4-159494013-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159494013
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159494013
    reference: chr 4
allele count: 1
allele frequency: 8.286926544683108e-6
allele num: 120672
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-57+26T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.187+26T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.187+26T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171509
  ensembl transcript: ENST00000484785
  gene symbol: RXFP1
  hgvsc: ENST00000484785.1:n.339T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.187+26T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.187+26T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.187+26T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.187+26T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-57+26T>C
  variant of: http://identifiers.org/hgnc/19718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6306
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31093
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

4-159494015-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159494015
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159494015
    reference: chr 4
allele count: 1
allele frequency: 8.287613333112331e-6
allele num: 120662
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-57+28A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.187+28A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.187+28A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.187+28A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171509
  ensembl transcript: ENST00000484785
  gene symbol: RXFP1
  hgvsc: ENST00000484785.1:n.341A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.187+28A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-57+28A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.187+28A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.187+28A>G
  variant of: http://identifiers.org/hgnc/19718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6276
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7568
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3948
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

4-159494018-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159494018
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159494018
    reference: chr 4
allele count: 6
allele frequency: 4.972980141232636e-5
allele num: 120652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.187+31G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-57+31G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.187+31G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.187+31G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171509
  ensembl transcript: ENST00000484785
  gene symbol: RXFP1
  hgvsc: ENST00000484785.1:n.344G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.187+31G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.187+31G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.187+31G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-57+31G>A
  variant of: http://identifiers.org/hgnc/19718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7805
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8260
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7203
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

4-159494029-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159494029
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159494029
    reference: chr 4
allele count: 1
allele frequency: 8.289124668435012e-6
allele num: 120640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.187+42A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.187+42A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.187+42A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.187+42A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.187+42A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-57+42A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-57+42A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171509
  ensembl transcript: ENST00000484785
  gene symbol: RXFP1
  hgvsc: ENST00000484785.1:n.355A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.187+42A>G
  variant of: http://identifiers.org/hgnc/19718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/4-159494031-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159494031
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159494031
    reference: chr 4
allele count: 1
allele frequency: 8.28953694646617e-6
allele num: 120634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.187+44A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.187+44A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.187+44A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171509
  ensembl transcript: ENST00000484785
  gene symbol: RXFP1
  hgvsc: ENST00000484785.1:n.357A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.187+44A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.187+44A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.187+44A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-57+44A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-57+44A>C
  variant of: http://identifiers.org/hgnc/19718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3962
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3761
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

4-159494032-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159494032
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159494032
    reference: chr 4
allele count: 1
allele frequency: 8.289811821271656e-6
allele num: 120630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-57+45G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-57+45G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.187+45G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171509
  ensembl transcript: ENST00000484785
  gene symbol: RXFP1
  hgvsc: ENST00000484785.1:n.358G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.187+45G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.187+45G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.187+45G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.187+45G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.187+45G>A
  variant of: http://identifiers.org/hgnc/19718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7193
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3861
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

4-159494033-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159494033
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159494033
    reference: chr 4
allele count: 1
allele frequency: 8.291186468783682e-6
allele num: 120610
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.187+46G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-57+46G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171509
  ensembl transcript: ENST00000484785
  gene symbol: RXFP1
  hgvsc: ENST00000484785.1:n.359G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.187+46G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-57+46G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.187+46G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.187+46G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.187+46G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.187+46G>A
  variant of: http://identifiers.org/hgnc/19718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

4-159494033-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159494033
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159494033
    reference: chr 4
allele count: 1
allele frequency: 8.291186468783682e-6
allele num: 120610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.187+46G>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.187+46G>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.187+46G>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-57+46G>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171509
  ensembl transcript: ENST00000484785
  gene symbol: RXFP1
  hgvsc: ENST00000484785.1:n.359G>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-57+46G>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.187+46G>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.187+46G>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.187+46G>C
  variant of: http://identifiers.org/hgnc/19718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3957
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31066
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5767
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

4-159494035-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159494035
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159494035
    reference: chr 4
allele count: 7
allele frequency: 5.80556338845854e-5
allele num: 120574
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.187+48C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-57+48C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.187+48C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.187+48C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.187+48C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171509
  ensembl transcript: ENST00000484785
  gene symbol: RXFP1
  hgvsc: ENST00000484785.1:n.361C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.187+48C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-57+48C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.187+48C>G
  variant of: http://identifiers.org/hgnc/19718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7793
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8221
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7189
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3722
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

4-159494036-T-TGAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159494036
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159494039
    reference: chr 4
allele count: 1
allele frequency: 8.292561572269675e-6
allele num: 120590
alternate allele: TGAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-57+51_-57+53dupAAG
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171509
  ensembl transcript: ENST00000484785
  gene symbol: RXFP1
  hgvsc: ENST00000484785.1:n.364_366dupAAG
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.187+51_187+53dupAAG
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.187+51_187+53dupAAG
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.187+51_187+53dupAAG
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.187+51_187+53dupAAG
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.187+51_187+53dupAAG
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-57+51_-57+53dupAAG
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.187+51_187+53dupAAG
  variant of: http://identifiers.org/hgnc/19718
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3955
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5251
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

4-159514509-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514509
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514509
    reference: chr 4
allele count: 1
allele frequency: 1.18206104163219e-5
allele num: 84598
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5969A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.188-44A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-56-44A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.188-44A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.188-44A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.188-44A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.188-44A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-56-44A>G
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15099
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12892
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

4-159514511-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514511
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514511
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 84352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.188-42C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5967C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-56-42C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.188-42C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.188-42C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.188-42C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-56-42C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.188-42C>G
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15115
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6755
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13330
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2682
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5202
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-159514515-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514515
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514515
    reference: chr 4
allele count: 2
allele frequency: 2.349016936412112e-5
allele num: 85142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-56-38G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.188-38G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.188-38G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.188-38G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.188-38G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.188-38G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-56-38G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5963G>A
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9437
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7058
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9218
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

4-159514531-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514531
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514530
    reference: chr 4
allele count: 1
allele frequency: 1.088921314545811e-5
allele num: 91834
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.188-21delG
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.188-21delG
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-56-21delG
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5946delG
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.188-21delG
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.188-21delG
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-56-21delG
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.188-21delG
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24105
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4736
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: TG
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

