3-50415527-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415527
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415527
    reference: chr 3
allele count: 1
allele frequency: 8.369601606963508e-6
allele num: 119480
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1391A>T
  hgvsp: ENSP00000404631.1:p.Glu464Val
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1184A>T
  hgvsp: ENSP00000354228.3:p.Glu395Val
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1391A>T
  hgvsp: ENSP00000378519.1:p.Glu464Val
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1391A>T
  hgvsp: ENSP00000418081.1:p.Glu464Val
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1391A>T
  hgvsp: ENSP00000266039.3:p.Glu464Val
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1391A>T
  hgvsp: ENSP00000390526.1:p.Glu464Val
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1391A>T
  hgvsp: ENSP00000407393.2:p.Glu464Val
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1391A>T
  hgvsp: ENSP00000390329.2:p.Glu464Val
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu464Val
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

3-50415534-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415534
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415534
    reference: chr 3
allele count: 2
allele frequency: 1.67627732332037e-5
allele num: 119312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1390-6C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1390-6C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1390-6C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1183-6C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1390-6C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1390-6C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1390-6C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1390-6C>A
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31680
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1390-6C>A
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ

3-50415537-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415537
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415537
    reference: chr 3
allele count: 15
allele frequency: 1.258368148185433e-4
allele num: 119202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1183-9C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1390-9C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1390-9C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1390-9C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1390-9C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1390-9C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1390-9C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1390-9C>A
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8216
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14812
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3886
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31318
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-50415542-AGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415542
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415540
    reference: chr 3
allele count: 1
allele frequency: 8.402655239055541e-6
allele num: 119010
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1390-16_1390-15delAC
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1183-16_1183-15delAC
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1390-16_1390-15delAC
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1390-16_1390-15delAC
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1390-16_1390-15delAC
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1390-16_1390-15delAC
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1390-16_1390-15delAC
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1390-16_1390-15delAC
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3856
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2500
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9749
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4298
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: AGT
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

3-50415545-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415545
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415545
    reference: chr 3
allele count: 1
allele frequency: 8.411843876177658e-6
allele num: 118880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1390-17C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1390-17C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1183-17C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1390-17C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1390-17C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1390-17C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1390-17C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1390-17C>A
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14340
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3066
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30294
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4291
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-50415548-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415548
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415548
    reference: chr 3
allele count: 1
allele frequency: 8.417650128790047e-6
allele num: 118798
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1390-20C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1183-20C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1390-20C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1390-20C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1390-20C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1390-20C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1390-20C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1390-20C>G
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29797
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

3-50415550-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415550
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415550
    reference: chr 3
allele count: 1
allele frequency: 8.420768984623676e-6
allele num: 118754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1183-22C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1390-22C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1390-22C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1390-22C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1390-22C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1390-22C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1390-22C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1390-22C>A
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3761
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9370
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

3-50415563-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415563
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415563
    reference: chr 3
allele count: 3
allele frequency: 2.535282684019268e-5
allele num: 118330
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1390-35G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1390-35G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1390-35G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1390-35G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1390-35G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1390-35G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1390-35G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1183-35G>A
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19010
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

3-50415572-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415572
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415572
    reference: chr 3
allele count: 11
allele frequency: 9.337226673910091e-5
allele num: 117808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1390-44C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1390-44C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1390-44C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1390-44C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1390-44C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1183-44C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1390-44C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1390-44C>T
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10891
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14804
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10332
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9240
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3810
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

3-50415577-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415577
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415577
    reference: chr 3
allele count: 1
allele frequency: 8.53373384990869e-6
allele num: 117182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1390-49C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1390-49C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1390-49C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1390-49C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1390-49C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1390-49C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1390-49C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1183-49C>T
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7954
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3013
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3250
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

3-50415579-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415579
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415579
    reference: chr 3
allele count: 1
allele frequency: 8.559738414394057e-6
allele num: 116826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1390-51G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1390-51G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1390-51G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1390-51G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1390-51G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1390-51G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1390-51G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1183-51G>A
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7656
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3060
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8702
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2590
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

3-50415664-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415664
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415664
    reference: chr 3
allele count: 251
allele frequency: 9.069885090698851e-3
allele num: 27674
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1389+51C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1389+51C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1389+51C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1389+51C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1389+51C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1389+51C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1389+51C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1182+51C>T
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16761
  bin: 7.5e0
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 26885
  bin: 2.5e0
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 1.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 3.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3829
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 7.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 14
num of homozygotes: 3
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

3-50415668-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415668
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415668
    reference: chr 3
allele count: 4
allele frequency: 1.490312965722802e-4
allele num: 26840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1389+47G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1389+47G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1389+47G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1182+47G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1389+47G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1389+47G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1389+47G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1389+47G>A
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28044
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15862
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2930
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12101
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-50415670-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415670
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415670
    reference: chr 3
allele count: 1
allele frequency: 3.791900500530866e-5
allele num: 26372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1389+45C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1182+45C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1389+45C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1389+45C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1389+45C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1389+45C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1389+45C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1389+45C>T
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28688
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5958
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11778
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

3-50415678-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415678
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415679
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 24252
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1182+36dupG
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1389+36dupG
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1389+36dupG
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1389+36dupG
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1389+36dupG
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1389+36dupG
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1389+36dupG
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1389+36dupG
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30857
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13369
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5961
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29170
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

3-50415679-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415679
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415679
    reference: chr 3
allele count: 1
allele frequency: 4.125072188763303e-5
allele num: 24242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1389+36G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1389+36G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1182+36G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1389+36G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1389+36G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1389+36G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1389+36G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1389+36G>A
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30925
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5961
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29386
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

3-50415686-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415686
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415686
    reference: chr 3
allele count: 1
allele frequency: 4.310344827586207e-5
allele num: 23200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1389+29G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1389+29G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1182+29G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1389+29G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1389+29G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1389+29G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1389+29G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1389+29G>A
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30473
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

3-50415687-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415687
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415687
    reference: chr 3
allele count: 3
allele frequency: 1.298701298701299e-4
allele num: 23100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1389+28A>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1389+28A>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1389+28A>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1182+28A>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1389+28A>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1389+28A>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1389+28A>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1389+28A>T
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32385
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11805
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30713
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5963
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8323
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

3-50415688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415688
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415688
    reference: chr 3
allele count: 11
allele frequency: 4.814004376367615e-4
allele num: 22850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1389+27C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1389+27C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1389+27C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1182+27C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1389+27C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1389+27C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1389+27C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1389+27C>T
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32590
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11447
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30718
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

3-50415739-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415739
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415739
    reference: chr 3
allele count: 2
allele frequency: 9.445546424860678e-5
allele num: 21174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1365C>T
  hgvsp: ENST00000424201.2:c.1365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1365C>T
  hgvsp: ENST00000266039.3:c.1365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1365C>T
  hgvsp: ENST00000423994.2:c.1365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1365C>T
  hgvsp: ENST00000395083.1:c.1365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1158C>T
  hgvsp: ENST00000360963.3:c.1158C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1365C>T
  hgvsp: ENST00000435965.1:c.1365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1365C>T
  hgvsp: ENST00000429770.1:c.1365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1365C>T
  hgvsp: ENST00000479441.1:c.1365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34248
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31493
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile455Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

3-50415781-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415781
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415781
    reference: chr 3
allele count: 16
allele frequency: 7.645259938837921e-4
allele num: 20928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1133-17C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1340-17C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1340-17C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1340-17C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1340-17C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1340-17C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1340-17C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1340-17C>T
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28891
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24794
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum

