9-33953429-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953429
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953429
    reference: chr 9
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.910C>G
  hgvsp: ENSP00000354039.1:p.Gln304Glu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.154C>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.473C>G
  hgvsp: ENSP00000412954.2:p.Gln159Glu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.910C>G
  hgvsp: ENSP00000416932.1:p.Gln304Glu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.175C>G
  hgvsp: ENSP00000439329.1:p.Gln59Glu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.751C>G
  hgvsp: ENSP00000404436.2:p.Gln251Glu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.910C>G
  hgvsp: ENSP00000368540.1:p.Gln304Glu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.109C>G
  hgvsp: ENSP00000368541.4:p.Gln37Glu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.751C>G
  hgvsp: ENSP00000414800.1:p.Gln251Glu
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln304Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP

9-33953433-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953433
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953433
    reference: chr 9
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.906C>T
  hgvsp: ENST00000360802.1:c.906C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.469C>T
  hgvsp: ENST00000421278.2:c.469C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.747C>T
  hgvsp: ENST00000412543.1:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.150C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.105C>T
  hgvsp: ENST00000379239.4:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.747C>T
  hgvsp: ENST00000418786.2:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.906C>T
  hgvsp: ENST00000449054.1:c.906C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.906C>T
  hgvsp: ENST00000379238.1:c.906C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.171C>T
  hgvsp: ENST00000539807.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His302His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

9-33953435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953435
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953435
    reference: chr 9
allele count: 17
allele frequency: 1.40236256846829e-4
allele num: 121224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.745C>T
  hgvsp: ENSP00000414800.1:p.His249Tyr
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.169C>T
  hgvsp: ENSP00000439329.1:p.His57Tyr
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.148C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.904C>T
  hgvsp: ENSP00000354039.1:p.His302Tyr
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.745C>T
  hgvsp: ENSP00000404436.2:p.His249Tyr
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.904C>T
  hgvsp: ENSP00000416932.1:p.His302Tyr
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.103C>T
  hgvsp: ENSP00000368541.4:p.His35Tyr
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.904C>T
  hgvsp: ENSP00000368540.1:p.His302Tyr
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.467C>T
  hgvsp: ENSP00000412954.2:p.His157Tyr
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13483
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5414
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His302Tyr
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

9-33953437-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953437
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953437
    reference: chr 9
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.465C>T
  hgvsp: ENSP00000412954.2:p.Pro156Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.902C>T
  hgvsp: ENSP00000416932.1:p.Pro301Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.743C>T
  hgvsp: ENSP00000404436.2:p.Pro248Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.902C>T
  hgvsp: ENSP00000354039.1:p.Pro301Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.101C>T
  hgvsp: ENSP00000368541.4:p.Pro34Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.743C>T
  hgvsp: ENSP00000414800.1:p.Pro248Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.146C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.167C>T
  hgvsp: ENSP00000439329.1:p.Pro56Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.902C>T
  hgvsp: ENSP00000368540.1:p.Pro301Leu
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40687
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro301Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/9-33953441-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953441
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953441
    reference: chr 9
allele count: 1
allele frequency: 8.254230293025175e-6
allele num: 121150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.461G>T
  hgvsp: ENSP00000412954.2:p.Val155Phe
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.898G>T
  hgvsp: ENSP00000368540.1:p.Val300Phe
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.898G>T
  hgvsp: ENSP00000354039.1:p.Val300Phe
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.97G>T
  hgvsp: ENSP00000368541.4:p.Val33Phe
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.142G>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.163G>T
  hgvsp: ENSP00000439329.1:p.Val55Phe
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.898G>T
  hgvsp: ENSP00000416932.1:p.Val300Phe
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.739G>T
  hgvsp: ENSP00000414800.1:p.Val247Phe
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.739G>T
  hgvsp: ENSP00000404436.2:p.Val247Phe
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val300Phe
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

9-33953441-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953441
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953441
    reference: chr 9
allele count: 12
allele frequency: 9.90507635163021e-5
allele num: 121150
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.461G>C
  hgvsp: ENSP00000412954.2:p.Val155Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.898G>C
  hgvsp: ENSP00000416932.1:p.Val300Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.739G>C
  hgvsp: ENSP00000414800.1:p.Val247Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.97G>C
  hgvsp: ENSP00000368541.4:p.Val33Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.142G>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.898G>C
  hgvsp: ENSP00000368540.1:p.Val300Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.898G>C
  hgvsp: ENSP00000354039.1:p.Val300Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.163G>C
  hgvsp: ENSP00000439329.1:p.Val55Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.739G>C
  hgvsp: ENSP00000404436.2:p.Val247Leu
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13466
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47314
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val300Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

9-33953445-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953445
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953445
    reference: chr 9
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.138G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.93G>A
  hgvsp: ENST00000379239.4:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.894G>A
  hgvsp: ENST00000360802.1:c.894G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.735G>A
  hgvsp: ENST00000418786.2:c.735G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.735G>A
  hgvsp: ENST00000412543.1:c.735G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.894G>A
  hgvsp: ENST00000449054.1:c.894G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.894G>A
  hgvsp: ENST00000379238.1:c.894G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.457G>A
  hgvsp: ENST00000421278.2:c.457G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.159G>A
  hgvsp: ENST00000539807.1:c.159G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47227
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys298Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

9-33953453-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953453
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953453
    reference: chr 9
allele count: 1
allele frequency: 8.263916435277007e-6
allele num: 121008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.727C>A
  hgvsp: ENSP00000404436.2:p.Leu243Ile
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.886C>A
  hgvsp: ENSP00000368540.1:p.Leu296Ile
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.886C>A
  hgvsp: ENSP00000416932.1:p.Leu296Ile
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.886C>A
  hgvsp: ENSP00000354039.1:p.Leu296Ile
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.130C>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.85C>A
  hgvsp: ENSP00000368541.4:p.Leu29Ile
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.727C>A
  hgvsp: ENSP00000414800.1:p.Leu243Ile
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.449C>A
  hgvsp: ENSP00000412954.2:p.Leu151Ile
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.151C>A
  hgvsp: ENSP00000439329.1:p.Leu51Ile
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40429
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu296Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS

9-33953476-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953476
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953476
    reference: chr 9
allele count: 1
allele frequency: 8.321682977165302e-6
allele num: 120168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.708-4T>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-4T>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-4T>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.867-4T>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.430-4T>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.867-4T>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.132-4T>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.708-4T>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.867-4T>A
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 2.25e1
  variant carriers: 0
hgvs: c.867-4T>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

9-33953485-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953485
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953485
    reference: chr 9
allele count: 1
allele frequency: 8.369041242635244e-6
allele num: 119488
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.430-13T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.867-13T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.708-13T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.132-13T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-13T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.867-13T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.708-13T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-13T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.867-13T>C
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37200
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4960
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

9-33953487-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953487
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953487
    reference: chr 9
allele count: 1
allele frequency: 8.385884878572387e-6
allele num: 119248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.708-15T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.867-15T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.708-15T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.867-15T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.867-15T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.430-15T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.132-15T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-15T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-15T>C
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2776
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41665
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

9-33953491-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953491
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953491
    reference: chr 9
allele count: 1
allele frequency: 8.406610958858046e-6
allele num: 118954
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-19T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.430-19T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.867-19T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.708-19T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.132-19T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.867-19T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.867-19T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.708-19T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-19T>C
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39511
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

9-33953496-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953496
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953496
    reference: chr 9
allele count: 3
allele frequency: 2.52784846391075e-5
allele num: 118678
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.867-24C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-24C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.132-24C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.430-24C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.867-24C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.708-24C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.867-24C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-24C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.708-24C>T
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32580
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37015
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

9-33953500-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953500
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953500
    reference: chr 9
allele count: 11
allele frequency: 9.300752515430794e-5
allele num: 118270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.708-28G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.708-28G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.867-28G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.132-28G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.867-28G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.867-28G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.430-28G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-28G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-28G>A
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28702
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10284
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4003
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 4612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

9-33953501-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953501
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953501
    reference: chr 9
allele count: 9
allele frequency: 7.603149393437637e-5
allele num: 118372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.867-29T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-29T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.430-29T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.867-29T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.867-29T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.132-29T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-29T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.708-29T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.708-29T>C
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28778
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10321
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