4-159514540-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514540
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514540
    reference: chr 4
allele count: 1
allele frequency: 9.978645698205839e-6
allele num: 100214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-56-13A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.188-13A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5938A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.188-13A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-56-13A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.188-13A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.188-13A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.188-13A>G
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

4-159514544-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514544
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514544
    reference: chr 4
allele count: 3
allele frequency: 2.904106406458733e-5
allele num: 103302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.188-9T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.188-9T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-56-9T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5934T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.188-9T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-56-9T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.188-9T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.188-9T>G
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34849
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8732
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

4-159514548-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514548
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514548
    reference: chr 4
allele count: 1
allele frequency: 9.394964299135663e-6
allele num: 106440
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.188-5T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.188-5T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.188-5T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-56-5T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.188-5T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.188-5T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5930T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-56-5T>C
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7179
  bin: 2.25e1
  variant carriers: 0
hgvs: c.188-5T>C
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

4-159514549-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514549
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514549
    reference: chr 4
allele count: 1
allele frequency: 9.330621232761677e-6
allele num: 107174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5929T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.188-4T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.188-4T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-56-4T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-56-4T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.188-4T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.188-4T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.188-4T>G
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
hgvs: c.188-4T>G
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

4-159514562-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514562
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514562
    reference: chr 4
allele count: 2
allele frequency: 1.744530895642162e-5
allele num: 114644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.197A>G
  hgvsp: ENSP00000345889.5:p.Asn66Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.197A>G
  hgvsp: ENSP00000432036.1:p.Asn66Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.197A>G
  hgvsp: ENSP00000303248.5:p.Asn66Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-47A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.197A>G
  hgvsp: ENSP00000405841.1:p.Asn66Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5916A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.197A>G
  hgvsp: ENSP00000434475.1:p.Asn66Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-47A>G
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn66Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/4-159514585-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514585
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514585
    reference: chr 4
allele count: 1
allele frequency: 8.450656616019065e-6
allele num: 118334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-24A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.220A>C
  hgvsp: ENSP00000345889.5:p.Lys74Gln
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-24A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.220A>C
  hgvsp: ENSP00000432036.1:p.Lys74Gln
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.220A>C
  hgvsp: ENSP00000303248.5:p.Lys74Gln
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.220A>C
  hgvsp: ENSP00000434475.1:p.Lys74Gln
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.220A>C
  hgvsp: ENSP00000405841.1:p.Lys74Gln
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5893A>C
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys74Gln
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

4-159514599-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514599
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514599
    reference: chr 4
allele count: 5
allele frequency: 4.203093476798924e-5
allele num: 118960
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.234T>G
  hgvsp: ENSP00000345889.5:p.Ser78Arg
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.234T>G
  hgvsp: ENSP00000303248.5:p.Ser78Arg
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5879T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.234T>G
  hgvsp: ENSP00000432036.1:p.Ser78Arg
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-10T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.234T>G
  hgvsp: ENSP00000405841.1:p.Ser78Arg
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-10T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.234T>G
  hgvsp: ENSP00000434475.1:p.Ser78Arg
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser78Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/4-159514604-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514604
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514604
    reference: chr 4
allele count: 1
allele frequency: 8.400961069946402e-6
allele num: 119034
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.239A>C
  hgvsp: ENSP00000303248.5:p.Tyr80Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.239A>C
  hgvsp: ENSP00000432036.1:p.Tyr80Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.239A>C
  hgvsp: ENSP00000434475.1:p.Tyr80Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.239A>C
  hgvsp: ENSP00000345889.5:p.Tyr80Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.239A>C
  hgvsp: ENSP00000405841.1:p.Tyr80Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-5A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-5A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5874A>C
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49541
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr80Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-159514604-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514604
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514604
    reference: chr 4
allele count: 1
allele frequency: 8.400961069946402e-6
allele num: 119034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5874A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.-5A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.239A>G
  hgvsp: ENSP00000303248.5:p.Tyr80Cys
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.239A>G
  hgvsp: ENSP00000432036.1:p.Tyr80Cys
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.239A>G
  hgvsp: ENSP00000405841.1:p.Tyr80Cys
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.-5A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.239A>G
  hgvsp: ENSP00000345889.5:p.Tyr80Cys
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.239A>G
  hgvsp: ENSP00000434475.1:p.Tyr80Cys
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr80Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

4-159514617-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514617
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514617
    reference: chr 4
allele count: 1
allele frequency: 8.406610958858046e-6
allele num: 118954
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.9C>G
  hgvsp: ENST00000460056.2:c.9C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.252C>G
  hgvsp: ENST00000343542.5:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.252C>G
  hgvsp: ENST00000307765.5:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5861C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.252C>G
  hgvsp: ENST00000471616.1:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.9C>G
  hgvsp: ENST00000448688.2:c.9C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.252C>G
  hgvsp: ENST00000423548.1:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.252C>G
  hgvsp: ENST00000342048.5:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser84Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

4-159514623-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514623
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514623
    reference: chr 4
allele count: 2
allele frequency: 1.683671751355356e-5
allele num: 118788
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5855T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.258T>G
  hgvsp: ENSP00000345889.5:p.Tyr86Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.258T>G
  hgvsp: ENSP00000303248.5:p.Tyr86Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.258T>G
  hgvsp: ENSP00000434475.1:p.Tyr86Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.258T>G
  hgvsp: ENSP00000432036.1:p.Tyr86Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.15T>G
  hgvsp: ENSP00000414885.2:p.Tyr5Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.258T>G
  hgvsp: ENSP00000405841.1:p.Tyr86Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.15T>G
  hgvsp: ENSP00000423306.1:p.Tyr5Ter
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42617
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr86Ter
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-159514624-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514624
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514624
    reference: chr 4
allele count: 1
allele frequency: 8.426019548365353e-6
allele num: 118680
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.259C>G
  hgvsp: ENSP00000434475.1:p.Pro87Ala
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.16C>G
  hgvsp: ENSP00000414885.2:p.Pro6Ala
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5854C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.259C>G
  hgvsp: ENSP00000303248.5:p.Pro87Ala
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.259C>G
  hgvsp: ENSP00000405841.1:p.Pro87Ala
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.259C>G
  hgvsp: ENSP00000345889.5:p.Pro87Ala
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.259C>G
  hgvsp: ENSP00000432036.1:p.Pro87Ala
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.16C>G
  hgvsp: ENSP00000423306.1:p.Pro6Ala
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9534
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro87Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