3-50415792-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415792
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415792
    reference: chr 3
allele count: 1
allele frequency: 4.793404275716614e-5
allele num: 20862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1133-28C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1340-28C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1340-28C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1340-28C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1340-28C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1340-28C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1340-28C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1340-28C>T
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum

3-50415804-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415804
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415804
    reference: chr 3
allele count: 1
allele frequency: 4.79570305006714e-5
allele num: 20852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1340-40G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1340-40G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1340-40G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1133-40G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1340-40G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1340-40G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1340-40G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1340-40G>A
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26731
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7535
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

3-50415808-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415808
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415808
    reference: chr 3
allele count: 4
allele frequency: 1.919201612129354e-4
allele num: 20842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1340-44T>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1340-44T>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1340-44T>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1340-44T>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1340-44T>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1340-44T>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1133-44T>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1340-44T>A
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18520
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

3-50415809-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50415809
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50415809
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 20848
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1340-45C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1340-45C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1340-45C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1340-45C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1340-45C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1340-45C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1133-45C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1340-45C>G
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26550
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9134
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD

3-50416298-AAAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416298
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416294
    reference: chr 3
allele count: 30
allele frequency: 2.508403150554357e-4
allele num: 119598
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1339+44_1339+47delCTTT
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1339+44_1339+47delCTTT
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1339+44_1339+47delCTTT
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1339+44_1339+47delCTTT
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1339+44_1339+47delCTTT
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1132+44_1132+47delCTTT
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1339+44_1339+47delCTTT
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1339+44_1339+47delCTTT
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15409
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20081
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8505
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8579
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: AAAAG
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

3-50416302-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416302
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416302
    reference: chr 3
allele count: 1
allele frequency: 8.390387971539804e-6
allele num: 119184
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1339+44C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1132+44C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1339+44C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1339+44C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1339+44C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1339+44C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1339+44C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1339+44C>G
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2702
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

3-50416306-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416306
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416306
    reference: chr 3
allele count: 1
allele frequency: 8.391655337931961e-6
allele num: 119166
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1339+40A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1339+40A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1132+40A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1339+40A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1339+40A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1339+40A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1339+40A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1339+40A>G
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4577
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30516
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-50416317-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416317
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416317
    reference: chr 3
allele count: 1
allele frequency: 8.504413790757403e-6
allele num: 117586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1339+29G>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1339+29G>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1339+29G>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1339+29G>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1339+29G>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1132+29G>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1339+29G>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1339+29G>T
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31880
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

3-50416317-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416317
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416317
    reference: chr 3
allele count: 22
allele frequency: 1.870971033966629e-4
allele num: 117586
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1339+29G>C
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1339+29G>C
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1339+29G>C
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1339+29G>C
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1339+29G>C
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1339+29G>C
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1132+29G>C
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1339+29G>C
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17437
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22295
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8912
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 31880
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.5e0
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

3-50416318-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416318
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416318
    reference: chr 3
allele count: 1
allele frequency: 8.368761088608442e-6
allele num: 119492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1339+28G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1339+28G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1339+28G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1339+28G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1339+28G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1132+28G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1339+28G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1339+28G>A
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4660
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

3-50416319-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416319
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416317
    reference: chr 3
allele count: 1
allele frequency: 8.365540664893172e-6
allele num: 119538
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1339+25_1339+26delAG
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1339+25_1339+26delAG
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1339+25_1339+26delAG
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1339+25_1339+26delAG
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1339+25_1339+26delAG
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1132+25_1132+26delAG
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1339+25_1339+26delAG
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1339+25_1339+26delAG
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: CCT
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

3-50416324-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416324
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416324
    reference: chr 3
allele count: 1
allele frequency: 8.359666282122017e-6
allele num: 119622
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1339+22G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1339+22G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1132+22G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1339+22G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1339+22G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1339+22G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1339+22G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1339+22G>A
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4678
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8832
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-50416329-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416329
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416329
    reference: chr 3
allele count: 1
allele frequency: 8.346688034188035e-6
allele num: 119808
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1132+17T>C
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1339+17T>C
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1339+17T>C
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1339+17T>C
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1339+17T>C
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1339+17T>C
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1339+17T>C
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1339+17T>C
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

3-50416330-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416330
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416330
    reference: chr 3
allele count: 1
allele frequency: 8.3462700519138e-6
allele num: 119814
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1339+16A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1132+16A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1339+16A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1339+16A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1339+16A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1339+16A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1339+16A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1339+16A>G
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ

3-50416332-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416332
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416332
    reference: chr 3
allele count: 2
allele frequency: 1.66939334245935e-5
allele num: 119804
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1339+14G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1132+14G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1339+14G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1339+14G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1339+14G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1339+14G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1339+14G>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1339+14G>A
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4685
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2918
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS

3-50416333-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416333
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416333
    reference: chr 3
allele count: 1
allele frequency: 8.338336335134414e-6
allele num: 119928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1339+13C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1339+13C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1339+13C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1339+13C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1339+13C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1132+13C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1339+13C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1339+13C>T
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4684
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2920
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-50416334-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416334
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416335
    reference: chr 3
allele count: 1
allele frequency: 8.333472224537076e-6
allele num: 119998
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1339+11dupT
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1339+11dupT
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1132+11dupT
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1339+11dupT
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1339+11dupT
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1339+11dupT
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1339+11dupT
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1339+11dupT
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

3-50416336-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416336
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416336
    reference: chr 3
allele count: 1
allele frequency: 8.329862557267805e-6
allele num: 120050
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1132+10C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1339+10C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1339+10C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1339+10C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1339+10C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1339+10C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1339+10C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1339+10C>G
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19015
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9071
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

3-50416343-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416343
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416343
    reference: chr 3
allele count: 3
allele frequency: 2.500583469476211e-5
allele num: 119972
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1339+3A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1339+3A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1339+3A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1339+3A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1339+3A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1339+3A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1339+3A>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1132+3A>G
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1339+3A>G
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

3-50416352-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416352
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416352
    reference: chr 3
allele count: 1
allele frequency: 8.307303781484682e-6
allele num: 120376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1333A>G
  hgvsp: ENSP00000266039.3:p.Asn445Asp
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1126A>G
  hgvsp: ENSP00000354228.3:p.Asn376Asp
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1333A>G
  hgvsp: ENSP00000378519.1:p.Asn445Asp
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1333A>G
  hgvsp: ENSP00000407393.2:p.Asn445Asp
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1333A>G
  hgvsp: ENSP00000390526.1:p.Asn445Asp
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1333A>G
  hgvsp: ENSP00000390329.2:p.Asn445Asp
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1333A>G
  hgvsp: ENSP00000404631.1:p.Asn445Asp
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1333A>G
  hgvsp: ENSP00000418081.1:p.Asn445Asp
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4691
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn445Asp
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

3-50416360-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416360
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416360
    reference: chr 3
allele count: 1
allele frequency: 8.299719469481931e-6
allele num: 120486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1118C>T
  hgvsp: ENSP00000354228.3:p.Ala373Val
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1325C>T
  hgvsp: ENSP00000378519.1:p.Ala442Val
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1325C>T
  hgvsp: ENSP00000418081.1:p.Ala442Val
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1325C>T
  hgvsp: ENSP00000407393.2:p.Ala442Val
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1325C>T
  hgvsp: ENSP00000390329.2:p.Ala442Val
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1325C>T
  hgvsp: ENSP00000266039.3:p.Ala442Val
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1325C>T
  hgvsp: ENSP00000390526.1:p.Ala442Val
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1325C>T
  hgvsp: ENSP00000404631.1:p.Ala442Val
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala442Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS

3-50416367-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416367
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416367
    reference: chr 3
allele count: 1
allele frequency: 8.295726041943191e-6
allele num: 120544
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1111T>C
  hgvsp: ENSP00000354228.3:p.Trp371Arg
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1318T>C
  hgvsp: ENSP00000407393.2:p.Trp440Arg
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1318T>C
  hgvsp: ENSP00000390526.1:p.Trp440Arg
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1318T>C
  hgvsp: ENSP00000404631.1:p.Trp440Arg
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1318T>C
  hgvsp: ENSP00000378519.1:p.Trp440Arg
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1318T>C
  hgvsp: ENSP00000390329.2:p.Trp440Arg
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1318T>C
  hgvsp: ENSP00000418081.1:p.Trp440Arg
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1318T>C
  hgvsp: ENSP00000266039.3:p.Trp440Arg
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36480
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp440Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

3-50416368-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416368
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416368
    reference: chr 3
allele count: 1
allele frequency: 8.295175525914129e-6
allele num: 120552
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1317G>A
  hgvsp: ENST00000266039.3:c.1317G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1110G>A
  hgvsp: ENST00000360963.3:c.1110G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1317G>A
  hgvsp: ENST00000423994.2:c.1317G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1317G>A
  hgvsp: ENST00000429770.1:c.1317G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1317G>A
  hgvsp: ENST00000435965.1:c.1317G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1317G>A
  hgvsp: ENST00000395083.1:c.1317G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1317G>A
  hgvsp: ENST00000424201.2:c.1317G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1317G>A
  hgvsp: ENST00000479441.1:c.1317G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4688
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln439Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-50416374-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416374
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416374
    reference: chr 3
allele count: 1
allele frequency: 8.292836647703714e-6
allele num: 120586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1311G>T
  hgvsp: ENST00000424201.2:c.1311G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1311G>T
  hgvsp: ENST00000435965.1:c.1311G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1104G>T
  hgvsp: ENST00000360963.3:c.1104G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1311G>T
  hgvsp: ENST00000266039.3:c.1311G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1311G>T
  hgvsp: ENST00000395083.1:c.1311G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1311G>T
  hgvsp: ENST00000429770.1:c.1311G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1311G>T
  hgvsp: ENST00000423994.2:c.1311G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1311G>T
  hgvsp: ENST00000479441.1:c.1311G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro437Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD

3-50416374-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416374
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416374
    reference: chr 3
allele count: 4
allele frequency: 3.317134659081486e-5
allele num: 120586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1104G>A
  hgvsp: ENST00000360963.3:c.1104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1311G>A
  hgvsp: ENST00000395083.1:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1311G>A
  hgvsp: ENST00000429770.1:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1311G>A
  hgvsp: ENST00000479441.1:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1311G>A
  hgvsp: ENST00000435965.1:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1311G>A
  hgvsp: ENST00000424201.2:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1311G>A
  hgvsp: ENST00000266039.3:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1311G>A
  hgvsp: ENST00000423994.2:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9127
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro437Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-50416375-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416375
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416375
    reference: chr 3
allele count: 2
allele frequency: 1.658622348277521e-5
allele num: 120582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1310C>T
  hgvsp: ENSP00000407393.2:p.Pro437Leu
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1103C>T
  hgvsp: ENSP00000354228.3:p.Pro368Leu
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1310C>T
  hgvsp: ENSP00000418081.1:p.Pro437Leu
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1310C>T
  hgvsp: ENSP00000390329.2:p.Pro437Leu
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1310C>T
  hgvsp: ENSP00000266039.3:p.Pro437Leu
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1310C>T
  hgvsp: ENSP00000390526.1:p.Pro437Leu
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1310C>T
  hgvsp: ENSP00000378519.1:p.Pro437Leu
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1310C>T
  hgvsp: ENSP00000404631.1:p.Pro437Leu
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9208
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36504
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro437Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

3-50416375-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416375
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416375
    reference: chr 3
allele count: 1
allele frequency: 8.293111741387604e-6
allele num: 120582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1310C>G
  hgvsp: ENSP00000378519.1:p.Pro437Arg
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1310C>G
  hgvsp: ENSP00000390329.2:p.Pro437Arg
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1310C>G
  hgvsp: ENSP00000418081.1:p.Pro437Arg
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1310C>G
  hgvsp: ENSP00000407393.2:p.Pro437Arg
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1310C>G
  hgvsp: ENSP00000390526.1:p.Pro437Arg
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1310C>G
  hgvsp: ENSP00000266039.3:p.Pro437Arg
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1310C>G
  hgvsp: ENSP00000404631.1:p.Pro437Arg
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1103C>G
  hgvsp: ENSP00000354228.3:p.Pro368Arg
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro437Arg
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

3-50416382-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416382
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416382
    reference: chr 3
allele count: 24
allele frequency: 1.989983748466054e-4
allele num: 120604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1303G>A
  hgvsp: ENSP00000266039.3:p.Val435Ile
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1303G>A
  hgvsp: ENSP00000404631.1:p.Val435Ile
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1303G>A
  hgvsp: ENSP00000418081.1:p.Val435Ile
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1303G>A
  hgvsp: ENSP00000378519.1:p.Val435Ile
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1303G>A
  hgvsp: ENSP00000390526.1:p.Val435Ile
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1303G>A
  hgvsp: ENSP00000390329.2:p.Val435Ile
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1303G>A
  hgvsp: ENSP00000407393.2:p.Val435Ile
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1096G>A
  hgvsp: ENSP00000354228.3:p.Val366Ile
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val435Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ

3-50416383-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416383
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416383
    reference: chr 3
allele count: 1
allele frequency: 8.291873963515755e-6
allele num: 120600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1095C>T
  hgvsp: ENST00000360963.3:c.1095C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1302C>T
  hgvsp: ENST00000266039.3:c.1302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1302C>T
  hgvsp: ENST00000424201.2:c.1302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1302C>T
  hgvsp: ENST00000429770.1:c.1302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1302C>T
  hgvsp: ENST00000479441.1:c.1302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1302C>T
  hgvsp: ENST00000395083.1:c.1302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1302C>T
  hgvsp: ENST00000423994.2:c.1302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1302C>T
  hgvsp: ENST00000435965.1:c.1302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4681
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp434Asp
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

3-50416403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416403
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416403
    reference: chr 3
allele count: 1
allele frequency: 8.291461452995706e-6
allele num: 120606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1282G>A
  hgvsp: ENSP00000266039.3:p.Val428Met
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1282G>A
  hgvsp: ENSP00000418081.1:p.Val428Met
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1282G>A
  hgvsp: ENSP00000390526.1:p.Val428Met
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1282G>A
  hgvsp: ENSP00000378519.1:p.Val428Met
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1282G>A
  hgvsp: ENSP00000390329.2:p.Val428Met
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1075G>A
  hgvsp: ENSP00000354228.3:p.Val359Met
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1282G>A
  hgvsp: ENSP00000407393.2:p.Val428Met
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1282G>A
  hgvsp: ENSP00000404631.1:p.Val428Met
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2875
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9094
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val428Met
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