9-33953506-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953506
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953506
    reference: chr 9
allele count: 1
allele frequency: 8.483347189467077e-6
allele num: 117878
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.708-34A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-34A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.430-34A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.708-34A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.867-34A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-34A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.867-34A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.867-34A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.132-34A>G
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4789
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4206
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

9-33953506-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953506
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953506
    reference: chr 9
allele count: 22
allele frequency: 1.866336381682757e-4
allele num: 117878
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.867-34A>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.867-34A>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.867-34A>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.430-34A>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.708-34A>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-34A>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.708-34A>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.132-34A>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-34A>C
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9729
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9268
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26034
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD

9-33953510-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33953510
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33953510
    reference: chr 9
allele count: 1
allele frequency: 8.535190590805893e-6
allele num: 117162
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.867-38G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.430-38G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.708-38G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-38G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.867-38G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.867-38G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-38G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.132-38G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.708-38G>A
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22575
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5318
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

9-33956034-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956034
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956034
    reference: chr 9
allele count: 26
allele frequency: 2.144860584062036e-4
allele num: 121220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.866+43A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.866+43A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.707+43A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.429+43A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.866+43A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.707+43A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2562A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2562A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.131+43A>T
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7007
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 25214
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10078
  bin: 9.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

9-33956055-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956055
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956055
    reference: chr 9
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.866+22A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2583A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.131+22A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.707+22A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.866+22A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2583A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.707+22A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.429+22A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.866+22A>T
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16586
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3376
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26190
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

9-33956096-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956096
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956096
    reference: chr 9
allele count: 53
allele frequency: 4.366380517704437e-4
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.112C>A
  hgvsp: ENSP00000439329.1:p.His38Asn
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.688C>A
  hgvsp: ENSP00000404436.2:p.His230Asn
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.847C>A
  hgvsp: ENSP00000368540.1:p.His283Asn
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.688C>A
  hgvsp: ENSP00000414800.1:p.His230Asn
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2624C>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.410C>A
  hgvsp: ENSP00000412954.2:p.His138Asn
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2624C>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.847C>A
  hgvsp: ENSP00000354039.1:p.His283Asn
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.847C>A
  hgvsp: ENSP00000416932.1:p.His283Asn
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 9.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9513
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His283Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-33956113-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956113
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956113
    reference: chr 9
allele count: 3
allele frequency: 2.471536142096851e-5
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.671C>G
  hgvsp: ENSP00000414800.1:p.Ser224Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2641C>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.671C>G
  hgvsp: ENSP00000404436.2:p.Ser224Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.830C>G
  hgvsp: ENSP00000368540.1:p.Ser277Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.95C>G
  hgvsp: ENSP00000439329.1:p.Ser32Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2641C>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.393C>G
  hgvsp: ENSP00000412954.2:p.Ser132Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.830C>G
  hgvsp: ENSP00000354039.1:p.Ser277Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.830C>G
  hgvsp: ENSP00000416932.1:p.Ser277Cys
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser277Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-33956116-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956116
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956116
    reference: chr 9
allele count: 2
allele frequency: 1.647717910693689e-5
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.668C>T
  hgvsp: ENSP00000414800.1:p.Ser223Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2644C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.668C>T
  hgvsp: ENSP00000404436.2:p.Ser223Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2644C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.827C>T
  hgvsp: ENSP00000354039.1:p.Ser276Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.827C>T
  hgvsp: ENSP00000368540.1:p.Ser276Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.92C>T
  hgvsp: ENSP00000439329.1:p.Ser31Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.390C>T
  hgvsp: ENSP00000412954.2:p.Ser131Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.827C>T
  hgvsp: ENSP00000416932.1:p.Ser276Leu
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26523
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser276Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-33956119-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956119
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956119
    reference: chr 9
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2647C>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.824C>A
  hgvsp: ENSP00000354039.1:p.Ala275Asp
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.824C>A
  hgvsp: ENSP00000416932.1:p.Ala275Asp
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.824C>A
  hgvsp: ENSP00000368540.1:p.Ala275Asp
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2647C>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.665C>A
  hgvsp: ENSP00000414800.1:p.Ala222Asp
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.387C>A
  hgvsp: ENSP00000412954.2:p.Ala130Asp
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.89C>A
  hgvsp: ENSP00000439329.1:p.Ala30Asp
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.665C>A
  hgvsp: ENSP00000404436.2:p.Ala222Asp
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala275Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

9-33956121-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956121
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956121
    reference: chr 9
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.87T>C
  hgvsp: ENST00000539807.1:c.87T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.822T>C
  hgvsp: ENST00000449054.1:c.822T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.663T>C
  hgvsp: ENST00000412543.1:c.663T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.663T>C
  hgvsp: ENST00000418786.2:c.663T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.822T>C
  hgvsp: ENST00000360802.1:c.822T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.822T>C
  hgvsp: ENST00000379238.1:c.822T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.385T>C
  hgvsp: ENST00000421278.2:c.385T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2649T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2649T>C
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr274Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

9-33956130-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956130
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956130
    reference: chr 9
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.813G>C
  hgvsp: ENSP00000416932.1:p.Lys271Asn
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.78G>C
  hgvsp: ENSP00000439329.1:p.Lys26Asn
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.813G>C
  hgvsp: ENSP00000354039.1:p.Lys271Asn
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2658G>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.654G>C
  hgvsp: ENSP00000414800.1:p.Lys218Asn
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.813G>C
  hgvsp: ENSP00000368540.1:p.Lys271Asn
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.654G>C
  hgvsp: ENSP00000404436.2:p.Lys218Asn
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.376G>C
  hgvsp: ENSP00000412954.2:p.Lys126Asn
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2658G>C
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4573
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys271Asn
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

9-33956150-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956150
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956151
    reference: chr 9
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.362-7dupC
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.640-7dupC
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.799-7dupC
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.799-7dupC
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.640-7dupC
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-7dupC
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2679dupC
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.799-7dupC
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2679dupC
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
hgvs: c.799-7dupC
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

9-33956153-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956153
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956153
    reference: chr 9
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-9T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.640-9T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.799-9T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.799-9T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2681T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.640-9T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.362-9T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2681T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.799-9T>C
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26117
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

9-33956154-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956154
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956154
    reference: chr 9
allele count: 3
allele frequency: 2.47520667975776e-5
allele num: 121202
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.362-10T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-10T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2682T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.799-10T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2682T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.799-10T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.640-10T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.799-10T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.640-10T>C
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4569
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

9-33956157-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956157
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956157
    reference: chr 9
allele count: 1
allele frequency: 8.257501940512956e-6
allele num: 121102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.799-13A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2685A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.799-13A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.640-13A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.362-13A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2685A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-13A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.640-13A>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.799-13A>T
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3208
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3345
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

9-33956157-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956157
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956157
    reference: chr 9
allele count: 3
allele frequency: 2.477250582153887e-5
allele num: 121102
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2685A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.799-13A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.799-13A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.640-13A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.362-13A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.799-13A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.640-13A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2685A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-13A>G
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4542
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

9-33956158-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956158
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956158
    reference: chr 9
allele count: 9
allele frequency: 7.430156528630869e-5
allele num: 121128
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.640-14A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2686A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-14A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2686A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.799-14A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.799-14A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.799-14A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.640-14A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.362-14A>G
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9993
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26003
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

9-33956171-CTTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956171
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956168
    reference: chr 9
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.362-30_362-28delTAA
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.799-30_799-28delTAA
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2702_111-2700delTAA
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.799-30_799-28delTAA
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2702_66-2700delTAA
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.799-30_799-28delTAA
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.640-30_640-28delTAA
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-30_64-28delTAA
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.640-30_640-28delTAA
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8632
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: CTTA
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-33956173-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956173
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956173
    reference: chr 9
allele count: 1
allele frequency: 8.289399515899069e-6
allele num: 120636
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2701A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.640-29A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2701A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.640-29A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.799-29A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.799-29A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.799-29A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-29A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.362-29A>G
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22199
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/9-33956174-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956174
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956174
    reference: chr 9
allele count: 2
allele frequency: 1.658017342861406e-5
allele num: 120626
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.640-30T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.799-30T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.799-30T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-30T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2702T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2702T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.640-30T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.799-30T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.362-30T>G
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22436
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum

9-33956180-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956180
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956180
    reference: chr 9
allele count: 1
allele frequency: 8.314210648840998e-6
allele num: 120276
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.799-36G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.799-36G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.362-36G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.640-36G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.799-36G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-36G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.640-36G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2708G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2708G>A
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12452
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

9-33956186-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956186
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956186
    reference: chr 9
allele count: 1
allele frequency: 8.335834083558401e-6
allele num: 119964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.799-42T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.640-42T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.799-42T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-42T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.362-42T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.640-42T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.799-42T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2714T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2714T>C
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9929
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/9-33956191-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956191
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956191
    reference: chr 9
allele count: 8
allele frequency: 6.684491978609626e-5
allele num: 119680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2719T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.362-47T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-47T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.640-47T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.799-47T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.640-47T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2719T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.799-47T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.799-47T>G
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11166
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7694
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9560
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6005
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9934
  bin: 9.75e1
  variant carriers: 8
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-33956193-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956193
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956193
    reference: chr 9
allele count: 1
allele frequency: 8.364840900726069e-6
allele num: 119548
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-49G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.362-49G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2721G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.799-49G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.640-49G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.799-49G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.799-49G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.640-49G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2721G>A
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11766
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9925
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3054
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

9-33956194-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33956194
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33956194
    reference: chr 9
allele count: 1
allele frequency: 8.367360599772408e-6
allele num: 119512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.799-50G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.111-2722G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-50G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.66-2722G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.362-50G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.640-50G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.799-50G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.640-50G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.799-50G>A
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9122
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3422
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9754
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/9-33960778-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960778
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960777
    reference: chr 9
allele count: 22154
allele frequency: 3.086461032628382e-1
allele num: 71778
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.798+45delT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4635delT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.110+45delT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.361+45delT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.639+45delT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.639+45delT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.798+45delT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.65+45delT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.798+45delT
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 2.25e1
  variant carriers: 5750
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 4.25e1
  variant carriers: 1384
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 1.75e1
  variant carriers: 3457
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.75e1
  variant carriers: 687
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 1.25e1
  variant carriers: 1104
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 3.75e1
  variant carriers: 2557
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 419
genotype depth: GenotypeDepth
  all individuals: 12268
  bin: 2.75e1
  variant carriers: 5822
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.75e1
  variant carriers: 239
genotype depth: GenotypeDepth
  all individuals: 9631
  bin: 3.25e1
  variant carriers: 4370
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 3.75e1
  variant carriers: 1369
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 2.75e1
  variant carriers: 1419
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 4.25e1
  variant carriers: 1362
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 1.25e1
  variant carriers: 1134
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 5.25e1
  variant carriers: 1200
genotype quality: GenotypeQuality
  all individuals: 3170
  bin: 7.5e0
  variant carriers: 1155
num of homozygotes: 12
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: CA
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/9-33960778-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960778
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960779
    reference: chr 9
allele count: 6619
allele frequency: 9.221488478363844e-2
allele num: 71778
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.65+45dupT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.798+45dupT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.639+45dupT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.798+45dupT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.110+45dupT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.361+45dupT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4635dupT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.639+45dupT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.798+45dupT
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.75e1
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9631
  bin: 3.25e1
  variant carriers: 1263
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 2.25e1
  variant carriers: 1928
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 1.25e1
  variant carriers: 539
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 1.75e1
  variant carriers: 1429
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 3.75e1
  variant carriers: 711
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 4.25e1
  variant carriers: 352
genotype depth: GenotypeDepth
  all individuals: 12268
  bin: 2.75e1
  variant carriers: 1742
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 2.75e1
  variant carriers: 560
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 5.75e1
  variant carriers: 401
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 3.25e1
  variant carriers: 521
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 1.25e1
  variant carriers: 493
genotype quality: GenotypeQuality
  all individuals: 2908
  bin: 2.25e1
  variant carriers: 539
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 4.25e1
  variant carriers: 445
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/9-33960778-C-CAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960778
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960780
    reference: chr 9
allele count: 138
allele frequency: 1.922594666889576e-3
allele num: 71778
alternate allele: CAA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.798+44_798+45dupTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.798+44_798+45dupTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.110+44_110+45dupTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.798+44_798+45dupTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.361+44_361+45dupTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4636_64-4635dupTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.639+44_639+45dupTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.639+44_639+45dupTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.65+44_65+45dupTT
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 9631
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 1.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 2.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12268
  bin: 2.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 1.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 3.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2773
  bin: 1.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 2.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2908
  bin: 2.25e1
  variant carriers: 10
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/9-33960778-C-CAAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960778
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960782
    reference: chr 9
allele count: 1104
allele frequency: 1.538075733511661e-2
allele num: 71778
alternate allele: CAAAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.639+42_639+45dupTTTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.798+42_798+45dupTTTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.65+42_65+45dupTTTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4638_64-4635dupTTTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.361+42_361+45dupTTTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.798+42_798+45dupTTTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.639+42_639+45dupTTTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.798+42_798+45dupTTTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.110+42_110+45dupTTTT
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 9631
  bin: 3.25e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 1.25e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 4.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 12268
  bin: 2.75e1
  variant carriers: 366
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 2.25e1
  variant carriers: 426
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 3.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 1.75e1
  variant carriers: 372
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2773
  bin: 1.75e1
  variant carriers: 137
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 2.75e1
  variant carriers: 121
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 4.25e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 6.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 3170
  bin: 7.5e0
  variant carriers: 175
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 3.75e1
  variant carriers: 97
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/9-33960778-C-CAAAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960778
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960783
    reference: chr 9
allele count: 275
allele frequency: 3.831257488366909e-3
allele num: 71778
alternate allele: CAAAAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.798+41_798+45dupTTTTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.639+41_639+45dupTTTTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.65+41_65+45dupTTTTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.361+41_361+45dupTTTTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.639+41_639+45dupTTTTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4639_64-4635dupTTTTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.798+41_798+45dupTTTTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.798+41_798+45dupTTTTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.110+41_110+45dupTTTTT
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 9631
  bin: 3.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 1.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12268
  bin: 2.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 1.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 2.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15571
  bin: 2.5e0
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 3.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 4.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 6.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2908
  bin: 2.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 1.25e1
  variant carriers: 27
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/9-33960778-CAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960778
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960776
    reference: chr 9
allele count: 1123
allele frequency: 1.564546239794923e-2
allele num: 71778
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4636_64-4635delTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.65+44_65+45delTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.798+44_798+45delTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.639+44_639+45delTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.110+44_110+45delTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.361+44_361+45delTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.798+44_798+45delTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.798+44_798+45delTT
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.639+44_639+45delTT
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 1.75e1
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 4.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 9631
  bin: 3.25e1
  variant carriers: 299
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 3.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 12268
  bin: 2.75e1
  variant carriers: 375
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 2.25e1
  variant carriers: 367
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 1.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 4.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 8.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 3170
  bin: 7.5e0
  variant carriers: 140
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 3.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 2.75e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 2773
  bin: 1.75e1
  variant carriers: 111
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: CAA
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/9-33960780-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960780
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960780
    reference: chr 9
allele count: 2
allele frequency: 5.983008256551394e-5
allele num: 33428
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.798+44T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.110+44T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.639+44T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.65+44T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.798+44T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.798+44T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.639+44T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4636T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.361+44T>G
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7897
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8112
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6986
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6420
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2066
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-33960787-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960787
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960787
    reference: chr 9
allele count: 1
allele frequency: 8.294074713025015e-6
allele num: 120568
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.639+37T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.798+37T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.639+37T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.65+37T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.798+37T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.798+37T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.110+37T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.361+37T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4643T>G
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3895
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2772
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7576
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

9-33960790-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960790
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960790
    reference: chr 9
allele count: 280
allele frequency: 2.322340919647004e-3
allele num: 120568
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.798+34T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.361+34T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4646T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.65+34T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.639+34T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.798+34T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.798+34T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.110+34T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.639+34T>C
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 2.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6863
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9537
  bin: 3.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 10464
  bin: 3.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 3885
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4197
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7455
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 3
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