4-159514629-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514629
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514629
    reference: chr 4
allele count: 1
allele frequency: 8.439673215853081e-6
allele num: 118488
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.264T>G
  hgvsp: ENSP00000303248.5:p.Phe88Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.21T>G
  hgvsp: ENSP00000423306.1:p.Phe7Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.264T>G
  hgvsp: ENSP00000345889.5:p.Phe88Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.264T>G
  hgvsp: ENSP00000405841.1:p.Phe88Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.264T>G
  hgvsp: ENSP00000434475.1:p.Phe88Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5849T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.264T>G
  hgvsp: ENSP00000432036.1:p.Phe88Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.21T>G
  hgvsp: ENSP00000414885.2:p.Phe7Leu
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Phe88Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

4-159514642-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514642
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514642
    reference: chr 4
allele count: 1
allele frequency: 8.511942254983741e-6
allele num: 117482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.34C>T
  hgvsp: ENSP00000414885.2:p.Pro12Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.277C>T
  hgvsp: ENSP00000405841.1:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.277C>T
  hgvsp: ENSP00000345889.5:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5836C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.277C>T
  hgvsp: ENSP00000432036.1:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.277C>T
  hgvsp: ENSP00000303248.5:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.34C>T
  hgvsp: ENSP00000423306.1:p.Pro12Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.277C>T
  hgvsp: ENSP00000434475.1:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2767
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro93Ser
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

4-159514647-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514647
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514647
    reference: chr 4
allele count: 1
allele frequency: 8.566778034781118e-6
allele num: 116730
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.282A>G
  hgvsp: ENST00000423548.1:c.282A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.39A>G
  hgvsp: ENST00000448688.2:c.39A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.282A>G
  hgvsp: ENST00000343542.5:c.282A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.282A>G
  hgvsp: ENST00000342048.5:c.282A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.282A>G
  hgvsp: ENST00000471616.1:c.282A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.39A>G
  hgvsp: ENST00000460056.2:c.39A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.282A>G
  hgvsp: ENST00000307765.5:c.282A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5831A>G
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2754
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3723
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu94Glu
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP

4-159514654-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514654
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514654
    reference: chr 4
allele count: 2
allele frequency: 1.736834792274559e-5
allele num: 115152
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.286+3A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.286+3A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.286+3A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.286+3A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5824A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.286+3A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.43+3A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.43+3A>G
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35893
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
hgvs: c.286+3A>G
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-159514659-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514659
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514659
    reference: chr 4
allele count: 1
allele frequency: 8.753501400560223e-6
allele num: 114240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.286+8A>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.286+8A>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.43+8A>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.286+8A>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.286+8A>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.286+8A>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5819A>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.43+8A>T
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7453
  bin: 2.25e1
  variant carriers: 0
hgvs: c.286+8A>T
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum

4-159514667-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514667
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514667
    reference: chr 4
allele count: 2
allele frequency: 1.777177486715598e-5
allele num: 112538
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.43+16A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5811A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.286+16A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.286+16A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.286+16A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.286+16A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.286+16A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.43+16A>G
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

4-159514670-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514670
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514670
    reference: chr 4
allele count: 1
allele frequency: 8.956881572111853e-6
allele num: 111646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.286+19T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.286+19T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5808T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.286+19T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.286+19T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.286+19T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.43+19T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.43+19T>C
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3349
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2918
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12077
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29774
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/4-159514699-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514699
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514699
    reference: chr 4
allele count: 3
allele frequency: 2.940657531023937e-5
allele num: 102018
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5779C>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.286+48C>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.286+48C>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.286+48C>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.43+48C>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.286+48C>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.43+48C>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.286+48C>A
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16920
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5462
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3663
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6859
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

4-159514699-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159514699
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159514699
    reference: chr 4
allele count: 3
allele frequency: 2.940657531023937e-5
allele num: 102018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.286+48C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.286+48C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.286+48C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.286+48C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-5779C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.286+48C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.43+48C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.43+48C>T
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10923
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14941
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3663
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2707
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3389
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6530
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12740
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

4-159520354-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520354
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520354
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 25842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-124C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-124C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-124C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-124C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-124C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-124C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-124C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-124C>T
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21366
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17309
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6096
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6927
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

4-159520355-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520355
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520355
    reference: chr 4
allele count: 1
allele frequency: 3.838476892369108e-5
allele num: 26052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-123G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-123G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-123G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-123G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-123G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-123G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-123G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-123G>A
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23861
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21689
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17501
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5410
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6641
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

4-159520358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520358
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520358
    reference: chr 4
allele count: 1
allele frequency: 3.80430647492962e-5
allele num: 26286
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-120G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-120G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-120G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-120G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-120G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-120G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-120G>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-120G>A
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23012
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4377
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5996
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17577
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

4-159520362-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520362
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520362
    reference: chr 4
allele count: 1
allele frequency: 3.706723997331159e-5
allele num: 26978
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-116A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-116A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-116A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-116A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-116A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-116A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-116A>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-116A>G
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4209
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4870
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18959
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17131
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

4-159520368-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520368
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520368
    reference: chr 4
allele count: 1
allele frequency: 3.581918475535497e-5
allele num: 27918
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-110T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-110T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-110T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-110T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-110T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-110T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-110T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-110T>C
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5175
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

4-159520383-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520383
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520383
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 32516
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-95T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-95T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-95T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-95T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-95T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-95T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-95T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-95T>C
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33544
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum

4-159520386-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520386
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520386
    reference: chr 4
allele count: 1
allele frequency: 2.901915264074289e-5
allele num: 34460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-92T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-92T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-92T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-92T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-92T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-92T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-92T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-92T>A
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34176
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

4-159520404-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520404
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520404
    reference: chr 4
allele count: 1
allele frequency: 1.804077214504781e-5
allele num: 55430
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-74T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-74T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-74T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-74T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-74T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-74T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-74T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-74T>A
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16092
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29220
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16510
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

4-159520406-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520406
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520405
    reference: chr 4
allele count: 1
allele frequency: 1.661681621801263e-5
allele num: 60180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-71delC
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-71delC
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-71delC
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-71delC
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-71delC
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-71delC
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-71delC
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-71delC
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: TC
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ

4-159520409-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520409
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520409
    reference: chr 4
allele count: 1
allele frequency: 1.511761504505049e-5
allele num: 66148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-69T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-69T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-69T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-69T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-69T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-69T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-69T>A
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-69T>A
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21825
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

4-159520422-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520422
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520422
    reference: chr 4
allele count: 2
allele frequency: 2.058036633052068e-5
allele num: 97180
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-56C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-56C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-56C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-56C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-56C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-56C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-56C>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-56C>G
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11629
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

4-159520425-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520425
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520425
    reference: chr 4
allele count: 3
allele frequency: 2.908949869097256e-5
allele num: 103130
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-53C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-53C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-53C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-53C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-53C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-53C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-53C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-53C>T
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8733
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/4-159520451-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520451
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520451
    reference: chr 4
allele count: 3
allele frequency: 2.520881300102516e-5
allele num: 119006
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-27A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-27A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-27A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-27A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-27A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-27A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-27A>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-27A>C
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

4-159520455-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520455
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520455
    reference: chr 4
allele count: 1
allele frequency: 8.368761088608442e-6
allele num: 119492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-23C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-23C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-23C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-23C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-23C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-23C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-23C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-23C>T
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

4-159520463-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520463
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520463
    reference: chr 4
allele count: 1
allele frequency: 8.334861391255063e-6
allele num: 119978
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-15T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-15T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-15T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-15T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-15T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-15T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-15T>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-15T>C
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45832
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53524
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum

4-159520467-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520467
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520467
    reference: chr 4
allele count: 7
allele frequency: 5.827311777829576e-5
allele num: 120124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-11C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-11C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-11C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-11C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-11C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-11C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-11C>T
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-11C>T
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

4-159520469-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520469
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520469
    reference: chr 4
allele count: 1
allele frequency: 8.320021299254527e-6
allele num: 120192
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-9T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-9T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-9T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-9T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-9T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-9T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-9T>G
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-9T>G
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

4-159520471-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520471
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520471
    reference: chr 4
allele count: 1
allele frequency: 8.315178526882972e-6
allele num: 120262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44-7G>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287-7G>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287-7G>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287-7G>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44-7G>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188-7G>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287-7G>C
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287-7G>C
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.25e1
  variant carriers: 0
hgvs: c.287-7G>C
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

4-159520478-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520478
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520478
    reference: chr 4
allele count: 1
allele frequency: 8.307579835842223e-6
allele num: 120372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.188T>G
  hgvsp: ENSP00000420712.1:p.Val63Gly
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.287T>G
  hgvsp: ENSP00000303248.5:p.Leu96Trp
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.44T>G
  hgvsp: ENSP00000423306.1:p.Leu15Trp
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.287T>G
  hgvsp: ENSP00000405841.1:p.Leu96Trp
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.287T>G
  hgvsp: ENSP00000345889.5:p.Leu96Trp
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.44T>G
  hgvsp: ENSP00000414885.2:p.Leu15Trp
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.287T>G
  hgvsp: ENSP00000434475.1:p.Leu96Trp
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.287T>G
  hgvsp: ENSP00000432036.1:p.Leu96Trp
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu96Trp
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

4-159520480-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520480
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520480
    reference: chr 4
allele count: 1
allele frequency: 8.306199747491528e-6
allele num: 120392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.289G>A
  hgvsp: ENSP00000432036.1:p.Val97Ile
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.46G>A
  hgvsp: ENSP00000423306.1:p.Val16Ile
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.289G>A
  hgvsp: ENSP00000405841.1:p.Val97Ile
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.46G>A
  hgvsp: ENSP00000414885.2:p.Val16Ile
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.289G>A
  hgvsp: ENSP00000303248.5:p.Val97Ile
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.190G>A
  hgvsp: ENSP00000420712.1:p.Val64Ile
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.289G>A
  hgvsp: ENSP00000434475.1:p.Val97Ile
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.289G>A
  hgvsp: ENSP00000345889.5:p.Val97Ile
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val97Ile
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

4-159520480-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520480
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520480
    reference: chr 4
allele count: 1
allele frequency: 8.306199747491528e-6
allele num: 120392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.289G>C
  hgvsp: ENSP00000405841.1:p.Val97Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.289G>C
  hgvsp: ENSP00000432036.1:p.Val97Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.46G>C
  hgvsp: ENSP00000423306.1:p.Val16Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.289G>C
  hgvsp: ENSP00000303248.5:p.Val97Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.289G>C
  hgvsp: ENSP00000434475.1:p.Val97Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.289G>C
  hgvsp: ENSP00000345889.5:p.Val97Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.190G>C
  hgvsp: ENSP00000420712.1:p.Val64Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.46G>C
  hgvsp: ENSP00000414885.2:p.Val16Leu
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45835
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val97Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/4-159520482-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520482
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520482
    reference: chr 4
allele count: 1
allele frequency: 8.305509875251242e-6
allele num: 120402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.291C>A
  hgvsp: ENST00000342048.5:c.291C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.48C>A
  hgvsp: ENST00000448688.2:c.48C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.291C>A
  hgvsp: ENST00000307765.5:c.291C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.291C>A
  hgvsp: ENST00000343542.5:c.291C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.291C>A
  hgvsp: ENST00000471616.1:c.291C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.291C>A
  hgvsp: ENST00000423548.1:c.291C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.48C>A
  hgvsp: ENST00000460056.2:c.48C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.192C>A
  hgvsp: ENST00000470033.1:c.192C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2913
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val97Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

4-159520482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520482
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520482
    reference: chr 4
allele count: 4
allele frequency: 3.322203950100497e-5
allele num: 120402
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.291C>T
  hgvsp: ENST00000307765.5:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.291C>T
  hgvsp: ENST00000471616.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.192C>T
  hgvsp: ENST00000470033.1:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.291C>T
  hgvsp: ENST00000342048.5:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.48C>T
  hgvsp: ENST00000460056.2:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.291C>T
  hgvsp: ENST00000343542.5:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.291C>T
  hgvsp: ENST00000423548.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.48C>T
  hgvsp: ENST00000448688.2:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10710
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val97Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