3-50416404-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416404
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416404
    reference: chr 3
allele count: 1
allele frequency: 8.291598951941893e-6
allele num: 120604
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1074C>G
  hgvsp: ENST00000360963.3:c.1074C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1281C>G
  hgvsp: ENST00000266039.3:c.1281C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1281C>G
  hgvsp: ENST00000395083.1:c.1281C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1281C>G
  hgvsp: ENST00000424201.2:c.1281C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1281C>G
  hgvsp: ENST00000435965.1:c.1281C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1281C>G
  hgvsp: ENST00000479441.1:c.1281C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1281C>G
  hgvsp: ENST00000423994.2:c.1281C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1281C>G
  hgvsp: ENST00000429770.1:c.1281C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser427Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

3-50416407-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416407
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416407
    reference: chr 3
allele count: 1
allele frequency: 8.29132395860971e-6
allele num: 120608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1278C>T
  hgvsp: ENST00000429770.1:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1071C>T
  hgvsp: ENST00000360963.3:c.1071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1278C>T
  hgvsp: ENST00000395083.1:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1278C>T
  hgvsp: ENST00000424201.2:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1278C>T
  hgvsp: ENST00000423994.2:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1278C>T
  hgvsp: ENST00000479441.1:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1278C>T
  hgvsp: ENST00000266039.3:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1278C>T
  hgvsp: ENST00000435965.1:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4680
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe426Phe
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

3-50416419-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416419
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416419
    reference: chr 3
allele count: 3
allele frequency: 2.487974788522143e-5
allele num: 120580
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1266C>T
  hgvsp: ENST00000424201.2:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1266C>T
  hgvsp: ENST00000429770.1:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1266C>T
  hgvsp: ENST00000266039.3:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1266C>T
  hgvsp: ENST00000479441.1:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1266C>T
  hgvsp: ENST00000435965.1:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1266C>T
  hgvsp: ENST00000395083.1:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1266C>T
  hgvsp: ENST00000423994.2:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1059C>T
  hgvsp: ENST00000360963.3:c.1059C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4682
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg422Arg
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-50416422-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416422
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416422
    reference: chr 3
allele count: 1
allele frequency: 8.293386853323161e-6
allele num: 120578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1263G>A
  hgvsp: ENST00000395083.1:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1263G>A
  hgvsp: ENST00000479441.1:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1056G>A
  hgvsp: ENST00000360963.3:c.1056G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1263G>A
  hgvsp: ENST00000424201.2:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1263G>A
  hgvsp: ENST00000429770.1:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1263G>A
  hgvsp: ENST00000435965.1:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1263G>A
  hgvsp: ENST00000266039.3:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1263G>A
  hgvsp: ENST00000423994.2:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4678
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36292
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1263G>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

3-50416429-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416429
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416429
    reference: chr 3
allele count: 1
allele frequency: 8.294212298657997e-6
allele num: 120566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1261-5C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1261-5C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1261-5C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1261-5C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1261-5C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1261-5C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1054-5C>T
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1261-5C>T
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36098
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1261-5C>T
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-50416429-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416429
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416429
    reference: chr 3
allele count: 2
allele frequency: 1.658842459731599e-5
allele num: 120566
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1261-5C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1261-5C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1261-5C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1261-5C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1054-5C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1261-5C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1261-5C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1261-5C>G
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36098
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4832
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1261-5C>G
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff

3-50416429-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416429
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416429
    reference: chr 3
allele count: 214
allele frequency: 1.774961431912811e-3
allele num: 120566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1261-5C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1261-5C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1054-5C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1261-5C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1261-5C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1261-5C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1261-5C>A
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1261-5C>A
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 18577
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 24213
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9009
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36098
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1261-5C>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

3-50416438-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50416438
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 50416438
    reference: chr 3
allele count: 1
allele frequency: 8.29324929507381e-6
allele num: 120580
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000418081
  ensembl transcript: ENST00000479441
  gene symbol: CACNA2D2
  hgvsc: ENST00000479441.1:c.1261-14C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390329
  ensembl transcript: ENST00000424201
  gene symbol: CACNA2D2
  hgvsc: ENST00000424201.2:c.1261-14C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000404631
  ensembl transcript: ENST00000429770
  gene symbol: CACNA2D2
  hgvsc: ENST00000429770.1:c.1261-14C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000378519
  ensembl transcript: ENST00000395083
  gene symbol: CACNA2D2
  hgvsc: ENST00000395083.1:c.1261-14C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000266039
  ensembl transcript: ENST00000266039
  gene symbol: CACNA2D2
  hgvsc: ENST00000266039.3:c.1261-14C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000390526
  ensembl transcript: ENST00000435965
  gene symbol: CACNA2D2
  hgvsc: ENST00000435965.1:c.1261-14C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000407393
  ensembl transcript: ENST00000423994
  gene symbol: CACNA2D2
  hgvsc: ENST00000423994.2:c.1261-14C>G
  variant of: http://identifiers.org/hgnc/1400
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007402
  ensembl protein: ENSP00000354228
  ensembl transcript: ENST00000360963
  gene symbol: CACNA2D2
  hgvsc: ENST00000360963.3:c.1054-14C>G
  variant of: http://identifiers.org/hgnc/1400
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4712
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2910
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

7-17879496-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17879496
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 17879496
    reference: chr 7
allele count: 2
allele frequency: 1.671374371145393e-5
allele num: 119662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000387053
  ensembl transcript: ENST00000409076
  gene symbol: SNX13
  hgvsc: ENST00000409076.2:c.*991C>T
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000386705
  ensembl transcript: ENST00000409389
  gene symbol: SNX13
  hgvsc: ENST00000409389.1:c.1293C>T
  hgvsp: ENST00000409389.1:c.1293C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000397768
  ensembl transcript: ENST00000444712
  gene symbol: SNX13
  hgvsc: ENST00000444712.1:c.*1058C>T
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000398789
  ensembl transcript: ENST00000428135
  gene symbol: SNX13
  hgvsc: ENST00000428135.3:c.1293C>T
  hgvsp: ENST00000428135.3:c.1293C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21335
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48005
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr431Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD

7-17879520-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17879520
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 17879520
    reference: chr 7
allele count: 2
allele frequency: 1.669031127430527e-5
allele num: 119830
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000386705
  ensembl transcript: ENST00000409389
  gene symbol: SNX13
  hgvsc: ENST00000409389.1:c.1269T>C
  hgvsp: ENST00000409389.1:c.1269T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000387053
  ensembl transcript: ENST00000409076
  gene symbol: SNX13
  hgvsc: ENST00000409076.2:c.*967T>C
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000398789
  ensembl transcript: ENST00000428135
  gene symbol: SNX13
  hgvsc: ENST00000428135.3:c.1269T>C
  hgvsp: ENST00000428135.3:c.1269T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000397768
  ensembl transcript: ENST00000444712
  gene symbol: SNX13
  hgvsc: ENST00000444712.1:c.*1034T>C
  variant of: http://identifiers.org/hgnc/21335
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3730
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg423Arg
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-17879521-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17879521
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 17879521
    reference: chr 7
allele count: 1
allele frequency: 8.343206127250579e-6
allele num: 119858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000387053
  ensembl transcript: ENST00000409076
  gene symbol: SNX13
  hgvsc: ENST00000409076.2:c.*966G>T
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000386705
  ensembl transcript: ENST00000409389
  gene symbol: SNX13
  hgvsc: ENST00000409389.1:c.1268G>T
  hgvsp: ENSP00000386705.1:p.Arg423Leu
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000397768
  ensembl transcript: ENST00000444712
  gene symbol: SNX13
  hgvsc: ENST00000444712.1:c.*1033G>T
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000398789
  ensembl transcript: ENST00000428135
  gene symbol: SNX13
  hgvsc: ENST00000428135.3:c.1268G>T
  hgvsp: ENSP00000398789.2:p.Arg423Leu
  variant of: http://identifiers.org/hgnc/21335
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3732
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg423Leu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