9-33960793-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960793
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960792
    reference: chr 9
allele count: 5
allele frequency: 4.197095609837992e-5
allele num: 119130
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.639+30delC
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.65+30delC
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.110+30delC
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.639+30delC
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.361+30delC
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.798+30delC
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.798+30delC
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.798+30delC
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4650delC
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6900
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9863
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4909
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: AG
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

9-33960794-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960794
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960794
    reference: chr 9
allele count: 912
allele frequency: 1.497635312664214e-2
allele num: 60896
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.798+30C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.798+30C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4650C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.639+30C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.361+30C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.798+30C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.639+30C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.110+30C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.65+30C>T
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 5.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7625
  bin: 3.25e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 6.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 7261
  bin: 4.75e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 8494
  bin: 3.75e1
  variant carriers: 231
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5364
  bin: 2.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 4.25e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 5622
  bin: 5.25e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 2.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 6.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 3.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 2.25e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 5.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 1.25e1
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 7.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 2.75e1
  variant carriers: 73
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

9-33960801-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960801
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960801
    reference: chr 9
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.65+23G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.798+23G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.798+23G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.639+23G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4657G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.361+23G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.639+23G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.110+23G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.798+23G>A
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8770
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7591
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3847
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4623
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5440
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

9-33960808-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960808
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960808
    reference: chr 9
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.798+16C>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.361+16C>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.110+16C>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.65+16C>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.639+16C>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.798+16C>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.798+16C>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4664C>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.639+16C>G
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4684
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD

9-33960811-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960811
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960811
    reference: chr 9
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.798+13T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.110+13T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.639+13T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.798+13T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.65+13T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.361+13T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.639+13T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4667T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.798+13T>C
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7602
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26205
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5630
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

9-33960824-ATCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960824
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960821
    reference: chr 9
allele count: 9
allele frequency: 7.420110147412856e-5
allele num: 121292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.107_109delAGA
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.636_638delAGA
  hgvsp: ENSP00000414800.1:p.Glu212del
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.795_797delAGA
  hgvsp: ENSP00000354039.1:p.Glu265del
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.358_360delAGA
  hgvsp: ENSP00000412954.2:p.Glu120del
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.795_797delAGA
  hgvsp: ENSP00000416932.1:p.Glu265del
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.62_64delAGA
  hgvsp: ENSP00000368541.4:p.Lys21del
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.636_638delAGA
  hgvsp: ENSP00000404436.2:p.Glu212del
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.795_797delAGA
  hgvsp: ENSP00000368540.1:p.Glu265del
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4683_64-4681delAGA
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7603
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8802
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26228
  bin: 9.75e1
  variant carriers: 9
hgvs: p.Glu265del
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: ATCT
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-33960835-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960835
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960835
    reference: chr 9
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.787T>C
  hgvsp: ENSP00000416932.1:p.Trp263Arg
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.628T>C
  hgvsp: ENSP00000414800.1:p.Trp210Arg
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.350T>C
  hgvsp: ENSP00000412954.2:p.Trp118Arg
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.787T>C
  hgvsp: ENSP00000368540.1:p.Trp263Arg
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.787T>C
  hgvsp: ENSP00000354039.1:p.Trp263Arg
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4691T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.54T>C
  hgvsp: ENST00000379239.4:c.54T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.99T>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.628T>C
  hgvsp: ENSP00000404436.2:p.Trp210Arg
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4422
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9133
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Trp263Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

9-33960838-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960838
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960838
    reference: chr 9
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.784G>C
  hgvsp: ENSP00000354039.1:p.Asp262His
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.625G>C
  hgvsp: ENSP00000404436.2:p.Asp209His
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.784G>C
  hgvsp: ENSP00000368540.1:p.Asp262His
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.347G>C
  hgvsp: ENSP00000412954.2:p.Asp117His
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.784G>C
  hgvsp: ENSP00000416932.1:p.Asp262His
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4694G>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.96G>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.51G>C
  hgvsp: ENSP00000368541.4:p.Lys17Asn
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.625G>C
  hgvsp: ENSP00000414800.1:p.Asp209His
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8806
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3879
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp262His
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP

9-33960844-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960844
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960844
    reference: chr 9
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4700A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.90A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.619A>G
  hgvsp: ENSP00000404436.2:p.Thr207Ala
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.341A>G
  hgvsp: ENSP00000412954.2:p.Thr115Ala
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.619A>G
  hgvsp: ENSP00000414800.1:p.Thr207Ala
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.778A>G
  hgvsp: ENSP00000368540.1:p.Thr260Ala
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.778A>G
  hgvsp: ENSP00000416932.1:p.Thr260Ala
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.778A>G
  hgvsp: ENSP00000354039.1:p.Thr260Ala
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.45A>G
  hgvsp: ENST00000379239.4:c.45A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr260Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD

9-33960846-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960846
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960846
    reference: chr 9
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.617C>T
  hgvsp: ENSP00000404436.2:p.Thr206Ile
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4702C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.339C>T
  hgvsp: ENSP00000412954.2:p.Thr114Ile
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.776C>T
  hgvsp: ENSP00000354039.1:p.Thr259Ile
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.776C>T
  hgvsp: ENSP00000368540.1:p.Thr259Ile
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.617C>T
  hgvsp: ENSP00000414800.1:p.Thr206Ile
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.776C>T
  hgvsp: ENSP00000416932.1:p.Thr259Ile
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.88C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.43C>T
  hgvsp: ENSP00000368541.4:p.Gln15Ter
  variant of: http://identifiers.org/hgnc/14185
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5929
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26219
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4423
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln15Ter
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

9-33960848-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960848
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960848
    reference: chr 9
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.774G>C
  hgvsp: ENSP00000368540.1:p.Trp258Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.774G>C
  hgvsp: ENSP00000354039.1:p.Trp258Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.86G>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.337G>C
  hgvsp: ENSP00000412954.2:p.Trp113Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.41G>C
  hgvsp: ENSP00000368541.4:p.Gly14Ala
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.615G>C
  hgvsp: ENSP00000404436.2:p.Trp205Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.615G>C
  hgvsp: ENSP00000414800.1:p.Trp205Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.774G>C
  hgvsp: ENSP00000416932.1:p.Trp258Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4704G>C
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7596
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2961
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Trp258Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

9-33960852-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960852
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960852
    reference: chr 9
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.37A>C
  hgvsp: ENSP00000368541.4:p.Ser13Arg
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.333A>C
  hgvsp: ENSP00000412954.2:p.Glu112Ala
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.770A>C
  hgvsp: ENSP00000354039.1:p.Glu257Ala
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.82A>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4708A>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.611A>C
  hgvsp: ENSP00000414800.1:p.Glu204Ala
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.770A>C
  hgvsp: ENSP00000368540.1:p.Glu257Ala
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.770A>C
  hgvsp: ENSP00000416932.1:p.Glu257Ala
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.611A>C
  hgvsp: ENSP00000404436.2:p.Glu204Ala
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3879
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5663
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu257Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

9-33960856-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960856
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960856
    reference: chr 9
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.329G>C
  hgvsp: ENSP00000412954.2:p.Glu111Gln
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.766G>C
  hgvsp: ENSP00000416932.1:p.Glu256Gln
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4712G>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.766G>C
  hgvsp: ENSP00000368540.1:p.Glu256Gln
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.607G>C
  hgvsp: ENSP00000404436.2:p.Glu203Gln
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.78G>C
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.33G>C
  hgvsp: ENSP00000368541.4:p.Trp11Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.607G>C
  hgvsp: ENSP00000414800.1:p.Glu203Gln
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.766G>C
  hgvsp: ENSP00000354039.1:p.Glu256Gln
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4424
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu256Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum

http://identifiers.org/exac.variant/9-33960857-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960857
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960857
    reference: chr 9
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4713G>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.765G>T
  hgvsp: ENST00000360802.1:c.765G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.765G>T
  hgvsp: ENST00000379238.1:c.765G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.328G>T
  hgvsp: ENST00000421278.2:c.328G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.765G>T
  hgvsp: ENST00000449054.1:c.765G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.606G>T
  hgvsp: ENST00000418786.2:c.606G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.32G>T
  hgvsp: ENSP00000368541.4:p.Trp11Leu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.606G>T
  hgvsp: ENST00000412543.1:c.606G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.77G>T
  variant of: http://identifiers.org/hgnc/14185
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Trp11Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-33960860-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960860
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960860
    reference: chr 9
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.74T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.603T>G
  hgvsp: ENST00000418786.2:c.603T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.762T>G
  hgvsp: ENST00000360802.1:c.762T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.762T>G
  hgvsp: ENST00000379238.1:c.762T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.29T>G
  hgvsp: ENSP00000368541.4:p.Leu10Arg
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4716T>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.603T>G
  hgvsp: ENST00000412543.1:c.603T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.762T>G
  hgvsp: ENST00000449054.1:c.762T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.325T>G
  hgvsp: ENST00000421278.2:c.325T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5667
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu10Arg
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

