2745
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28566
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11082
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.284148012791229e-4
allele num: 4378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2042
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.79e-1

MQ
type: SiteQuality
SIO_000300: 5.843e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

DP
type: SiteQuality
SIO_000300: 8.80594e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

VQSLOD
type: SiteQuality
SIO_000300: -2.069e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.022e1

GenotypeQuality
all individuals: 3610
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28218
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
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variant carriers: 0

GenotypeQuality
all individuals: 330
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variant carriers: 0

GenotypeQuality
all individuals: 783
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variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1993
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variant carriers: 0

GenotypeQuality
all individuals: 2899
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variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8286
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38086
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.044862518089724e-5
allele num: 11056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.177e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

DP
type: SiteQuality
SIO_000300: 8.72554e5

MQ
type: SiteQuality
SIO_000300: 5.616e1

GenotypeQuality
all individuals: 1247
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 759
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3067
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 559
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GenotypeQuality
all individuals: 741
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variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10988
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.658584569575158e-5
allele num: 37614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.59729e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.388e0

QD
type: SiteQuality
SIO_000300: 3.26e0

FS
type: SiteQuality
SIO_000300: 3.985e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.395e0

MQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 250
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3474
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3096
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 29329
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 9.75e1
variant carriers: 15

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3755
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8435
bin: 6.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4132
num of homozygotes: 0

East Asian
type: Population
allele count: 17
allele frequency: 3.489326765188834e-3
allele num: 4872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37464
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.901e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.342e0

FS
type: SiteQuality
SIO_000300: 2.486e0

VQSLOD
type: SiteQuality
SIO_000300: -5.787e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

QD
type: SiteQuality
SIO_000300: 9.44e0

DP
type: SiteQuality
SIO_000300: 8.59679e5

GenotypeQuality
all individuals: 560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1697
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29310
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8210
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.679528403001072e-5
allele num: 37320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1952
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11012
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.397e0

MQRankSum
type: SiteQuality
SIO_000300: -7.17e-1

DP
type: SiteQuality
SIO_000300: 8.56647e5

VQSLOD
type: SiteQuality
SIO_000300: -2.715e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

FS
type: SiteQuality
SIO_000300: 3.307e0

QD
type: SiteQuality
SIO_000300: 1.296e1

MQ
type: SiteQuality
SIO_000300: 5.803e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

GenotypeQuality
all individuals: 1703
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 726
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3413
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28921
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3762
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3215
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7754
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.408036342004219e-5
allele num: 36982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4072
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.55156e5

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

FS
type: SiteQuality
SIO_000300: 5.655e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 2.704e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.405e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.751e1

GenotypeQuality
all individuals: 29334
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3757
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8315
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3217
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1705
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 509
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3327
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.401609679684546e-5
allele num: 37026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1916
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.422480620155039e-4
allele num: 4128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.6249593760156e-4
allele num: 6154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4770
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.723e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

FS
type: SiteQuality
SIO_000300: 5.659999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

DP
type: SiteQuality
SIO_000300: 8.57276e5

QD
type: SiteQuality
SIO_000300: 3.259e1

VQSLOD
type: SiteQuality
SIO_000300: -9.458e-1

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3328
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
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variant carriers: 0

GenotypeQuality
all individuals: 1549
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variant carriers: 0

GenotypeQuality
all individuals: 1620
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variant carriers: 0

GenotypeQuality
all individuals: 177
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variant carriers: 0

GenotypeQuality
all individuals: 8402
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variant carriers: 0

GenotypeQuality
all individuals: 500
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3789
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variant carriers: 0

GenotypeQuality
all individuals: 753
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variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 328
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.105809506465124e-5
allele num: 10982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6178
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.72e-1

MQ
type: SiteQuality
SIO_000300: 5.771e1

QD
type: SiteQuality
SIO_000300: 1.21e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.961e0

FS
type: SiteQuality
SIO_000300: 6.59e-1

DP
type: SiteQuality
SIO_000300: 8.56152e5

GenotypeQuality
all individuals: 347
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1781
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8386
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3256
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 330
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variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3117
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variant carriers: 0

GenotypeQuality
all individuals: 559
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variant carriers: 0

GenotypeQuality
all individuals: 751
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variant carriers: 1

GenotypeQuality
all individuals: 742
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variant carriers: 1

GenotypeQuality
all individuals: 29404
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
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variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1703
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3654
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.094216078574027e-5
allele num: 10996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1912
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.93339911198816e-4
allele num: 4054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36984
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.88e-1