7-17879521-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17879521
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 17879521
    reference: chr 7
allele count: 2
allele frequency: 1.668641225450116e-5
allele num: 119858
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000398789
  ensembl transcript: ENST00000428135
  gene symbol: SNX13
  hgvsc: ENST00000428135.3:c.1268G>A
  hgvsp: ENSP00000398789.2:p.Arg423His
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000397768
  ensembl transcript: ENST00000444712
  gene symbol: SNX13
  hgvsc: ENST00000444712.1:c.*1033G>A
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000387053
  ensembl transcript: ENST00000409076
  gene symbol: SNX13
  hgvsc: ENST00000409076.2:c.*966G>A
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000386705
  ensembl transcript: ENST00000409389
  gene symbol: SNX13
  hgvsc: ENST00000409389.1:c.1268G>A
  hgvsp: ENSP00000386705.1:p.Arg423His
  variant of: http://identifiers.org/hgnc/21335
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg423His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

7-17879528-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17879528
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 17879528
    reference: chr 7
allele count: 1
allele frequency: 8.339309838717748e-6
allele num: 119914
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000398789
  ensembl transcript: ENST00000428135
  gene symbol: SNX13
  hgvsc: ENST00000428135.3:c.1261T>C
  hgvsp: ENST00000428135.3:c.1261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000397768
  ensembl transcript: ENST00000444712
  gene symbol: SNX13
  hgvsc: ENST00000444712.1:c.*1026T>C
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000387053
  ensembl transcript: ENST00000409076
  gene symbol: SNX13
  hgvsc: ENST00000409076.2:c.*959T>C
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000386705
  ensembl transcript: ENST00000409389
  gene symbol: SNX13
  hgvsc: ENST00000409389.1:c.1261T>C
  hgvsp: ENST00000409389.1:c.1261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21335
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48028
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4014
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu421Leu
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

7-17879531-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17879531
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 17879531
    reference: chr 7
allele count: 3
allele frequency: 2.501751225858101e-5
allele num: 119916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000387053
  ensembl transcript: ENST00000409076
  gene symbol: SNX13
  hgvsc: ENST00000409076.2:c.*956T>A
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000386705
  ensembl transcript: ENST00000409389
  gene symbol: SNX13
  hgvsc: ENST00000409389.1:c.1258T>A
  hgvsp: ENSP00000386705.1:p.Leu420Ile
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000397768
  ensembl transcript: ENST00000444712
  gene symbol: SNX13
  hgvsc: ENST00000444712.1:c.*1023T>A
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000398789
  ensembl transcript: ENST00000428135
  gene symbol: SNX13
  hgvsc: ENST00000428135.3:c.1258T>A
  hgvsp: ENSP00000398789.2:p.Leu420Ile
  variant of: http://identifiers.org/hgnc/21335
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu420Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum

7-17879532-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17879532
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 17879532
    reference: chr 7
allele count: 2
allele frequency: 1.66761164659974e-5
allele num: 119932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000386705
  ensembl transcript: ENST00000409389
  gene symbol: SNX13
  hgvsc: ENST00000409389.1:c.1257T>C
  hgvsp: ENST00000409389.1:c.1257T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000398789
  ensembl transcript: ENST00000428135
  gene symbol: SNX13
  hgvsc: ENST00000428135.3:c.1257T>C
  hgvsp: ENST00000428135.3:c.1257T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000397768
  ensembl transcript: ENST00000444712
  gene symbol: SNX13
  hgvsc: ENST00000444712.1:c.*1022T>C
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000387053
  ensembl transcript: ENST00000409076
  gene symbol: SNX13
  hgvsc: ENST00000409076.2:c.*955T>C
  variant of: http://identifiers.org/hgnc/21335
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47887
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val419Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

7-17879535-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17879535
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 17879535
    reference: chr 7
allele count: 70
allele frequency: 5.836154141168231e-4
allele num: 119942
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000386705
  ensembl transcript: ENST00000409389
  gene symbol: SNX13
  hgvsc: ENST00000409389.1:c.1254A>G
  hgvsp: ENST00000409389.1:c.1254A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000397768
  ensembl transcript: ENST00000444712
  gene symbol: SNX13
  hgvsc: ENST00000444712.1:c.*1019A>G
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000387053
  ensembl transcript: ENST00000409076
  gene symbol: SNX13
  hgvsc: ENST00000409076.2:c.*952A>G
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000398789
  ensembl transcript: ENST00000428135
  gene symbol: SNX13
  hgvsc: ENST00000428135.3:c.1254A>G
  hgvsp: ENST00000428135.3:c.1254A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21335
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39748
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12406
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3789
  bin: 9.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 4000
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47646
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu418Glu
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

7-17879536-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17879536
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 17879536
    reference: chr 7
allele count: 2
allele frequency: 1.667361400583577e-5
allele num: 119950
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000398789
  ensembl transcript: ENST00000428135
  gene symbol: SNX13
  hgvsc: ENST00000428135.3:c.1253A>G
  hgvsp: ENSP00000398789.2:p.Glu418Gly
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000386705
  ensembl transcript: ENST00000409389
  gene symbol: SNX13
  hgvsc: ENST00000409389.1:c.1253A>G
  hgvsp: ENSP00000386705.1:p.Glu418Gly
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000387053
  ensembl transcript: ENST00000409076
  gene symbol: SNX13
  hgvsc: ENST00000409076.2:c.*951A>G
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000397768
  ensembl transcript: ENST00000444712
  gene symbol: SNX13
  hgvsc: ENST00000444712.1:c.*1018A>G
  variant of: http://identifiers.org/hgnc/21335
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4014
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3730
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu418Gly
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

7-17879549-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17879549
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 17879549
    reference: chr 7
allele count: 1
allele frequency: 8.333611120370679e-6
allele num: 119996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000387053
  ensembl transcript: ENST00000409076
  gene symbol: SNX13
  hgvsc: ENST00000409076.2:c.*938C>G
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000398789
  ensembl transcript: ENST00000428135
  gene symbol: SNX13
  hgvsc: ENST00000428135.3:c.1240C>G
  hgvsp: ENSP00000398789.2:p.Gln414Glu
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000386705
  ensembl transcript: ENST00000409389
  gene symbol: SNX13
  hgvsc: ENST00000409389.1:c.1240C>G
  hgvsp: ENSP00000386705.1:p.Gln414Glu
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000397768
  ensembl transcript: ENST00000444712
  gene symbol: SNX13
  hgvsc: ENST00000444712.1:c.*1005C>G
  variant of: http://identifiers.org/hgnc/21335
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln414Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

7-17879550-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17879550
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 17879550
    reference: chr 7
allele count: 5
allele frequency: 4.16680556018534e-5
allele num: 119996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000387053
  ensembl transcript: ENST00000409076
  gene symbol: SNX13
  hgvsc: ENST00000409076.2:c.*937C>T
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000386705
  ensembl transcript: ENST00000409389
  gene symbol: SNX13
  hgvsc: ENST00000409389.1:c.1239C>T
  hgvsp: ENST00000409389.1:c.1239C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000397768
  ensembl transcript: ENST00000444712
  gene symbol: SNX13
  hgvsc: ENST00000444712.1:c.*1004C>T
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000398789
  ensembl transcript: ENST00000428135
  gene symbol: SNX13
  hgvsc: ENST00000428135.3:c.1239C>T
  hgvsp: ENST00000428135.3:c.1239C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21335
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12580
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4043
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3738
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala413Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