9-33960868-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960868
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960868
    reference: chr 9
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.595A>G
  hgvsp: ENSP00000404436.2:p.Lys199Glu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4724A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.21A>G
  hgvsp: ENST00000379239.4:c.21A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.754A>G
  hgvsp: ENSP00000354039.1:p.Lys252Glu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.595A>G
  hgvsp: ENSP00000414800.1:p.Lys199Glu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.66A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.317A>G
  hgvsp: ENSP00000412954.2:p.Lys107Glu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.754A>G
  hgvsp: ENSP00000368540.1:p.Lys252Glu
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.754A>G
  hgvsp: ENSP00000416932.1:p.Lys252Glu
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3646
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4711
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys252Glu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/9-33960869-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960869
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960869
    reference: chr 9
allele count: 2
allele frequency: 1.647907980818351e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.753G>T
  hgvsp: ENSP00000416932.1:p.Trp251Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.753G>T
  hgvsp: ENSP00000354039.1:p.Trp251Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.65G>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.753G>T
  hgvsp: ENSP00000368540.1:p.Trp251Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.20G>T
  hgvsp: ENSP00000368541.4:p.Gly7Val
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.316G>T
  hgvsp: ENSP00000412954.2:p.Trp106Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.594G>T
  hgvsp: ENSP00000414800.1:p.Trp198Cys
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4725G>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.594G>T
  hgvsp: ENSP00000404436.2:p.Trp198Cys
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8798
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4423
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Trp251Cys
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

9-33960873-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960873
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960873
    reference: chr 9
allele count: 2
allele frequency: 1.647880825258717e-5
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.749C>T
  hgvsp: ENSP00000416932.1:p.Ala250Val
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4729C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.312C>T
  hgvsp: ENSP00000412954.2:p.Ala105Val
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.749C>T
  hgvsp: ENSP00000354039.1:p.Ala250Val
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.590C>T
  hgvsp: ENSP00000404436.2:p.Ala197Val
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.16C>T
  hgvsp: ENSP00000368541.4:p.Leu6Phe
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.749C>T
  hgvsp: ENSP00000368540.1:p.Ala250Val
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.61C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.590C>T
  hgvsp: ENSP00000414800.1:p.Ala197Val
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4708
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala250Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

9-33960874-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960874
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960874
    reference: chr 9
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.589G>A
  hgvsp: ENSP00000404436.2:p.Ala197Thr
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.748G>A
  hgvsp: ENSP00000368540.1:p.Ala250Thr
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.15G>A
  hgvsp: ENST00000379239.4:c.15G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.748G>A
  hgvsp: ENSP00000354039.1:p.Ala250Thr
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.311G>A
  hgvsp: ENSP00000412954.2:p.Ala105Thr
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.589G>A
  hgvsp: ENSP00000414800.1:p.Ala197Thr
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.748G>A
  hgvsp: ENSP00000416932.1:p.Ala250Thr
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.60G>A
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4730G>A
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala250Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

9-33960879-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960879
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960879
    reference: chr 9
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.13-3C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.58-3C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.746-3C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4735C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.587-3C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.746-3C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.587-3C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.746-3C>T
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.309-3C>T
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5667
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
hgvs: c.746-3C>T
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

9-33960880-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33960880
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33960880
    reference: chr 9
allele count: 3
allele frequency: 2.471699045924168e-5
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000439329
  ensembl transcript: ENST00000539807
  gene symbol: UBAP2
  hgvsc: ENST00000539807.1:c.64-4736A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368540
  ensembl transcript: ENST00000379238
  gene symbol: UBAP2
  hgvsc: ENST00000379238.1:c.746-4A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000404436
  ensembl transcript: ENST00000418786
  gene symbol: UBAP2
  hgvsc: ENST00000418786.2:c.587-4A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000354039
  ensembl transcript: ENST00000360802
  gene symbol: UBAP2
  hgvsc: ENST00000360802.1:c.746-4A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000416932
  ensembl transcript: ENST00000449054
  gene symbol: UBAP2
  hgvsc: ENST00000449054.1:c.746-4A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000412954
  ensembl transcript: ENST00000421278
  gene symbol: UBAP2
  hgvsc: ENST00000421278.2:c.309-4A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl transcript: ENST00000462799
  gene symbol: UBAP2
  hgvsc: ENST00000462799.1:n.58-4A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000414800
  ensembl transcript: ENST00000412543
  gene symbol: UBAP2
  hgvsc: ENST00000412543.1:c.587-4A>G
  variant of: http://identifiers.org/hgnc/14185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137073
  ensembl protein: ENSP00000368541
  ensembl transcript: ENST00000379239
  gene symbol: UBAP2
  hgvsc: ENST00000379239.4:c.13-4A>G
  variant of: http://identifiers.org/hgnc/14185
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 7.25e1
  variant carriers: 0
hgvs: c.746-4A>G
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5441
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1599
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47420
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2479
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 1.244e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.259e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

MQRankSum
type: SiteQuality
SIO_000300: -2.091e0

DP
type: SiteQuality
SIO_000300: 1.499992e6

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47429
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2479
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 925
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5421
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1590
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.831e0

VQSLOD
type: SiteQuality
SIO_000300: -2.221e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.499631e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.98e-1

FS
type: SiteQuality
SIO_000300: 1.1735e1

QD
type: SiteQuality
SIO_000300: 1.065e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 5.771e1

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47436
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1590
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2494
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.209921355111918e-3
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.350256548744261e-4
allele num: 66654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

QD
type: SiteQuality
SIO_000300: 1.149e1

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.981e0

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

FS
type: SiteQuality
SIO_000300: 5.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

DP
type: SiteQuality
SIO_000300: 1.499825e6

GenotypeQuality
all individuals: 1589
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47420
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5416
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2479
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.252e0

DP
type: SiteQuality
SIO_000300: 1.499026e6

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 6.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

VQSLOD
type: SiteQuality
SIO_000300: -1.721e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

GenotypeQuality
all individuals: 244
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47314
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5387
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2491
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 2.535e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

DP
type: SiteQuality
SIO_000300: 1.498548e6

QD
type: SiteQuality
SIO_000300: 1.19e1

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5387
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2491
bin: 9.75e1
variant carriers: 12

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.80099054479964e-4
allele num: 66630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.498548e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.535e0

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-2

GenotypeQuality
all individuals: 5365
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2481
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.237e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

FS
type: SiteQuality
SIO_000300: 3.846e0

DP
type: SiteQuality
SIO_000300: 1.497283e6

VQSLOD
type: SiteQuality
SIO_000300: 8.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.369e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084945843981989e-5
allele num: 16434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.607e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.273e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.159e0

DP
type: SiteQuality
SIO_000300: 1.494555e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.729050279329609e-5
allele num: 11456
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.589e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 6.46e-1

FS
type: SiteQuality
SIO_000300: 2.427e0

DP
type: SiteQuality
SIO_000300: 1.472292e6

QD
type: SiteQuality
SIO_000300: 1.388e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515610791148833e-5
allele num: 65980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.129e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.02e-1

DP
type: SiteQuality
SIO_000300: 1.449704e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.22e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65878
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.338742393509128e-5
allele num: 15776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.141e0

MQRankSum
type: SiteQuality
SIO_000300: -1.447e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.715e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65730
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.720062208398134e-5
allele num: 10288
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65580
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.643171806167401e-4
allele num: 11350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.212e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.528350909368791e-4
allele num: 65430
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

