5-34821908-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34821908
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34821908
    reference: chr 5
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1042G>A
  hgvsp: ENSP00000423854.1:p.Val348Ile
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1075G>A
  hgvsp: ENSP00000427123.1:p.Val359Ile
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1045G>A
  hgvsp: ENSP00000380591.1:p.Val349Ile
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1066G>A
  hgvsp: ENSP00000422942.1:p.Val356Ile
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.979G>A
  hgvsp: ENSP00000422377.1:p.Val327Ile
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423965
  ensembl transcript: ENST00000508777
  gene symbol: RAI14
  hgvsc: ENST00000508777.1:c.*849G>A
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1066G>A
  hgvsp: ENSP00000265109.3:p.Val356Ile
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1066G>A
  hgvsp: ENSP00000388725.2:p.Val356Ile
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val359Ile
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

5-34821937-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34821937
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34821937
    reference: chr 5
allele count: 1
allele frequency: 8.256683785524381e-6
allele num: 121114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1095G>A
  hgvsp: ENST00000265109.3:c.1095G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1095G>A
  hgvsp: ENST00000428746.2:c.1095G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1095G>A
  hgvsp: ENST00000503673.1:c.1095G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1071G>A
  hgvsp: ENST00000506376.1:c.1071G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1008G>A
  hgvsp: ENST00000512629.1:c.1008G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1104G>A
  hgvsp: ENST00000515799.1:c.1104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423965
  ensembl transcript: ENST00000508777
  gene symbol: RAI14
  hgvsc: ENST00000508777.1:c.*878G>A
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1074G>A
  hgvsp: ENST00000397449.1:c.1074G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7290
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu368Glu
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

5-34821944-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34821944
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34821944
    reference: chr 5
allele count: 1
allele frequency: 8.261185645363822e-6
allele num: 121048
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1078G>C
  hgvsp: ENSP00000423854.1:p.Asp360His
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1102G>C
  hgvsp: ENSP00000388725.2:p.Asp368His
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1081G>C
  hgvsp: ENSP00000380591.1:p.Asp361His
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1102G>C
  hgvsp: ENSP00000265109.3:p.Asp368His
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1102G>C
  hgvsp: ENSP00000422942.1:p.Asp368His
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1111G>C
  hgvsp: ENSP00000427123.1:p.Asp371His
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1015G>C
  hgvsp: ENSP00000422377.1:p.Asp339His
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9352
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3557
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp371His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/5-34821954-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34821954
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34821954
    reference: chr 5
allele count: 3
allele frequency: 2.482416218452627e-5
allele num: 120850
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1091A>C
  hgvsp: ENSP00000380591.1:p.Gln364Pro
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1112A>C
  hgvsp: ENSP00000388725.2:p.Gln371Pro
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1112A>C
  hgvsp: ENSP00000265109.3:p.Gln371Pro
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1025A>C
  hgvsp: ENSP00000422377.1:p.Gln342Pro
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1112A>C
  hgvsp: ENSP00000422942.1:p.Gln371Pro
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1121A>C
  hgvsp: ENSP00000427123.1:p.Gln374Pro
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1088A>C
  hgvsp: ENSP00000423854.1:p.Gln363Pro
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9014
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln374Pro
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-34821960-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34821960
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34821960
    reference: chr 5
allele count: 6
allele frequency: 4.968450340338848e-5
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1122+5A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1026+5A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1089+5A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1113+5A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1113+5A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1092+5A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1113+5A>G
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33399
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8931
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1122+5A>G
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-34821965-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34821965
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34821965
    reference: chr 5
allele count: 11
allele frequency: 9.120305115662051e-5
allele num: 120610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1092+10T>C
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1089+10T>C
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1113+10T>C
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1122+10T>C
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1026+10T>C
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1113+10T>C
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1113+10T>C
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7279
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7227
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33397
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 8470
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-34821974-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34821974
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34821974
    reference: chr 5
allele count: 1
allele frequency: 8.304268393954492e-6
allele num: 120420
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1122+19A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1113+19A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1089+19A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1113+19A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1092+19A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1113+19A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1026+19A>G
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3270
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7822
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

5-34821978-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34821978
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34821978
    reference: chr 5
allele count: 1
allele frequency: 8.308960382876895e-6
allele num: 120352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1092+23T>C
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1026+23T>C
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1113+23T>C
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1113+23T>C
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1113+23T>C
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1122+23T>C
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1089+23T>C
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33389
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ

5-34821997-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34821997
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34821997
    reference: chr 5
allele count: 1
allele frequency: 8.330834083108401e-6
allele num: 120036
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1113+42A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1113+42A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1026+42A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1089+42A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1113+42A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1122+42A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1092+42A>G
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5751
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2976
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
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genotype quality: GenotypeQuality
  all individuals: 146
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genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33374
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

5-34821999-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34821999
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34821999
    reference: chr 5
allele count: 1
allele frequency: 8.3365290027844e-6
allele num: 119954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1089+44G>T
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1113+44G>T
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1122+44G>T
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1113+44G>T
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1092+44G>T
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1026+44G>T
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1113+44G>T
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3314
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3044
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genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 5456
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD

5-34823015-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823015
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823015
    reference: chr 5
allele count: 1
allele frequency: 8.882099017639849e-6
allele num: 112586
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1123-46A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1027-46A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1090-46A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1114-46A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1114-46A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1093-46A>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1114-46A>G
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18245
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 491
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4172
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 20431
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

5-34823020-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823020
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823020
    reference: chr 5
allele count: 1
allele frequency: 8.875477056891809e-6
allele num: 112670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1114-41C>T
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1114-41C>T
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1123-41C>T
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1027-41C>T
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1093-41C>T
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1090-41C>T
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1114-41C>T
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7526
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3032
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4104
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

5-34823033-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823033
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823032
    reference: chr 5
allele count: 1
allele frequency: 8.83173773271629e-6
allele num: 113228
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1123-27delC
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1114-27delC
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1090-27delC
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1114-27delC
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1114-27delC
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1027-27delC
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1093-27delC
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3372
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: TC
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

5-34823038-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823038
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823038
    reference: chr 5
allele count: 1
allele frequency: 8.802971883307805e-6
allele num: 113598
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1093-23T>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1114-23T>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1114-23T>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1123-23T>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1090-23T>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1114-23T>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1027-23T>G
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3466
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24780
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3104
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/5-34823043-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823043
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823043
    reference: chr 5
allele count: 1
allele frequency: 8.77778167901408e-6
allele num: 113924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1090-18C>A
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1123-18C>A
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1114-18C>A
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1114-18C>A
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1027-18C>A
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1114-18C>A
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1093-18C>A
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7458
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

5-34823047-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823047
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823048
    reference: chr 5
allele count: 2
allele frequency: 1.759912708329667e-5
allele num: 113642
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1093-6dupT
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1123-6dupT
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1114-6dupT
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1090-6dupT
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1114-6dupT
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1027-6dupT
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1114-6dupT
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13470
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3062
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7698
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3486
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

5-34823047-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823047
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823046
    reference: chr 5
allele count: 6
allele frequency: 5.279738124989001e-5
allele num: 113642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1114-6delT
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1123-6delT
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1027-6delT
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1114-6delT
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1093-6delT
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1114-6delT
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1090-6delT
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13470
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11008
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19322
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3062
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3486
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24594
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7421
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: CT
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

5-34823048-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823048
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823048
    reference: chr 5
allele count: 1
allele frequency: 8.762552356250328e-6
allele num: 114122
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1090-13T>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1093-13T>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1123-13T>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1114-13T>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1114-13T>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1027-13T>G
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1114-13T>G
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2998
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7430
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3516
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7749
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-34823060-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823060
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823060
    reference: chr 5
allele count: 1
allele frequency: 8.540438978563499e-6
allele num: 117090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1114-1G>A
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1114-1G>A
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1027-1G>A
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1123-1G>A
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1114-1G>A
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1093-1G>A
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1090-1G>A
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26819
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7464
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4181
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3600
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1123-1G>A
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

5-34823067-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823067
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823067
    reference: chr 5
allele count: 1
allele frequency: 8.448371998715848e-6
allele num: 118366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1099T>G
  hgvsp: ENSP00000380591.1:p.Ser367Ala
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1129T>G
  hgvsp: ENSP00000427123.1:p.Ser377Ala
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1120T>G
  hgvsp: ENSP00000388725.2:p.Ser374Ala
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1096T>G
  hgvsp: ENSP00000423854.1:p.Ser366Ala
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1033T>G
  hgvsp: ENSP00000422377.1:p.Ser345Ala
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1120T>G
  hgvsp: ENSP00000265109.3:p.Ser374Ala
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1120T>G
  hgvsp: ENSP00000422942.1:p.Ser374Ala
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8105
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7464
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser377Ala
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-34823076-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823076
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823076
    reference: chr 5
allele count: 1
allele frequency: 8.360225391676559e-6
allele num: 119614
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1042G>A
  hgvsp: ENSP00000422377.1:p.Glu348Lys
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1138G>A
  hgvsp: ENSP00000427123.1:p.Glu380Lys
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1129G>A
  hgvsp: ENSP00000388725.2:p.Glu377Lys
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1105G>A
  hgvsp: ENSP00000423854.1:p.Glu369Lys
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1129G>A
  hgvsp: ENSP00000422942.1:p.Glu377Lys
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1129G>A
  hgvsp: ENSP00000265109.3:p.Glu377Lys
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1108G>A
  hgvsp: ENSP00000380591.1:p.Glu370Lys
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5097
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3670
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu380Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