7-17879551-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17879551
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 17879551
    reference: chr 7
allele count: 1
allele frequency: 8.333611120370679e-6
allele num: 119996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000386705
  ensembl transcript: ENST00000409389
  gene symbol: SNX13
  hgvsc: ENST00000409389.1:c.1238C>T
  hgvsp: ENSP00000386705.1:p.Ala413Val
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000387053
  ensembl transcript: ENST00000409076
  gene symbol: SNX13
  hgvsc: ENST00000409076.2:c.*936C>T
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000398789
  ensembl transcript: ENST00000428135
  gene symbol: SNX13
  hgvsc: ENST00000428135.3:c.1238C>T
  hgvsp: ENSP00000398789.2:p.Ala413Val
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000397768
  ensembl transcript: ENST00000444712
  gene symbol: SNX13
  hgvsc: ENST00000444712.1:c.*1003C>T
  variant of: http://identifiers.org/hgnc/21335
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39731
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3734
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala413Val
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

7-17879553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17879553
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 17879553
    reference: chr 7
allele count: 6293
allele frequency: 5.243991866937769e-2
allele num: 120004
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000387053
  ensembl transcript: ENST00000409076
  gene symbol: SNX13
  hgvsc: ENST00000409076.2:c.*934C>T
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000386705
  ensembl transcript: ENST00000409389
  gene symbol: SNX13
  hgvsc: ENST00000409389.1:c.1236C>T
  hgvsp: ENST00000409389.1:c.1236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000398789
  ensembl transcript: ENST00000428135
  gene symbol: SNX13
  hgvsc: ENST00000428135.3:c.1236C>T
  hgvsp: ENST00000428135.3:c.1236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21335
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071189
  ensembl protein: ENSP00000397768
  ensembl transcript: ENST00000444712
  gene symbol: SNX13
  hgvsc: ENST00000444712.1:c.*1001C>T
  variant of: http://identifiers.org/hgnc/21335
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.25e1
  variant carriers: 481
hgvs: p.Thr412Thr
num of homozygotes: 258
reference allele: G

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10089
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2550
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3922
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4326
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3198
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.529800514012973e-5
allele num: 65368
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10110
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FS
type: SiteQuality
SIO_000300: 1.3163e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-1

MQRankSum
type: SiteQuality
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QD
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SIO_000300: 1.242e1

MQ
type: SiteQuality
SIO_000300: 5.974e1

ClippingRankSum
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SIO_000300: 9.4e-2

VQSLOD
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.042e0

DP
type: SiteQuality
SIO_000300: 1.815768e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.064382680109092e-5
allele num: 65266
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.722e0

QD
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MQRankSum
type: SiteQuality
SIO_000300: 8.57e-1

InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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DP
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FS
type: SiteQuality
SIO_000300: 5.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.98e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65204
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.289938479857115e-3
allele num: 10078
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.743679163034002e-4
allele num: 11470
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

DP
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SIO_000300: 1.804031e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.479e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.292e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536475938786798e-5
allele num: 65084
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.232e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.006e1

QD
type: SiteQuality
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VQSLOD
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MQRankSum
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DP
type: SiteQuality
SIO_000300: 1.791856e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538272212650751e-5
allele num: 65008
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 1.783115e6

VQSLOD
type: SiteQuality
SIO_000300: 5.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.85e-1

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.483e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.014e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53955106690889e-5
allele num: 64954
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
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DP
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.970089730807577e-5
allele num: 10030
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8588
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64928
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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VQSLOD
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MQRankSum
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InbreedingCoeff
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FS
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QD
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.635352286773795e-5
allele num: 64720
num of homozygotes: 0

FS
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Finnish)
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African
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allele frequency: 9.067096514205118e-4
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European (Non-Finnish)
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allele frequency: 1.551879325863621e-5
allele num: 64438
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Latino
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allele frequency: 8.830801836806782e-5
allele num: 11324
num of homozygotes: 0

East Asian
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ClippingRankSum
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MQRankSum
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QD
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MQ
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FS
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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Latino
type: Population
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allele frequency: 8.857395925597875e-5
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South Asian
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African
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East Asian
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allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.039999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.694e0

DP
type: SiteQuality
SIO_000300: 1.566165e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

GenotypeQuality
all individuals: 5728
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5693
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5198
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4984
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2050
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2247
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4243
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3960
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3255
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565778348416998e-5
allele num: 63866
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.562344e6

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 3.366e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.076e0

VQSLOD
type: SiteQuality
SIO_000300: 2.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.728e1

GenotypeQuality
all individuals: 599
bin: 8.25e1
variant carriers: 16

GenotypeQuality
all individuals: 861
bin: 6.25e1
variant carriers: 25

GenotypeQuality
all individuals: 12023
bin: 2.25e1
variant carriers: 17

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 573
bin: 9.25e1
variant carriers: 21

GenotypeQuality
all individuals: 25383
bin: 7.5e0
variant carriers: 9

GenotypeQuality
all individuals: 2552
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 2.75e1
variant carriers: 21

GenotypeQuality
all individuals: 6157
bin: 9.75e1
variant carriers: 271

GenotypeQuality
all individuals: 638
bin: 6.75e1
variant carriers: 11

GenotypeQuality
all individuals: 409
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 8.75e1
variant carriers: 25

South Asian
type: Population
allele count: 35
allele frequency: 4.046242774566474e-3
allele num: 8650
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.040816326530612e-3
allele num: 490
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 9.708737864077669e-4
allele num: 1030
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 2.447980416156671e-3
allele num: 3268
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 5.592841163310962e-3
allele num: 894
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 199
allele frequency: 1.519780051932183e-2
allele num: 13094
num of homozygotes: 1

Other
type: Population
allele count: 2
allele frequency: 8.064516129032258e-3
allele num: 248
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.99e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.31187e5

VQSLOD
type: SiteQuality
SIO_000300: 5.61e0

QD
type: SiteQuality
SIO_000300: 1.367e1

GenotypeQuality
all individuals: 26850
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 604
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2333
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5956
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12554
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.665267086540705e-4
allele num: 8574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 972
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.21012e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.186e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.53e-2

QD
type: SiteQuality
SIO_000300: 1.34e1

FS
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.474e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

GenotypeQuality
all individuals: 2323
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2583
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27516
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.17343346632246e-4
allele num: 8522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.503e0

DP
type: SiteQuality
SIO_000300: 7.15171e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.256e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.736e0

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.08e-1

QD
type: SiteQuality
SIO_000300: 8.35e0

GenotypeQuality
all individuals: 2178
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9431
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2467
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 5.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.07e-2

FS
type: SiteQuality
SIO_000300: 6.154e0

VQSLOD
type: SiteQuality
SIO_000300: -1.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 6.93137e5

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9797
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.208103130755064e-5
allele num: 10860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.02e-2

FS
type: SiteQuality
SIO_000300: 3.334e0

VQSLOD
type: SiteQuality
SIO_000300: -1.492e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.132e0

DP
type: SiteQuality
SIO_000300: 6.93208e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

QD
type: SiteQuality
SIO_000300: 8.59e0

MQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5963
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1970
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8415
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2320
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.3178500331785e-4
allele num: 3014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.613e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.377e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

DP
type: SiteQuality
SIO_000300: 6.79774e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.274e0