4-159520483-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520483
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520483
    reference: chr 4
allele count: 7
allele frequency: 5.813084422594629e-5
allele num: 120418
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.292G>A
  hgvsp: ENSP00000303248.5:p.Gly98Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.193G>A
  hgvsp: ENSP00000420712.1:p.Gly65Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.292G>A
  hgvsp: ENSP00000434475.1:p.Gly98Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.292G>A
  hgvsp: ENSP00000405841.1:p.Gly98Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.292G>A
  hgvsp: ENSP00000432036.1:p.Gly98Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.292G>A
  hgvsp: ENSP00000345889.5:p.Gly98Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.49G>A
  hgvsp: ENSP00000414885.2:p.Gly17Ser
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.49G>A
  hgvsp: ENSP00000423306.1:p.Gly17Ser
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly98Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/4-159520520-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520520
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520520
    reference: chr 4
allele count: 1
allele frequency: 8.297928836962294e-6
allele num: 120512
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.230A>C
  hgvsp: ENSP00000420712.1:p.Glu77Ala
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.329A>C
  hgvsp: ENSP00000434475.1:p.Glu110Ala
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.86A>C
  hgvsp: ENSP00000414885.2:p.Glu29Ala
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.86A>C
  hgvsp: ENSP00000423306.1:p.Glu29Ala
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.329A>C
  hgvsp: ENSP00000405841.1:p.Glu110Ala
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.329A>C
  hgvsp: ENSP00000432036.1:p.Glu110Ala
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.329A>C
  hgvsp: ENSP00000303248.5:p.Glu110Ala
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.329A>C
  hgvsp: ENSP00000345889.5:p.Glu110Ala
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10858
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu110Ala
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

4-159520522-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520522
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520522
    reference: chr 4
allele count: 1
allele frequency: 8.297928836962294e-6
allele num: 120512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.88C>T
  hgvsp: ENSP00000423306.1:p.Leu30Phe
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.331C>T
  hgvsp: ENSP00000405841.1:p.Leu111Phe
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.88C>T
  hgvsp: ENSP00000414885.2:p.Leu30Phe
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.232C>T
  hgvsp: ENSP00000420712.1:p.Leu78Phe
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.331C>T
  hgvsp: ENSP00000434475.1:p.Leu111Phe
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.331C>T
  hgvsp: ENSP00000432036.1:p.Leu111Phe
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.331C>T
  hgvsp: ENSP00000303248.5:p.Leu111Phe
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.331C>T
  hgvsp: ENSP00000345889.5:p.Leu111Phe
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu111Phe
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum

4-159520531-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520531
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520531
    reference: chr 4
allele count: 1
allele frequency: 8.300408380092301e-6
allele num: 120476
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.340G>A
  hgvsp: ENSP00000303248.5:p.Asp114Asn
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.340G>A
  hgvsp: ENSP00000345889.5:p.Asp114Asn
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.97G>A
  hgvsp: ENSP00000414885.2:p.Asp33Asn
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.97G>A
  hgvsp: ENSP00000423306.1:p.Asp33Asn
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.241G>A
  hgvsp: ENSP00000420712.1:p.Asp81Asn
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.340G>A
  hgvsp: ENSP00000434475.1:p.Asp114Asn
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.340G>A
  hgvsp: ENSP00000432036.1:p.Asp114Asn
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.340G>A
  hgvsp: ENSP00000405841.1:p.Asp114Asn
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp114Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

4-159520534-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520534
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520534
    reference: chr 4
allele count: 2
allele frequency: 1.660384877214538e-5
allele num: 120454
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.343G>A
  hgvsp: ENSP00000432036.1:p.Glu115Lys
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.244G>A
  hgvsp: ENSP00000420712.1:p.Glu82Lys
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.343G>A
  hgvsp: ENSP00000303248.5:p.Glu115Lys
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.343G>A
  hgvsp: ENSP00000434475.1:p.Glu115Lys
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.343G>A
  hgvsp: ENSP00000405841.1:p.Glu115Lys
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.343G>A
  hgvsp: ENSP00000345889.5:p.Glu115Lys
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.100G>A
  hgvsp: ENSP00000414885.2:p.Glu34Lys
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.100G>A
  hgvsp: ENSP00000423306.1:p.Glu34Lys
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu115Lys
num of homozygotes: 1
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

4-159520534-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520534
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520534
    reference: chr 4
allele count: 1
allele frequency: 8.301924386072691e-6
allele num: 120454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.343G>T
  hgvsp: ENSP00000345889.5:p.Glu115Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.244G>T
  hgvsp: ENSP00000420712.1:p.Glu82Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.343G>T
  hgvsp: ENSP00000303248.5:p.Glu115Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.343G>T
  hgvsp: ENSP00000405841.1:p.Glu115Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.343G>T
  hgvsp: ENSP00000434475.1:p.Glu115Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.100G>T
  hgvsp: ENSP00000423306.1:p.Glu34Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.100G>T
  hgvsp: ENSP00000414885.2:p.Glu34Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.343G>T
  hgvsp: ENSP00000432036.1:p.Glu115Ter
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu115Ter
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD

4-159520535-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520535
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520535
    reference: chr 4
allele count: 2
allele frequency: 1.660412446451699e-5
allele num: 120452
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.344A>G
  hgvsp: ENSP00000432036.1:p.Glu115Gly
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.245A>G
  hgvsp: ENSP00000420712.1:p.Glu82Gly
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.101A>G
  hgvsp: ENSP00000423306.1:p.Glu34Gly
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.344A>G
  hgvsp: ENSP00000434475.1:p.Glu115Gly
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.344A>G
  hgvsp: ENSP00000405841.1:p.Glu115Gly
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.344A>G
  hgvsp: ENSP00000345889.5:p.Glu115Gly
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.344A>G
  hgvsp: ENSP00000303248.5:p.Glu115Gly
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.101A>G
  hgvsp: ENSP00000414885.2:p.Glu34Gly
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10879
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53976
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu115Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

4-159520546-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520546
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520546
    reference: chr 4
allele count: 2
allele frequency: 1.662289304830613e-5
allele num: 120316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.256C>T
  hgvsp: ENSP00000420712.1:p.Arg86Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.112C>T
  hgvsp: ENSP00000414885.2:p.Arg38Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.355C>T
  hgvsp: ENSP00000345889.5:p.Arg119Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.355C>T
  hgvsp: ENSP00000434475.1:p.Arg119Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.355C>T
  hgvsp: ENSP00000405841.1:p.Arg119Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.355C>T
  hgvsp: ENSP00000432036.1:p.Arg119Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.355C>T
  hgvsp: ENSP00000303248.5:p.Arg119Ter
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.112C>T
  hgvsp: ENSP00000423306.1:p.Arg38Ter
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10881
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2904
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg119Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