Latino
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allele frequency: 8.84016973125884e-5
allele num: 11312
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6586
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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VQSLOD
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ClippingRankSum
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DP
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BaseQRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.956e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65468
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.444960041247745e-5
allele num: 15516
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
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East Asian
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allele count: 8
allele frequency: 9.583133684714902e-4
allele num: 8348
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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VQSLOD
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MQRankSum
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ClippingRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.203369434416366e-4
allele num: 8310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15306
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.51e0

DP
type: SiteQuality
SIO_000300: 1.325994e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.521e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 22

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2708
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531581204435459e-5
allele num: 65292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 2.050380785002929e-3
allele num: 10242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.325994e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.521e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.911067545891998e-5
allele num: 11222
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.291e0

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

DP
type: SiteQuality
SIO_000300: 1.301788e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.55e0

VQSLOD
type: SiteQuality
SIO_000300: 8.090000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

QD
type: SiteQuality
SIO_000300: 1.442e1

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4596
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.600144005760231e-4
allele num: 66664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.349e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

DP
type: SiteQuality
SIO_000300: 2.127459e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

GenotypeQuality
all individuals: 4576
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 3215
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GenotypeQuality
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GenotypeQuality
all individuals: 2014
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 9477
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.887e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.746e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.08e0

VQSLOD
type: SiteQuality
SIO_000300: -2.764e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.363e1

DP
type: SiteQuality
SIO_000300: 2.133329e6

GenotypeQuality
all individuals: 3214
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3376
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 53

GenotypeQuality
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GenotypeQuality
all individuals: 1433
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 52
allele frequency: 7.792830595851816e-4
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.166e1

VQSLOD
type: SiteQuality
SIO_000300: 5.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.347e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.139832e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 26529
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 2012
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variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63020030816641e-5
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.135927e6

MQRankSum
type: SiteQuality
SIO_000300: -9.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.555e1

MQ
type: SiteQuality
SIO_000300: 5.981e1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.77e-1

FS
type: SiteQuality
SIO_000300: 1.763e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10006
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926411096127914e-4
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.241e0

QD
type: SiteQuality
SIO_000300: 1.116e1

FS
type: SiteQuality
SIO_000300: 5.199e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

DP
type: SiteQuality
SIO_000300: 2.135718e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26524
bin: 6.25e1
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GenotypeQuality
all individuals: 4575
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.25e-1

FS
type: SiteQuality
SIO_000300: 2.664e0

DP
type: SiteQuality
SIO_000300: 2.135597e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.489e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.79e-1

QD
type: SiteQuality
SIO_000300: 1.216e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.06e-1

DP
type: SiteQuality
SIO_000300: 2.135523e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.057e0

VQSLOD
type: SiteQuality
SIO_000300: 6.35e-1

BaseQRankSum
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SIO_000300: 3.4e0

MQRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.448e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

DP
type: SiteQuality
SIO_000300: 2.13529e6

ClippingRankSum
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SIO_000300: -1.879e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.005e1

DP
type: SiteQuality
SIO_000300: 2.132495e6

VQSLOD
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SIO_000300: 2.48e0

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.122e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.494e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

QD
type: SiteQuality
SIO_000300: 1.25e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.67305088024763e-5
allele num: 10338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.839e1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -4.25e-1

FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.12974e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.5004500450045e-5
allele num: 66660
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
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MQ
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 3.477857639693948e-4
allele num: 8626
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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QD
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 1.043115438108484e-3
allele num: 8628
num of homozygotes: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66622
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505298651252408e-5
allele num: 66432
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.39e-1

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.735202492211838e-5
allele num: 10272
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66386
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
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QD
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ClippingRankSum
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BaseQRankSum
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FS
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SIO_000300: 1.4307e1

ReadPosRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
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DP
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.947419668938656e-4
allele num: 10270
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.926e0

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.78e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510847887834653e-5
allele num: 66188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.992269e6

MQRankSum
type: SiteQuality
SIO_000300: -9.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

QD
type: SiteQuality
SIO_000300: 2.3e0

VQSLOD
type: SiteQuality
SIO_000300: -6.424e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.24e-1

FS
type: SiteQuality
SIO_000300: 5.578e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.15e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514508996183437e-5
allele num: 66028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.398e1

MQ
type: SiteQuality
SIO_000300: 5.953e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.46e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.939917e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.63e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3030
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.914004914004914e-4
allele num: 16280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.915011e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.89e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65790
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.19161105815062e-4
allele num: 8392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.608e0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.93e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520542529574552e-5
allele num: 65766
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
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East Asian
type: Population
allele count: 0
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.834e0

DP
type: SiteQuality
SIO_000300: 1.90715e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 1289

GenotypeQuality
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variant carriers: 750

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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variant carriers: 1158

GenotypeQuality
all individuals: 2730
bin: 3.25e1
variant carriers: 1401

African
type: Population
allele count: 1694
allele frequency: 2.929782082324455e-1
allele num: 5782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12417
allele frequency: 3.13655653228251e-1
allele num: 39588
num of homozygotes: 11

European (Finnish)
type: Population
allele count: 1019
allele frequency: 2.618191161356629e-1
allele num: 3892
num of homozygotes: 1

Other
type: Population
allele count: 184
allele frequency: 3.32129963898917e-1
allele num: 554
num of homozygotes: 0

Latino
type: Population
allele count: 2158
allele frequency: 3.206537890044577e-1
allele num: 6730
num of homozygotes: 0

East Asian
type: Population
allele count: 1281
allele frequency: 2.657676348547718e-1
allele num: 4820
num of homozygotes: 0

South Asian
type: Population
allele count: 3401
allele frequency: 3.266423357664234e-1
allele num: 10412
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.659e1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-1

QD
type: SiteQuality
SIO_000300: 2.05e0

DP
type: SiteQuality
SIO_000300: 1.7383e6

GenotypeQuality
all individuals: 2334
bin: 4.75e1
variant carriers: 474

GenotypeQuality
all individuals: 1672
bin: 6.75e1
variant carriers: 324

GenotypeQuality
all individuals: 1122
bin: 8.25e1
variant carriers: 216

GenotypeQuality
all individuals: 2023
bin: 5.25e1
variant carriers: 440

GenotypeQuality
all individuals: 15571
bin: 2.5e0
variant carriers: 455

GenotypeQuality
all individuals: 856
bin: 9.25e1
variant carriers: 152

GenotypeQuality
all individuals: 966
bin: 8.75e1
variant carriers: 177

GenotypeQuality
all individuals: 3170
bin: 7.5e0
variant carriers: 555

GenotypeQuality
all individuals: 2535
bin: 3.75e1
variant carriers: 514

GenotypeQuality
all individuals: 1449
bin: 7.25e1
variant carriers: 271

GenotypeQuality
all individuals: 1817
bin: 6.25e1
variant carriers: 322

GenotypeQuality
all individuals: 7418
bin: 9.75e1
variant carriers: 1085

GenotypeQuality
all individuals: 1311
bin: 7.75e1
variant carriers: 235

GenotypeQuality
all individuals: 2773
bin: 1.75e1
variant carriers: 542

African
type: Population
allele count: 636
allele frequency: 1.099965409892771e-1
allele num: 5782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3375
allele frequency: 8.525310700212185e-2
allele num: 39588
num of homozygotes: 1

South Asian
type: Population
allele count: 1052
allele frequency: 1.010372646945832e-1
allele num: 10412
num of homozygotes: 0

Other
type: Population
allele count: 54
allele frequency: 9.747292418772563e-2
allele num: 554
num of homozygotes: 0

Latino
type: Population
allele count: 636
allele frequency: 9.450222882615156e-2
allele num: 6730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 360
allele frequency: 9.249743062692703e-2
allele num: 3892
num of homozygotes: 0

East Asian
type: Population
allele count: 506
allele frequency: 1.049792531120332e-1
allele num: 4820
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.57e-1

DP
type: SiteQuality
SIO_000300: 1.7383e6

MQ
type: SiteQuality
SIO_000300: 5.659e1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