FS
type: SiteQuality
SIO_000300: 6.511e0

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

QD
type: SiteQuality
SIO_000300: 8.890000000000001e0

GenotypeQuality
all individuals: 2167
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 643
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1970
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 2.962085308056872e-4
allele num: 10128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

FS
type: SiteQuality
SIO_000300: 5.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.39e-1

DP
type: SiteQuality
SIO_000300: 6.77821e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.135e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

GenotypeQuality
all individuals: 1115
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5963
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 596
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2002
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7648
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2982
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.587155963302753e-3
allele num: 218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 1.224889759921607e-3
allele num: 8164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.419999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

QD
type: SiteQuality
SIO_000300: 1.345e1

DP
type: SiteQuality
SIO_000300: 6.74266e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.774e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
all individuals: 665
bin: 1.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7936
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.218278615794144e-4
allele num: 9016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 6.13697e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 7.8e0

VQSLOD
type: SiteQuality
SIO_000300: -1.057e0

MQRankSum
type: SiteQuality
SIO_000300: -8.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.630000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.082e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 15

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.051780752715333e-4
allele num: 7918
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.352569882777277e-3
allele num: 8872
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

DP
type: SiteQuality
SIO_000300: 5.78215e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.65e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.66e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

QD
type: SiteQuality
SIO_000300: 1.403e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.8e-2

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8830
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.01e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

FS
type: SiteQuality
SIO_000300: 1.8842e1

VQSLOD
type: SiteQuality
SIO_000300: -1.983e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

DP
type: SiteQuality
SIO_000300: 5.71595e5

QD
type: SiteQuality
SIO_000300: 2.176e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.713e0

GenotypeQuality
all individuals: 595
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 5958
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.133529811834051e-4
allele num: 8822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2812
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.522e-1

FS
type: SiteQuality
SIO_000300: 7.55e-1

DP
type: SiteQuality
SIO_000300: 5.6327e5

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

QD
type: SiteQuality
SIO_000300: 1.488e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.58e-1

GenotypeQuality
all individuals: 589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8244
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GenotypeQuality
all individuals: 262
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
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variant carriers: 0

GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 564
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 340
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GenotypeQuality
all individuals: 5959
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
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variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.054334091483447e-4
allele num: 7914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8812
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.110000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.63001e5

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

QD
type: SiteQuality
SIO_000300: 1.201e1

VQSLOD
type: SiteQuality
SIO_000300: -1.051e0

GenotypeQuality
all individuals: 847
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 582
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 625
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variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8816
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.62853e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.25e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.058e1

MQ
type: SiteQuality
SIO_000300: 5.177e1

VQSLOD
type: SiteQuality
SIO_000300: 7.48e-1

GenotypeQuality
all individuals: 842
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 30

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28277
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 4.580292528016123e-4
allele num: 65498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

DP
type: SiteQuality
SIO_000300: 1.69098e6

MQRankSum
type: SiteQuality
SIO_000300: -1.72e0

QD
type: SiteQuality
SIO_000300: 1.342e1

MQ
type: SiteQuality
SIO_000300: 5.419e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1818
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GenotypeQuality
all individuals: 1379
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.832841691248771e-5
allele num: 10170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.16e-1

FS
type: SiteQuality
SIO_000300: 3.064e0

DP
type: SiteQuality
SIO_000300: 1.692474e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.258e1

VQSLOD
type: SiteQuality
SIO_000300: 7.96e-1

GenotypeQuality
all individuals: 860
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 451
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1045
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GenotypeQuality
all individuals: 576
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.08198515995621e-5
allele num: 16442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.86e0

MQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e0

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.652e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.700226e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2687
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variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551060925673161e-5
allele num: 64472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.326e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e0

FS
type: SiteQuality
SIO_000300: 6.2911e1

VQSLOD
type: SiteQuality
SIO_000300: -2.299e1

DP
type: SiteQuality
SIO_000300: 1.685867e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

GenotypeQuality
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bin: 2.25e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 2
allele frequency: 2.340823970037453e-4
allele num: 8544
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.045066991473812e-4
allele num: 9852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.171485295942425e-4
allele num: 64472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.079766536964981e-5
allele num: 16448
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.165501165501166e-3
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.65016501650165e-4
allele num: 6060
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.38e0

FS
type: SiteQuality
SIO_000300: 6.2911e1

VQSLOD
type: SiteQuality
SIO_000300: -2.299e1

DP
type: SiteQuality
SIO_000300: 1.685867e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.326e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
SIO_000300: 7.7e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2840
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65434
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.025e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.687566e6

QD
type: SiteQuality
SIO_000300: 6.34e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1050
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527837193668643e-5
allele num: 65452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 1.985e0

MQRankSum
type: SiteQuality
SIO_000300: 5.95e-1

DP
type: SiteQuality
SIO_000300: 1.690035e6

QD
type: SiteQuality
SIO_000300: 1.676e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 174
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1058
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GenotypeQuality
all individuals: 858
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526251526251526e-5
allele num: 65520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.697624e6

QD
type: SiteQuality
SIO_000300: 1.274e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 3.796e0

MQRankSum
type: SiteQuality
SIO_000300: 6.95e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.311e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.23e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 8961
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.540357362908195e-4
allele num: 6492
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-1

DP
type: SiteQuality
SIO_000300: 1.706612e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.52e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524297298945186e-5
allele num: 65604
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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allele num: 8620
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.486000000000001e0

DP
type: SiteQuality
SIO_000300: 1.707536e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

VQSLOD
type: SiteQuality
SIO_000300: -1.835e-1

QD
type: SiteQuality
SIO_000300: 1.051e1

MQRankSum
type: SiteQuality
SIO_000300: -7.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 854
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524204365321302e-5
allele num: 65608
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.75800156128025e-5
allele num: 10248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.161e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.711246e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.251e1

FS
type: SiteQuality
SIO_000300: 1.617e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.752291788570315e-5
allele num: 10254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-1

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.927e1

DP
type: SiteQuality
SIO_000300: 1.712416e6

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

GenotypeQuality
all individuals: 9020
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 872
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.712319219376198e-5
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

FS
type: SiteQuality
SIO_000300: 8.161e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.068e1

QD
type: SiteQuality
SIO_000300: 1.545e1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

DP
type: SiteQuality
SIO_000300: 1.713534e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521097624045511e-5
allele num: 65742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 1.716053e6

FS
type: SiteQuality
SIO_000300: 2.105e0

QD
type: SiteQuality
SIO_000300: 1.766e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.467e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.03e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.129890453834116e-4
allele num: 6390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519941634241245e-5
allele num: 65792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.723369e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -7.18e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.336e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e-1

FS
type: SiteQuality
SIO_000300: 9.601000000000001e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516530178950561e-5
allele num: 65940
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

QD
type: SiteQuality
SIO_000300: 7.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

DP
type: SiteQuality
SIO_000300: 1.724525e6

VQSLOD
type: SiteQuality
SIO_000300: -1.101e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.581e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 6.623e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2890
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4692
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36361
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515151515151515e-5
allele num: 66000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.570000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.644e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.278e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

QD
type: SiteQuality
SIO_000300: 1.417e1

DP
type: SiteQuality
SIO_000300: 1.726167e6

FS
type: SiteQuality
SIO_000300: 1.305e0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4690
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66040
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.154e0

QD
type: SiteQuality
SIO_000300: 9.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 3.789e0

VQSLOD
type: SiteQuality
SIO_000300: -7.340000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.726909e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514142087093453e-5
allele num: 66044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQ
type: SiteQuality
SIO_000300: 5.824e1