4-159520547-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520547
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520547
    reference: chr 4
allele count: 9
allele frequency: 7.480053191489362e-5
allele num: 120320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.356G>A
  hgvsp: ENSP00000345889.5:p.Arg119Gln
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.356G>A
  hgvsp: ENSP00000432036.1:p.Arg119Gln
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.356G>A
  hgvsp: ENSP00000405841.1:p.Arg119Gln
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.113G>A
  hgvsp: ENSP00000414885.2:p.Arg38Gln
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.356G>A
  hgvsp: ENSP00000303248.5:p.Arg119Gln
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.257G>A
  hgvsp: ENSP00000420712.1:p.Arg86Gln
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.113G>A
  hgvsp: ENSP00000423306.1:p.Arg38Gln
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.356G>A
  hgvsp: ENSP00000434475.1:p.Arg119Gln
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg119Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

4-159520557-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520557
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520557
    reference: chr 4
allele count: 1
allele frequency: 8.327504080476999e-6
allele num: 120084
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.366A>G
  hgvsp: ENST00000471616.1:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.366A>G
  hgvsp: ENST00000342048.5:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.267A>G
  hgvsp: ENST00000470033.1:c.267A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.123A>G
  hgvsp: ENST00000448688.2:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.366A>G
  hgvsp: ENST00000307765.5:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.366A>G
  hgvsp: ENST00000423548.1:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.366A>G
  hgvsp: ENST00000343542.5:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.123A>G
  hgvsp: ENST00000460056.2:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53544
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro122Pro
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

4-159520559-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520559
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520559
    reference: chr 4
allele count: 11
allele frequency: 9.166513891435143e-5
allele num: 120002
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.368C>T
  hgvsp: ENSP00000432036.1:p.Ser123Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.368C>T
  hgvsp: ENSP00000345889.5:p.Ser123Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.368C>T
  hgvsp: ENSP00000303248.5:p.Ser123Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.269C>T
  hgvsp: ENSP00000420712.1:p.Ser90Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.368C>T
  hgvsp: ENSP00000405841.1:p.Ser123Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.125C>T
  hgvsp: ENSP00000423306.1:p.Ser42Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.125C>T
  hgvsp: ENSP00000414885.2:p.Ser42Leu
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.368C>T
  hgvsp: ENSP00000434475.1:p.Ser123Leu
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser123Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

4-159520560-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520560
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520560
    reference: chr 4
allele count: 4
allele frequency: 3.333833408344585e-5
allele num: 119982
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.369G>A
  hgvsp: ENST00000307765.5:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.126G>A
  hgvsp: ENST00000460056.2:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.369G>A
  hgvsp: ENST00000423548.1:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.369G>A
  hgvsp: ENST00000342048.5:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.126G>A
  hgvsp: ENST00000448688.2:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.270G>A
  hgvsp: ENST00000470033.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.369G>A
  hgvsp: ENST00000471616.1:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.369G>A
  hgvsp: ENST00000343542.5:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10904
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53362
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser123Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-159520578-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159520578
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 159520578
    reference: chr 4
allele count: 2
allele frequency: 1.694628029147602e-5
allele num: 118020
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000420712
  ensembl transcript: ENST00000470033
  gene symbol: RXFP1
  hgvsc: ENST00000470033.1:c.288T>C
  hgvsp: ENST00000470033.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000405841
  ensembl transcript: ENST00000423548
  gene symbol: RXFP1
  hgvsc: ENST00000423548.1:c.387T>C
  hgvsp: ENST00000423548.1:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000423306
  ensembl transcript: ENST00000460056
  gene symbol: RXFP1
  hgvsc: ENST00000460056.2:c.144T>C
  hgvsp: ENST00000460056.2:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000414885
  ensembl transcript: ENST00000448688
  gene symbol: RXFP1
  hgvsc: ENST00000448688.2:c.144T>C
  hgvsp: ENST00000448688.2:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000345889
  ensembl transcript: ENST00000343542
  gene symbol: RXFP1
  hgvsc: ENST00000343542.5:c.387T>C
  hgvsp: ENST00000343542.5:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000303248
  ensembl transcript: ENST00000307765
  gene symbol: RXFP1
  hgvsc: ENST00000307765.5:c.387T>C
  hgvsp: ENST00000307765.5:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000432036
  ensembl transcript: ENST00000342048
  gene symbol: RXFP1
  hgvsc: ENST00000342048.5:c.387T>C
  hgvsp: ENST00000342048.5:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171509
  ensembl protein: ENSP00000434475
  ensembl transcript: ENST00000471616
  gene symbol: RXFP1
  hgvsc: ENST00000471616.1:c.387T>C
  hgvsp: ENST00000471616.1:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr129Thr
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3953
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7728
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3990
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3944
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4532
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.55e-1

DP
type: SiteQuality
SIO_000300: 2.738241e6

MQ
type: SiteQuality
SIO_000300: 5.945e1

FS
type: SiteQuality
SIO_000300: 9.399999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.63e-1

QD
type: SiteQuality
SIO_000300: 1.025e1

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2232
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31087
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3988
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3939
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.91e-1

FS
type: SiteQuality
SIO_000300: 2.032e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.55e0

MQRankSum
type: SiteQuality
SIO_000300: 6.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.277e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

DP
type: SiteQuality
SIO_000300: 2.736862e6

VQSLOD
type: SiteQuality
SIO_000300: -8.578e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.39e-1

GenotypeQuality
all individuals: 342
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3881
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6915
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3969
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31075
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 426
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3789
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2156
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.031772980839195e-4
allele num: 16492
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.728159e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.513e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.2e0

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

FS
type: SiteQuality
SIO_000300: 1.751e0

QD
type: SiteQuality
SIO_000300: 1.359e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

GenotypeQuality
all individuals: 2151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31065
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3965
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3869
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4083
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6818
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.915e0

QD
type: SiteQuality
SIO_000300: 1.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

DP
type: SiteQuality
SIO_000300: 2.720115e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e0

FS
type: SiteQuality
SIO_000300: 6.193e0

VQSLOD
type: SiteQuality
SIO_000300: -1.07e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3866
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4026
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6405
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31065
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.056e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.448e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.349e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

DP
type: SiteQuality
SIO_000300: 2.717735e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