5-34823080-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823080
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823080
    reference: chr 5
allele count: 1
allele frequency: 8.344180768332166e-6
allele num: 119844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1133C>T
  hgvsp: ENSP00000388725.2:p.Ala378Val
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1046C>T
  hgvsp: ENSP00000422377.1:p.Ala349Val
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1112C>T
  hgvsp: ENSP00000380591.1:p.Ala371Val
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1133C>T
  hgvsp: ENSP00000265109.3:p.Ala378Val
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1142C>T
  hgvsp: ENSP00000427123.1:p.Ala381Val
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1109C>T
  hgvsp: ENSP00000423854.1:p.Ala370Val
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1133C>T
  hgvsp: ENSP00000422942.1:p.Ala378Val
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28251
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala381Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD

5-34823081-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823081
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823081
    reference: chr 5
allele count: 221
allele frequency: 1.83970431539691e-3
allele num: 120128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1110G>A
  hgvsp: ENST00000506376.1:c.1110G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1143G>A
  hgvsp: ENST00000515799.1:c.1143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1113G>A
  hgvsp: ENST00000397449.1:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1047G>A
  hgvsp: ENST00000512629.1:c.1047G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1134G>A
  hgvsp: ENST00000265109.3:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1134G>A
  hgvsp: ENST00000503673.1:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1134G>A
  hgvsp: ENST00000428746.2:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 16191
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 11262
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3662
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4241
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8222
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala381Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

5-34823089-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823089
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823089
    reference: chr 5
allele count: 1
allele frequency: 8.295175525914129e-6
allele num: 120552
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1121A>G
  hgvsp: ENSP00000380591.1:p.Asp374Gly
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1142A>G
  hgvsp: ENSP00000265109.3:p.Asp381Gly
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1118A>G
  hgvsp: ENSP00000423854.1:p.Asp373Gly
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1142A>G
  hgvsp: ENSP00000388725.2:p.Asp381Gly
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1142A>G
  hgvsp: ENSP00000422942.1:p.Asp381Gly
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1151A>G
  hgvsp: ENSP00000427123.1:p.Asp384Gly
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1055A>G
  hgvsp: ENSP00000422377.1:p.Asp352Gly
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11389
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28913
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp384Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/5-34823090-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823090
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823090
    reference: chr 5
allele count: 5
allele frequency: 4.146280786134837e-5
allele num: 120590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1119C>A
  hgvsp: ENSP00000423854.1:p.Asp373Glu
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1143C>A
  hgvsp: ENSP00000388725.2:p.Asp381Glu
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1152C>A
  hgvsp: ENSP00000427123.1:p.Asp384Glu
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1143C>A
  hgvsp: ENSP00000265109.3:p.Asp381Glu
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1122C>A
  hgvsp: ENSP00000380591.1:p.Asp374Glu
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1143C>A
  hgvsp: ENSP00000422942.1:p.Asp381Glu
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1056C>A
  hgvsp: ENSP00000422377.1:p.Asp352Glu
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16320
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8320
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3689
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3167
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp384Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

5-34823105-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823105
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823105
    reference: chr 5
allele count: 2
allele frequency: 1.65305650147122e-5
allele num: 120988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1134A>G
  hgvsp: ENST00000506376.1:c.1134A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1071A>G
  hgvsp: ENST00000512629.1:c.1071A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1158A>G
  hgvsp: ENST00000265109.3:c.1158A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1137A>G
  hgvsp: ENST00000397449.1:c.1137A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1167A>G
  hgvsp: ENST00000515799.1:c.1167A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1158A>G
  hgvsp: ENST00000503673.1:c.1158A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1158A>G
  hgvsp: ENST00000428746.2:c.1158A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29190
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7444
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4282
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser389Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/5-34823107-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823107
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823107
    reference: chr 5
allele count: 1
allele frequency: 8.264736024331383e-6
allele num: 120996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1160A>C
  hgvsp: ENSP00000422942.1:p.Tyr387Ser
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1160A>C
  hgvsp: ENSP00000265109.3:p.Tyr387Ser
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1073A>C
  hgvsp: ENSP00000422377.1:p.Tyr358Ser
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1136A>C
  hgvsp: ENSP00000423854.1:p.Tyr379Ser
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1139A>C
  hgvsp: ENSP00000380591.1:p.Tyr380Ser
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1169A>C
  hgvsp: ENSP00000427123.1:p.Tyr390Ser
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1160A>C
  hgvsp: ENSP00000388725.2:p.Tyr387Ser
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8395
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7445
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr390Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