QD
type: SiteQuality
SIO_000300: 2.05e0

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-1

GenotypeQuality
all individuals: 15571
bin: 2.5e0
variant carriers: 12

GenotypeQuality
all individuals: 3170
bin: 7.5e0
variant carriers: 19

GenotypeQuality
all individuals: 2535
bin: 3.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1449
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2837
bin: 1.25e1
variant carriers: 21

GenotypeQuality
all individuals: 2023
bin: 5.25e1
variant carriers: 10

GenotypeQuality
all individuals: 966
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1672
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1817
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1921
bin: 5.75e1
variant carriers: 14

GenotypeQuality
all individuals: 2334
bin: 4.75e1
variant carriers: 8

GenotypeQuality
all individuals: 7418
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 2357
bin: 4.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1311
bin: 7.75e1
variant carriers: 6

Latino
type: Population
allele count: 13
allele frequency: 1.931649331352155e-3
allele num: 6730
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 2.401075681905494e-3
allele num: 10412
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 2.075406433759945e-3
allele num: 5782
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 3.112033195020747e-3
allele num: 4820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 67
allele frequency: 1.692432050116197e-3
allele num: 39588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.541623843782117e-3
allele num: 3892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

QD
type: SiteQuality
SIO_000300: 2.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

DP
type: SiteQuality
SIO_000300: 1.7383e6

FS
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

MQ
type: SiteQuality
SIO_000300: 5.659e1

GenotypeQuality
all individuals: 15571
bin: 2.5e0
variant carriers: 179

GenotypeQuality
all individuals: 1921
bin: 5.75e1
variant carriers: 58

GenotypeQuality
all individuals: 1311
bin: 7.75e1
variant carriers: 39

GenotypeQuality
all individuals: 2837
bin: 1.25e1
variant carriers: 165

GenotypeQuality
all individuals: 2730
bin: 3.25e1
variant carriers: 100

GenotypeQuality
all individuals: 2334
bin: 4.75e1
variant carriers: 100

GenotypeQuality
all individuals: 966
bin: 8.75e1
variant carriers: 15

GenotypeQuality
all individuals: 1449
bin: 7.25e1
variant carriers: 40

GenotypeQuality
all individuals: 2908
bin: 2.25e1
variant carriers: 141

GenotypeQuality
all individuals: 1672
bin: 6.75e1
variant carriers: 53

GenotypeQuality
all individuals: 1122
bin: 8.25e1
variant carriers: 30

GenotypeQuality
all individuals: 7418
bin: 9.75e1
variant carriers: 92

GenotypeQuality
all individuals: 2023
bin: 5.25e1
variant carriers: 64

GenotypeQuality
all individuals: 856
bin: 9.25e1
variant carriers: 16

East Asian
type: Population
allele count: 84
allele frequency: 1.742738589211618e-2
allele num: 4820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 78
allele frequency: 2.004110996916752e-2
allele num: 3892
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 1.263537906137184e-2
allele num: 554
num of homozygotes: 0

Latino
type: Population
allele count: 100
allele frequency: 1.485884101040119e-2
allele num: 6730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 613
allele frequency: 1.548449024957058e-2
allele num: 39588
num of homozygotes: 0

African
type: Population
allele count: 93
allele frequency: 1.608439986163957e-2
allele num: 5782
num of homozygotes: 0

South Asian
type: Population
allele count: 129
allele frequency: 1.238955051863235e-2
allele num: 10412
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.05e0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

MQ
type: SiteQuality
SIO_000300: 5.659e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

DP
type: SiteQuality
SIO_000300: 1.7383e6

FS
type: SiteQuality
SIO_000300: 1.36e0

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

GenotypeQuality
all individuals: 2023
bin: 5.25e1
variant carriers: 14

GenotypeQuality
all individuals: 966
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1311
bin: 7.75e1
variant carriers: 10

GenotypeQuality
all individuals: 856
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1449
bin: 7.25e1
variant carriers: 13

GenotypeQuality
all individuals: 3170
bin: 7.5e0
variant carriers: 28

GenotypeQuality
all individuals: 7418
bin: 9.75e1
variant carriers: 35

GenotypeQuality
all individuals: 2861
bin: 2.75e1
variant carriers: 30

GenotypeQuality
all individuals: 1672
bin: 6.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1921
bin: 5.75e1
variant carriers: 19

GenotypeQuality
all individuals: 2773
bin: 1.75e1
variant carriers: 28

GenotypeQuality
all individuals: 2334
bin: 4.75e1
variant carriers: 20

GenotypeQuality
all individuals: 2535
bin: 3.75e1
variant carriers: 24

GenotypeQuality
all individuals: 1122
bin: 8.25e1
variant carriers: 6

European (Non-Finnish)
type: Population
allele count: 139
allele frequency: 3.511164999494797e-3
allele num: 39588
num of homozygotes: 0

South Asian
type: Population
allele count: 37
allele frequency: 3.553592009220131e-3
allele num: 10412
num of homozygotes: 0

Latino
type: Population
allele count: 34
allele frequency: 5.052005943536404e-3
allele num: 6730
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 2.767208578346593e-3
allele num: 5782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

East Asian
type: Population
allele count: 34
allele frequency: 7.053941908713693e-3
allele num: 4820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 15
allele frequency: 3.854059609455293e-3
allele num: 3892
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-1

MQ
type: SiteQuality
SIO_000300: 5.659e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

DP
type: SiteQuality
SIO_000300: 1.7383e6

FS
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.57e-1

QD
type: SiteQuality
SIO_000300: 2.05e0

GenotypeQuality
all individuals: 2023
bin: 5.25e1
variant carriers: 58

GenotypeQuality
all individuals: 15571
bin: 2.5e0
variant carriers: 139

GenotypeQuality
all individuals: 1311
bin: 7.75e1
variant carriers: 45

GenotypeQuality
all individuals: 2837
bin: 1.25e1
variant carriers: 133

GenotypeQuality
all individuals: 2908
bin: 2.25e1
variant carriers: 121

GenotypeQuality
all individuals: 2730
bin: 3.25e1
variant carriers: 111

GenotypeQuality
all individuals: 1449
bin: 7.25e1
variant carriers: 44

GenotypeQuality
all individuals: 1921
bin: 5.75e1
variant carriers: 70

GenotypeQuality
all individuals: 2357
bin: 4.25e1
variant carriers: 82

GenotypeQuality
all individuals: 7418
bin: 9.75e1
variant carriers: 133

GenotypeQuality
all individuals: 1817
bin: 6.25e1
variant carriers: 80

GenotypeQuality
all individuals: 856
bin: 9.25e1
variant carriers: 23

GenotypeQuality
all individuals: 1672
bin: 6.75e1
variant carriers: 41

GenotypeQuality
all individuals: 966
bin: 8.75e1
variant carriers: 25

African
type: Population
allele count: 49
allele frequency: 8.474576271186441e-3
allele num: 5782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 18
allele frequency: 4.624871531346351e-3
allele num: 3892
num of homozygotes: 0

Latino
type: Population
allele count: 102
allele frequency: 1.515601783060921e-2
allele num: 6730
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 9.025270758122744e-3
allele num: 554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 645
allele frequency: 1.629281600484996e-2
allele num: 39588
num of homozygotes: 0

East Asian
type: Population
allele count: 64
allele frequency: 1.327800829875519e-2
allele num: 4820
num of homozygotes: 0

South Asian
type: Population
allele count: 240
allele frequency: 2.305032654629274e-2
allele num: 10412
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

DP
type: SiteQuality
SIO_000300: 1.7383e6

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-1

MQ
type: SiteQuality
SIO_000300: 5.659e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

FS
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.57e-1

QD
type: SiteQuality
SIO_000300: 2.05e0

GenotypeQuality
all individuals: 601
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32831
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1706
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.060108131029365e-4
allele num: 18866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2792
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.62e0

FS
type: SiteQuality
SIO_000300: 2.516e0

MQ
type: SiteQuality
SIO_000300: 5.782e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.086e0

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.775e-1

DP
type: SiteQuality
SIO_000300: 2.107753e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.14e0

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.03e-1

GenotypeQuality
all individuals: 9241
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1849
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4991
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15814
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4211
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1827
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2184
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508159140952553e-5
allele num: 66306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.717e0

MQ
type: SiteQuality
SIO_000300: 5.814e1

FS
type: SiteQuality
SIO_000300: 5.229e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