GenotypeQuality
all individuals: 273
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3747
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3959
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31065
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6478
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4006
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.948e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.45e-1

QD
type: SiteQuality
SIO_000300: 1.714e1

VQSLOD
type: SiteQuality
SIO_000300: -5.831e-1

DP
type: SiteQuality
SIO_000300: 2.717534e6

GenotypeQuality
all individuals: 444
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3884
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5767
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3957
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3738
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3862
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2044
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31066
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 2.714709e6

VQSLOD
type: SiteQuality
SIO_000300: 4.9e-1

FS
type: SiteQuality
SIO_000300: 1.782e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.24e-1

QD
type: SiteQuality
SIO_000300: 1.366e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.97e-1

GenotypeQuality
all individuals: 444
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

FS
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BaseQRankSum
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MQ
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InbreedingCoeff
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QD
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MQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.007115621340859e-5
allele num: 66614
num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66626
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East Asian
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allele num: 8612
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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QD
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FS
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8176
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 1.214181641573579e-4
allele num: 8236
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44158
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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FS
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 6.04e1

BaseQRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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Latino
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allele frequency: 0.0e0
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Other
type: Population
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QD
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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MQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11714
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44486
num of homozygotes: 0

Latino
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African
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allele frequency: 2.421893921046258e-4
allele num: 8258
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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ClippingRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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QD
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.072624772011275e-5
allele num: 48248
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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African
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East Asian
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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allele num: 53162
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Latino
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South Asian
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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ReadPosRankSum
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FS
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MQRankSum
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MQ
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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South Asian
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MQ
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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FS
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ReadPosRankSum
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QD
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SIO_000300: 1.629e1

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

GenotypeQuality
all individuals: 3660
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 2435
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9350
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.260398285858331e-4
allele num: 7934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57076
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.455e-1

FS
type: SiteQuality
SIO_000300: 3.804e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.84e0

DP
type: SiteQuality
SIO_000300: 1.485358e6

QD
type: SiteQuality
SIO_000300: 8.4e0

GenotypeQuality
all individuals: 3660
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6850
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.736834792274559e-5
allele num: 57576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.493179e6

MQRankSum
type: SiteQuality
SIO_000300: -7.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

QD
type: SiteQuality
SIO_000300: 8.34e0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3660
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 226
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.596576939042693e-5
allele num: 62634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.039068994181214e-4
allele num: 9624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15538
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.124e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.3e-2

QD
type: SiteQuality
SIO_000300: 1.619e1

DP
type: SiteQuality
SIO_000300: 1.574347e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e0

GenotypeQuality
all individuals: 207
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 2939
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533695285420693e-5
allele num: 65202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.52e-1

DP
type: SiteQuality
SIO_000300: 1.618011e6

FS
type: SiteQuality
SIO_000300: 2.331e0

QD
type: SiteQuality
SIO_000300: 1.534e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.253e0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 184
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variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.617306520414382e-5
allele num: 65640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

QD
type: SiteQuality
SIO_000300: 1.052e1

DP
type: SiteQuality
SIO_000300: 1.626544e6

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 244
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GenotypeQuality
all individuals: 3659
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 757
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5220700152207e-5
allele num: 65700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16194
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.627333e6

MQRankSum
type: SiteQuality
SIO_000300: -6.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.531e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 334
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.175126590095097e-5
allele num: 16194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65700
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.86e0

QD
type: SiteQuality
SIO_000300: 1.531e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.11e-1

DP
type: SiteQuality
SIO_000300: 1.627333e6

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
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GenotypeQuality
all individuals: 752
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GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 704
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3659
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2943
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.176652254478072e-5
allele num: 16190
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.726e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.56e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

QD
type: SiteQuality
SIO_000300: 7.62e0

GenotypeQuality
all individuals: 507
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variant carriers: 0

GenotypeQuality
all individuals: 164
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 3660
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 108
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GenotypeQuality
all individuals: 246
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GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 2920
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GenotypeQuality
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GenotypeQuality
all individuals: 749
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GenotypeQuality
all individuals: 128
bin: 3.25e1
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GenotypeQuality
all individuals: 49023
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526484506182262e-5
allele num: 65510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.025851456709069e-4
allele num: 9748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.916e1

VQSLOD
type: SiteQuality
SIO_000300: -4.979e-1

QD
type: SiteQuality
SIO_000300: 7.64e0

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

DP
type: SiteQuality
SIO_000300: 1.623349e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.827e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528257480820369e-5
allele num: 65434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.324e1

VQSLOD
type: SiteQuality
SIO_000300: 9.01e-1

DP
type: SiteQuality
SIO_000300: 1.621745e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.363e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65312
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.208095356344674e-5
allele num: 16108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.099e0

FS
type: SiteQuality
SIO_000300: 2.158e0

VQSLOD
type: SiteQuality
SIO_000300: -2.756e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 8.77e0

DP
type: SiteQuality
SIO_000300: 1.618852e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546646869586736e-5
allele num: 64656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.32e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.558e0

FS
type: SiteQuality
SIO_000300: 4.945e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e-1

DP
type: SiteQuality
SIO_000300: 1.602631e6

QD
type: SiteQuality
SIO_000300: 1.577e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559283976797854e-5
allele num: 64132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.57e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.401e1

VQSLOD
type: SiteQuality
SIO_000300: -1.028e-1

MQ
type: SiteQuality
SIO_000300: 5.905e1

DP
type: SiteQuality
SIO_000300: 1.587332e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.285842870001286e-4
allele num: 15554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63068
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e0

FS
type: SiteQuality
SIO_000300: 2.609e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 1.54713e6

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.175e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62438
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.477522995206633e-5
allele num: 15438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.27e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.261472228563974e-5
allele num: 61322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10988
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.575e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9532
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15120
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6334
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60766
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.189487226612754e-5
allele num: 10882
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -1.183e0

BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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ClippingRankSum
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DP
type: SiteQuality
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MQ
type: SiteQuality
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QD
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12740
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13886
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 5.500751769408486e-5
allele num: 54538
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7424
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

FS
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

QD
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MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.24698e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 2.160449373469682e-4
allele num: 13886
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 54538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9186
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 12666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7482
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 912
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.66e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.226e1

VQSLOD
type: SiteQuality
SIO_000300: -8.134e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 12734
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2700
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.316829075585989e-4
allele num: 7594
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.076e0