FS
type: SiteQuality
SIO_000300: 6.73e-1

QD
type: SiteQuality
SIO_000300: 1.45e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

DP
type: SiteQuality
SIO_000300: 8.57033e5

GenotypeQuality
all individuals: 603
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3254
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8873
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variant carriers: 0

GenotypeQuality
all individuals: 227
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GenotypeQuality
all individuals: 543
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GenotypeQuality
all individuals: 1531
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GenotypeQuality
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GenotypeQuality
all individuals: 750
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29727
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.811e1

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.051e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

DP
type: SiteQuality
SIO_000300: 8.58464e5

QD
type: SiteQuality
SIO_000300: 1.796e1

GenotypeQuality
all individuals: 309
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29442
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2999
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3340
bin: 7.5e0
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GenotypeQuality
all individuals: 3588
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1384
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 748
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 2.16134435618955e-4
allele num: 37014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4696
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-2

QD
type: SiteQuality
SIO_000300: 1.115e1

VQSLOD
type: SiteQuality
SIO_000300: 6.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

FS
type: SiteQuality
SIO_000300: 5.24e-1

MQ
type: SiteQuality
SIO_000300: 5.824e1

DP
type: SiteQuality
SIO_000300: 8.58775e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.695853776891141e-5
allele num: 37094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4046
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.089256498818396e-5
allele num: 11002
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

FS
type: SiteQuality
SIO_000300: 9.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.31e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.106e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.23e-1

DP
type: SiteQuality
SIO_000300: 8.61646e5

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 16

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 4.585671126456625e-4
allele num: 37072
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11028
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.464e0

QD
type: SiteQuality
SIO_000300: 8.49e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

FS
type: SiteQuality
SIO_000300: 1.672e0

DP
type: SiteQuality
SIO_000300: 8.60333e5

VQSLOD
type: SiteQuality
SIO_000300: -1.324e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5940
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.136e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.43034e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 6.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 246
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1493
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.726578689060966e-5
allele num: 36676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.195e0

FS
type: SiteQuality
SIO_000300: 5.434e0

MQRankSum
type: SiteQuality
SIO_000300: -2.98e0

DP
type: SiteQuality
SIO_000300: 8.41354e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 8.550000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.72e0

MQ
type: SiteQuality
SIO_000300: 5.486e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 2.589331952356292e-4
allele num: 3862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4334
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.14934e5

VQSLOD
type: SiteQuality
SIO_000300: -1.275e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 1.848e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.431e0

MQ
type: SiteQuality
SIO_000300: 5.516e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.08e-1

QD
type: SiteQuality
SIO_000300: 9.789999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1736
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35958
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.081002542680712e-5
allele num: 11012
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.08272e5

MQ
type: SiteQuality
SIO_000300: 5.671e1

QD
type: SiteQuality
SIO_000300: 6.61e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.769285208775655e-4
allele num: 5652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3636
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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FS
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DP
type: SiteQuality
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.862049227246709e-5
allele num: 34940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10934
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3566
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

MQ
type: SiteQuality
SIO_000300: 5.594e1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.346e1

DP
type: SiteQuality
SIO_000300: 7.84514e5

VQSLOD
type: SiteQuality
SIO_000300: -9.530999999999999e-1

GenotypeQuality
all individuals: 2842
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3957
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6830
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4046
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26035
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.799208348326736e-4
allele num: 5558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.313e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.875e-1

QD
type: SiteQuality
SIO_000300: 1.156e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 7.79394e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.676e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.52e-2

GenotypeQuality
all individuals: 1317
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3839
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1722
bin: 9.75e1
variant carriers: 17

GenotypeQuality
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variant carriers: 4

GenotypeQuality
all individuals: 571
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variant carriers: 1

GenotypeQuality
all individuals: 3989
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1960
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 329
bin: 8.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 563
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7114
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3976
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34040
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 4.017531044558071e-3
allele num: 5476
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.325581395348837e-3
allele num: 430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1616
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.41e-2

FS
type: SiteQuality
SIO_000300: 5.51e-1

MQ
type: SiteQuality
SIO_000300: 5.811e1

VQSLOD
type: SiteQuality
SIO_000300: 2.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

QD
type: SiteQuality
SIO_000300: 1.268e1

DP
type: SiteQuality
SIO_000300: 7.74409e5

GenotypeQuality
all individuals: 3861
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 344
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 328
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24498
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 556
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 478
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variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3786
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3770
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 7358
bin: 7.5e0
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 725
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 557
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.519849230956289e-4
allele num: 32898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1574
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 1.313715186547557e-3
allele num: 3806
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.78e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