DP
type: SiteQuality
SIO_000300: 2.550209e6

QD
type: SiteQuality
SIO_000300: 1.845e1

GenotypeQuality
all individuals: 1118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4929
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1150
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2213
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 665
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14855
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2092
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1380
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9703
bin: 9.75e1
variant carriers: 271

GenotypeQuality
all individuals: 2802
bin: 9.25e1
variant carriers: 3

Latino
type: Population
allele count: 2
allele frequency: 1.737015806843842e-4
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.212389380530973e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.659275349202039e-4
allele num: 66294
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.686168151879117e-5
allele num: 10324
num of homozygotes: 0

East Asian
type: Population
allele count: 248
allele frequency: 2.924528301886792e-2
allele num: 8480
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 9.721715882853323e-4
allele num: 16458
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2023e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e0

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.82e-1

DP
type: SiteQuality
SIO_000300: 2.563272e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.78e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.25e-1

QD
type: SiteQuality
SIO_000300: 1.34e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.232e0

MQ
type: SiteQuality
SIO_000300: 5.796e1

GenotypeQuality
all individuals: 605
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3903
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 925
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 7963
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2773
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17637
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9276
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.146281499692685e-5
allele num: 16270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.049245311785333e-5
allele num: 65590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.18595825426945e-4
allele num: 8432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.589319771137953e-4
allele num: 6292
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.732e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.75e-1

FS
type: SiteQuality
SIO_000300: 3.1199e1

VQSLOD
type: SiteQuality
SIO_000300: -3.378e0

DP
type: SiteQuality
SIO_000300: 2.565174e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

QD
type: SiteQuality
SIO_000300: 1.2e-1

GenotypeQuality
all individuals: 23904
bin: 2.5e0
variant carriers: 94

GenotypeQuality
all individuals: 1673
bin: 5.25e1
variant carriers: 53

GenotypeQuality
all individuals: 1801
bin: 4.25e1
variant carriers: 67

GenotypeQuality
all individuals: 813
bin: 8.75e1
variant carriers: 31

GenotypeQuality
all individuals: 1963
bin: 1.75e1
variant carriers: 109

GenotypeQuality
all individuals: 1367
bin: 7.25e1
variant carriers: 32

GenotypeQuality
all individuals: 2197
bin: 3.25e1
variant carriers: 95

GenotypeQuality
all individuals: 1977
bin: 7.5e0
variant carriers: 117

GenotypeQuality
all individuals: 3557
bin: 6.25e1
variant carriers: 51

GenotypeQuality
all individuals: 1706
bin: 4.75e1
variant carriers: 55

GenotypeQuality
all individuals: 1089
bin: 8.25e1
variant carriers: 22

GenotypeQuality
all individuals: 823
bin: 9.25e1
variant carriers: 18

GenotypeQuality
all individuals: 4078
bin: 9.75e1
variant carriers: 126

GenotypeQuality
all individuals: 1937
bin: 6.75e1
variant carriers: 50

European (Non-Finnish)
type: Population
allele count: 586
allele frequency: 1.712248714352501e-2
allele num: 34224
num of homozygotes: 0

African
type: Population
allele count: 64
allele frequency: 1.114206128133705e-2
allele num: 5744
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 1.3215859030837e-2
allele num: 454
num of homozygotes: 0

South Asian
type: Population
allele count: 137
allele frequency: 1.911805749372035e-2
allele num: 7166
num of homozygotes: 0

Latino
type: Population
allele count: 56
allele frequency: 9.890498057223597e-3
allele num: 5662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 27
allele frequency: 8.458646616541353e-3
allele num: 3192
num of homozygotes: 0

East Asian
type: Population
allele count: 36
allele frequency: 8.082622361921869e-3
allele num: 4454
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.039e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.202e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.75e-1

QD
type: SiteQuality
SIO_000300: 5.7e-1

MQ
type: SiteQuality
SIO_000300: 5.734e1

FS
type: SiteQuality
SIO_000300: 2.2856e1

DP
type: SiteQuality
SIO_000300: 2.698263e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.082e0

VQSLOD
type: SiteQuality
SIO_000300: 3.02e-1

GenotypeQuality
all individuals: 387
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26152
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.072e0

FS
type: SiteQuality
SIO_000300: 3.789e0

VQSLOD
type: SiteQuality
SIO_000300: -2.253e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

QD
type: SiteQuality
SIO_000300: 6.19e0

MQ
type: SiteQuality
SIO_000300: 5.87e1

DP
type: SiteQuality
SIO_000300: 2.712777e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 8814
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 3631
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2955
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 4403
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variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 3875
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variant carriers: 0

GenotypeQuality
all individuals: 5590
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variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.789e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

DP
type: SiteQuality
SIO_000300: 2.720071e6

VQSLOD
type: SiteQuality
SIO_000300: -2.105e0

MQ
type: SiteQuality
SIO_000300: 5.819e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

QD
type: SiteQuality
SIO_000300: 2.482e1

GenotypeQuality
all individuals: 8904
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4416
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 3872
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 152
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GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 3639
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variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4688
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.05e-1

FS
type: SiteQuality
SIO_000300: 1.536e0

QD
type: SiteQuality
SIO_000300: 7.27e0

VQSLOD
type: SiteQuality
SIO_000300: -1.217e0

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 2.721298e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 3634
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 3879
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GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 5653
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 9052
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.453223460979156e-4
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.605e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.77e0

DP
type: SiteQuality
SIO_000300: 2.723701e6

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

MQRankSum
type: SiteQuality
SIO_000300: -1.916e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

MQ
type: SiteQuality
SIO_000300: 5.479e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 5652
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 4715
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GenotypeQuality
all individuals: 3637
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 26218
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GenotypeQuality
all individuals: 3879
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.282e0

QD
type: SiteQuality
SIO_000300: 1.116e1

MQ
type: SiteQuality
SIO_000300: 5.843e1

FS
type: SiteQuality
SIO_000300: 4.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.053e0

VQSLOD
type: SiteQuality
SIO_000300: -2.157e0

DP
type: SiteQuality
SIO_000300: 2.724555e6

GenotypeQuality
all individuals: 26219
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

MQ
type: SiteQuality
SIO_000300: 5.718e1

FS
type: SiteQuality
SIO_000300: 1.1247e1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.887e0

QD
type: SiteQuality
SIO_000300: 1.368e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.724621e6

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 4716
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 5657
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9125
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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South Asian
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BaseQRankSum
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ClippingRankSum
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DP
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MQRankSum
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QD
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InbreedingCoeff
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FS
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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DP
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BaseQRankSum
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MQ
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FS
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ClippingRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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MQRankSum
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VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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MQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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European (Finnish)
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African
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Other
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East Asian
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VQSLOD
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DP
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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MQ
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ClippingRankSum
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DP
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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MQ
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QD
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ReadPosRankSum
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VQSLOD
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FS
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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BaseQRankSum
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QD
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InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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FS
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ReadPosRankSum
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DP
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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InbreedingCoeff
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QD
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MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: -1.46e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.55e0

FS
type: SiteQuality
SIO_000300: 4.623e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.72551e6

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5668
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3643
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9122
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3878
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26225
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2959
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.923446816695518e-4
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.07e0

QD
type: SiteQuality
SIO_000300: 9.24e0

DP
type: SiteQuality
SIO_000300: 2.725471e6

MQ
type: SiteQuality
SIO_000300: 5.79e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.57e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.05e-1

FS
type: SiteQuality
SIO_000300: 7.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.661e0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26223
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3643
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9125
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3878
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2961
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4709
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5669
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.726e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 1.05e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.891e0

VQSLOD
type: SiteQuality
SIO_000300: -1.436e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.14e-1

DP
type: SiteQuality
SIO_000300: 2.725472e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.99e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.8e1

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9114
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3643
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2961
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4425
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26224
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3876
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.855e0

MQ
type: SiteQuality
SIO_000300: 5.711e1

VQSLOD
type: SiteQuality
SIO_000300: -1.327e0

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.271e0

DP
type: SiteQuality
SIO_000300: 2.725363e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.362e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

QD
type: SiteQuality
SIO_000300: 9.18e0