DP
type: SiteQuality
SIO_000300: 4.95523e5

FS
type: SiteQuality
SIO_000300: 3.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.65e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.523e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

QD
type: SiteQuality
SIO_000300: 1.567e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 242
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7600
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1052
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 7.778469197261979e-5
allele num: 12856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.48e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.741e0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.805e-1

DP
type: SiteQuality
SIO_000300: 5.07188e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.188e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.551729346020239e-5
allele num: 13242
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 980
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.27564e5

MQRankSum
type: SiteQuality
SIO_000300: -8.95e-1

QD
type: SiteQuality
SIO_000300: 1.444e1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.271617497456765e-4
allele num: 7864
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1186
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 13746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 962
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ClippingRankSum
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DP
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ReadPosRankSum
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QD
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InbreedingCoeff
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FS
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VQSLOD
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BaseQRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 286
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Latino
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allele num: 1214
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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DP
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 7.320644216691069e-4
allele num: 1366
num of homozygotes: 0

South Asian
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European (Finnish)
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
type: Population
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Other
type: Population
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MQRankSum
type: SiteQuality
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QD
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ClippingRankSum
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MQ
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VQSLOD
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FS
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ReadPosRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele num: 478
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.375869286341233e-5
allele num: 29622
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5126
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.088e0

DP
type: SiteQuality
SIO_000300: 8.65044e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.286e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

QD
type: SiteQuality
SIO_000300: 1.008e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.889999999999999e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5450
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 32410
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 2.893518518518518e-4
allele num: 3456
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3794
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.32e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.37e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.94309e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3816
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 35808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4494
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.947745168217609e-5
allele num: 11176
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.43846e5

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.035e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.8e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.729812390436761e-5
allele num: 53622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.33e-1

FS
type: SiteQuality
SIO_000300: 1.225e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

DP
type: SiteQuality
SIO_000300: 1.202329e6

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.109e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5770
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.192168546499255e-4
allele num: 9398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57088
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.253412e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.248e0

QD
type: SiteQuality
SIO_000300: 1.4e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

FS
type: SiteQuality
SIO_000300: 3.058e0

VQSLOD
type: SiteQuality
SIO_000300: 6.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.090234857849196e-4
allele num: 9708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11230
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

DP
type: SiteQuality
SIO_000300: 1.402001e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.69e-1

FS
type: SiteQuality
SIO_000300: 2.179e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.522e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510528382828313e-5
allele num: 66202
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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QD
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.110228522546743e-5
allele num: 16366
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66424
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
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allele count: 0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 1.413645e6

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
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FS
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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European (Finnish)
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Other
type: Population
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African
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East Asian
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allele num: 8586
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South Asian
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

African
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South Asian
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66516
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Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -8.159999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

FS
type: SiteQuality
SIO_000300: 3.303e0

DP
type: SiteQuality
SIO_000300: 1.416469e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.336e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 1.417485e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.81e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

QD
type: SiteQuality
SIO_000300: 1.514e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.418861e6

BaseQRankSum
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SIO_000300: 2.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

QD
type: SiteQuality
SIO_000300: 1.353e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.520681265206813e-4
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.089e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

VQSLOD
type: SiteQuality
SIO_000300: 5.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

QD
type: SiteQuality
SIO_000300: 1.348e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

DP
type: SiteQuality
SIO_000300: 1.419084e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

QD
type: SiteQuality
SIO_000300: 1.348e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.06e-1

FS
type: SiteQuality
SIO_000300: 7.089e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 1.419084e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16333178222429e-4
allele num: 8596
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 2.040816326530612e-4
allele num: 9800
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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QD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 7
allele frequency: 7.142857142857143e-4
allele num: 9800
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66596
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Latino
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num of homozygotes: 0

Other
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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MQRankSum
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QD
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.419921e6

VQSLOD
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
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East Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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South Asian
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allele num: 16492
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FS
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQ
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
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allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
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SIO_000300: 1.420825e6

ReadPosRankSum
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SIO_000300: 4.07e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.418e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.22e-1

DP
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QD
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MQRankSum
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BaseQRankSum
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SIO_000300: -2.204e0

InbreedingCoeff
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ReadPosRankSum
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SIO_000300: 5.2e-2

VQSLOD
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SIO_000300: -2.621e-1

MQ
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SIO_000300: 5.968e1

ClippingRankSum
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SIO_000300: -1.9e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 1.213150551983501e-4
allele num: 16486
num of homozygotes: 1

VQSLOD
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SIO_000300: -1.779e0

BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 5.46e-2

DP
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.374e0

DP
type: SiteQuality
SIO_000300: 1.420364e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.46e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.779e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.277e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002462018855461e-5
allele num: 66612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
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MQRankSum
type: SiteQuality
SIO_000300: 9.71e-1

DP
type: SiteQuality
SIO_000300: 1.420122e6

FS
type: SiteQuality
SIO_000300: 3.594e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.05e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.19e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50253929140247e-5
allele num: 66554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
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African
type: Population
allele count: 1
allele frequency: 1.021450459652707e-4
allele num: 9790
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.08e-1

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.051840721262209e-4
allele num: 66550
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South Asian
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African
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Other
type: Population
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East Asian
type: Population
allele count: 2
allele frequency: 2.328288707799767e-4
allele num: 8590
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Latino
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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QD
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FS
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MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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Other
type: Population
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African
type: Population
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European (Non-Finnish)
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South Asian
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Latino
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European (Finnish)
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FS
type: SiteQuality
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MQRankSum
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DP
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MQ
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ClippingRankSum
type: SiteQuality
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QD
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 6
allele frequency: 9.038867128653209e-5
allele num: 66380
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Latino
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South Asian
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Other
type: Population
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allele num: 896
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African
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East Asian
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allele frequency: 1.167133520074697e-4
allele num: 8568
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European (Finnish)
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allele count: 3
allele frequency: 4.574565416285453e-4
allele num: 6558
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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InbreedingCoeff
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QD
type: SiteQuality
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VQSLOD
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FS
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MQ
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: 3.58e0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2840
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023960679909891e-4
allele num: 9766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.520523175215478e-5
allele num: 66364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.414692e6

MQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

FS
type: SiteQuality
SIO_000300: 5.611e0

VQSLOD
type: SiteQuality
SIO_000300: 7.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.334e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0