DP
type: SiteQuality
SIO_000300: 7.77728e5

QD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.71e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

GenotypeQuality
all individuals: 3285
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1720
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 7358
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3327
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3861
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 328
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 556
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24498
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 1

GenotypeQuality
all individuals: 725
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3786
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1701
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 2.431758769530063e-4
allele num: 32898
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.358490566037736e-3
allele num: 424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5316
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.627430373095113e-4
allele num: 3806
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.103662321539416e-4
allele num: 3222
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.78e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

QD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.57e-1

MQ
type: SiteQuality
SIO_000300: 5.71e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

DP
type: SiteQuality
SIO_000300: 7.77728e5

GenotypeQuality
all individuals: 1973
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4325
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3827
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GenotypeQuality
all individuals: 561
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variant carriers: 0

GenotypeQuality
all individuals: 22854
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GenotypeQuality
all individuals: 348
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variant carriers: 3

GenotypeQuality
all individuals: 1693
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GenotypeQuality
all individuals: 229
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GenotypeQuality
all individuals: 602
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variant carriers: 0

GenotypeQuality
all individuals: 3882
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variant carriers: 1

GenotypeQuality
all individuals: 7465
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GenotypeQuality
all individuals: 1279
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GenotypeQuality
all individuals: 3747
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variant carriers: 2

GenotypeQuality
all individuals: 610
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GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3308
bin: 6.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32344
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 9.560229445506692e-4
allele num: 3138
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 3.422053231939164e-3
allele num: 5260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10714
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.369668246445498e-3
allele num: 422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3700
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.78e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

FS
type: SiteQuality
SIO_000300: 1.915e0

MQ
type: SiteQuality
SIO_000300: 5.82e1

VQSLOD
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.317e1

DP
type: SiteQuality
SIO_000300: 7.74049e5

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 411
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GenotypeQuality
all individuals: 4094
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GenotypeQuality
all individuals: 627
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1732
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variant carriers: 1

GenotypeQuality
all individuals: 349
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.964719833975689e-5
allele num: 33730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3308
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.99e-1

DP
type: SiteQuality
SIO_000300: 7.70742e5

QD
type: SiteQuality
SIO_000300: 1.397e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.701e0

MQ
type: SiteQuality
SIO_000300: 5.777e1

GenotypeQuality
all individuals: 2911
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 570
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GenotypeQuality
all individuals: 738
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

QD
type: SiteQuality
SIO_000300: 2.49e0

VQSLOD
type: SiteQuality
SIO_000300: -2.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 7.65747e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.613e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.71e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-2

GenotypeQuality
all individuals: 4144
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 753
bin: 4.75e1
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GenotypeQuality
all individuals: 513
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GenotypeQuality
all individuals: 692
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2995
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7525
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 7.25e1
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GenotypeQuality
all individuals: 1730
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1278
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32232
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.67e-2

QD
type: SiteQuality
SIO_000300: 2.13e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.65541e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.226e0

GenotypeQuality
all individuals: 1106
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4192
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3006
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.14228255404726e-5
allele num: 31824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10680
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.92e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.134e0

MQ
type: SiteQuality
SIO_000300: 5.725e1

FS
type: SiteQuality
SIO_000300: 9.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.218e0

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

QD
type: SiteQuality
SIO_000300: 8.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.26e-1

DP
type: SiteQuality
SIO_000300: 7.66143e5

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 19800
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2920
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3026
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 8.403361344537816e-4
allele num: 3570
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.84e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.74e-1

MQ
type: SiteQuality
SIO_000300: 5.798e1

MQRankSum
type: SiteQuality
SIO_000300: 6.37e-1

FS
type: SiteQuality
SIO_000300: 3.503e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 7.6498e5

QD
type: SiteQuality
SIO_000300: 1.381e1

GenotypeQuality
all individuals: 1278
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7502
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.159757330637007e-5
allele num: 31648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3566
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 6.711409395973154e-4
allele num: 2980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10700
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.73e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

VQSLOD
type: SiteQuality
SIO_000300: -1.01e0

FS
type: SiteQuality
SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 7.64633e5

GenotypeQuality
all individuals: 1285
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2201
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4062
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1532
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.518e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 7.43e0

DP
type: SiteQuality
SIO_000300: 7.66269e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.71e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.373e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1