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.441e0

FS
type: SiteQuality
SIO_000300: 7.843e0

DP
type: SiteQuality
SIO_000300: 1.72687e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-1

QD
type: SiteQuality
SIO_000300: 1.215e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66070
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

DP
type: SiteQuality
SIO_000300: 1.727439e6

FS
type: SiteQuality
SIO_000300: 7.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.163e0

QD
type: SiteQuality
SIO_000300: 1.142e1

GenotypeQuality
all individuals: 81
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 375
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 870
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2935
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.54063871651279e-5
allele num: 66070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

QD
type: SiteQuality
SIO_000300: 1.142e1

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.727439e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.163e0

GenotypeQuality
all individuals: 77
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2939
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4687
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2897
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9125
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513592056668887e-5
allele num: 66068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.061e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 9.93e0

VQSLOD
type: SiteQuality
SIO_000300: -1.462e0

MQRankSum
type: SiteQuality
SIO_000300: -7.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

DP
type: SiteQuality
SIO_000300: 1.727622e6

MQ
type: SiteQuality
SIO_000300: 5.867e1

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4687
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9125
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2897
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66068
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.75e-1

FS
type: SiteQuality
SIO_000300: 3.061e0

MQ
type: SiteQuality
SIO_000300: 5.867e1

VQSLOD
type: SiteQuality
SIO_000300: -1.462e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.727622e6

QD
type: SiteQuality
SIO_000300: 9.93e0

GenotypeQuality
all individuals: 2938
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2891
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36536
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variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4698
bin: 9.75e1
variant carriers: 24

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513271390091099e-5
allele num: 66082
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 23
allele frequency: 1.393432691142615e-3
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.013e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

MQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.95e-2

DP
type: SiteQuality
SIO_000300: 1.729595e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9120
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2939
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 395
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variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1799
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variant carriers: 0

GenotypeQuality
all individuals: 2891
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36553
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51336299524804e-5
allele num: 66078
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-1

DP
type: SiteQuality
SIO_000300: 1.727559e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.215e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.411e-1

MQ
type: SiteQuality
SIO_000300: 5.893e1

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 871
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variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 425
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variant carriers: 0

GenotypeQuality
all individuals: 4681
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1072
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36497
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513134003147319e-5
allele num: 66088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

FS
type: SiteQuality
SIO_000300: 6.426e0

VQSLOD
type: SiteQuality
SIO_000300: -2.324e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.127e0

DP
type: SiteQuality
SIO_000300: 1.727275e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.104e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

GenotypeQuality
all individuals: 97
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
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variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9091
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variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4681
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66084
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.674922600619196e-5
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.103e-1

FS
type: SiteQuality
SIO_000300: 1.051e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.05e-1

MQ
type: SiteQuality
SIO_000300: 5.669e1

DP
type: SiteQuality
SIO_000300: 1.727337e6

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.07e-1

QD
type: SiteQuality
SIO_000300: 9.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.092e0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36498
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2869
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.158e0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: -3.92e-2

FS
type: SiteQuality
SIO_000300: 2.849e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

DP
type: SiteQuality
SIO_000300: 1.727147e6

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2861
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2929
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9069
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 866
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variant carriers: 0

GenotypeQuality
all individuals: 1796
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66064
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

MQ
type: SiteQuality
SIO_000300: 5.99e1

QD
type: SiteQuality
SIO_000300: 1.127e1

DP
type: SiteQuality
SIO_000300: 1.725596e6

FS
type: SiteQuality
SIO_000300: 2.574e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.208e0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.59e-1

GenotypeQuality
all individuals: 9050
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2864
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2924
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66062
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.671179883945841e-5
allele num: 10340
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
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SIO_000300: -1.336e0

InbreedingCoeff
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SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

MQ
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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SIO_000300: 1.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.379e0

FS
type: SiteQuality
SIO_000300: 1.109e0

DP
type: SiteQuality
SIO_000300: 1.725222e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514004542013626e-5
allele num: 66050
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 1.731065e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.342e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.188e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.028009084027252e-5
allele num: 66050
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.188e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.342e1

DP
type: SiteQuality
SIO_000300: 1.731065e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 214

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732801940738174e-4
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.064281382656155e-4
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.869969040247678e-4
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 187
allele frequency: 2.831188493565481e-3
allele num: 66050
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.029928510844541e-3
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

QD
type: SiteQuality
SIO_000300: 1.342e1

DP
type: SiteQuality
SIO_000300: 1.731065e6

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.188e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2841
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 60
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1063
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GenotypeQuality
all individuals: 9005
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.38e1

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.72526e6

GenotypeQuality
all individuals: 3729
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 3982
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variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020144362900547e-5
allele num: 66222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.267e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 1.16e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.03e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 1.579649e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.02e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.126126126126126e-3
allele num: 888
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.527183872938302e-4
allele num: 6548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 1.584136e6

QD
type: SiteQuality
SIO_000300: 1.406e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.4e0

FS
type: SiteQuality
SIO_000300: 1.805e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1005
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507204437209863e-5
allele num: 66348
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.24e-1

QD
type: SiteQuality
SIO_000300: 1.256e1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.584663e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014408874419726e-5
allele num: 66348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.71e-1

DP
type: SiteQuality
SIO_000300: 1.584663e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.074596039363382e-5
allele num: 16462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.755e0

ReadPosRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 1.585817e6

GenotypeQuality
all individuals: 244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.25e1
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GenotypeQuality
all individuals: 652
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GenotypeQuality
all individuals: 1060
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.507131166705635e-4
allele num: 8554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.977e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.22e1

DP
type: SiteQuality
SIO_000300: 1.586197e6

FS
type: SiteQuality
SIO_000300: 4.057e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.97e-1

GenotypeQuality
all individuals: 334
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506160195198361e-5
allele num: 66394
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023960679909891e-4
allele num: 9766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.506e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

DP
type: SiteQuality
SIO_000300: 1.586212e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

GenotypeQuality
all individuals: 333
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 117
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 55
allele frequency: 5.628325828898895e-3
allele num: 9772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.305978068623983e-4
allele num: 11308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012501882813677e-5
allele num: 66390
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.251700680272109e-4
allele num: 16464
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

FS
type: SiteQuality
SIO_000300: 5.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 1.589251e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

QD
type: SiteQuality
SIO_000300: 1.416e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-2

GenotypeQuality
all individuals: 657
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.023331968890708e-4
allele num: 9772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506250941406838e-5
allele num: 66390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.39e-1

QD
type: SiteQuality
SIO_000300: 1.447e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.580000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 6.946e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

DP
type: SiteQuality
SIO_000300: 1.58667e6

GenotypeQuality
all individuals: 4039
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3736
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505389293671343e-5
allele num: 66428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 1.589252e6

VQSLOD
type: SiteQuality
SIO_000300: 3.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.376e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

FS
type: SiteQuality
SIO_000300: 1.439e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.499e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.76e-1

GenotypeQuality
all individuals: 250
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.215066828675577e-4
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.502218071445249e-4
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66430
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.206e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.48e-1

DP
type: SiteQuality
SIO_000300: 1.58922e6

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

QD
type: SiteQuality
SIO_000300: 1.467e1

GenotypeQuality
all individuals: 1072
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48126
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4047
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505389293671343e-5
allele num: 66428
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.205e0

MQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

FS
type: SiteQuality
SIO_000300: 1.871e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.69e-1

DP
type: SiteQuality
SIO_000300: 1.589281e6

QD
type: SiteQuality
SIO_000300: 4.76e0