5-34823107-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823107
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823107
    reference: chr 5
allele count: 1
allele frequency: 8.264736024331383e-6
allele num: 120996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1160A>G
  hgvsp: ENSP00000422942.1:p.Tyr387Cys
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1136A>G
  hgvsp: ENSP00000423854.1:p.Tyr379Cys
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1139A>G
  hgvsp: ENSP00000380591.1:p.Tyr380Cys
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1169A>G
  hgvsp: ENSP00000427123.1:p.Tyr390Cys
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1160A>G
  hgvsp: ENSP00000388725.2:p.Tyr387Cys
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1160A>G
  hgvsp: ENSP00000265109.3:p.Tyr387Cys
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1073A>G
  hgvsp: ENSP00000422377.1:p.Tyr358Cys
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8395
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Tyr390Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/5-34823109-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823109
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823109
    reference: chr 5
allele count: 1
allele frequency: 8.26255081468751e-6
allele num: 121028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1162C>A
  hgvsp: ENSP00000388725.2:p.His388Asn
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1162C>A
  hgvsp: ENSP00000422942.1:p.His388Asn
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1075C>A
  hgvsp: ENSP00000422377.1:p.His359Asn
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1141C>A
  hgvsp: ENSP00000380591.1:p.His381Asn
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1171C>A
  hgvsp: ENSP00000427123.1:p.His391Asn
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1162C>A
  hgvsp: ENSP00000265109.3:p.His388Asn
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1138C>A
  hgvsp: ENSP00000423854.1:p.His380Asn
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5130
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3713
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His391Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

5-34823109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823109
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823109
    reference: chr 5
allele count: 1
allele frequency: 8.26255081468751e-6
allele num: 121028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1162C>T
  hgvsp: ENSP00000388725.2:p.His388Tyr
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1138C>T
  hgvsp: ENSP00000423854.1:p.His380Tyr
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1141C>T
  hgvsp: ENSP00000380591.1:p.His381Tyr
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1171C>T
  hgvsp: ENSP00000427123.1:p.His391Tyr
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1162C>T
  hgvsp: ENSP00000422942.1:p.His388Tyr
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1075C>T
  hgvsp: ENSP00000422377.1:p.His359Tyr
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1162C>T
  hgvsp: ENSP00000265109.3:p.His388Tyr
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His391Tyr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/5-34823113-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823113
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823113
    reference: chr 5
allele count: 3
allele frequency: 2.478150968957029e-5
allele num: 121058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1166C>A
  hgvsp: ENSP00000422942.1:p.Ser389Tyr
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1142C>A
  hgvsp: ENSP00000423854.1:p.Ser381Tyr
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1145C>A
  hgvsp: ENSP00000380591.1:p.Ser382Tyr
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1166C>A
  hgvsp: ENSP00000265109.3:p.Ser389Tyr
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1079C>A
  hgvsp: ENSP00000422377.1:p.Ser360Tyr
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1175C>A
  hgvsp: ENSP00000427123.1:p.Ser392Tyr
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1166C>A
  hgvsp: ENSP00000388725.2:p.Ser389Tyr
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3164
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser392Tyr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/5-34823117-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823117
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823117
    reference: chr 5
allele count: 1
allele frequency: 8.256002113536541e-6
allele num: 121124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1146C>A
  hgvsp: ENST00000506376.1:c.1146C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1149C>A
  hgvsp: ENST00000397449.1:c.1149C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1170C>A
  hgvsp: ENST00000503673.1:c.1170C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1083C>A
  hgvsp: ENST00000512629.1:c.1083C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1170C>A
  hgvsp: ENST00000265109.3:c.1170C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1170C>A
  hgvsp: ENST00000428746.2:c.1170C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1179C>A
  hgvsp: ENST00000515799.1:c.1179C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7443
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr393Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

5-34823123-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823123
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823123
    reference: chr 5
allele count: 2
allele frequency: 1.650873311982039e-5
allele num: 121148
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1185T>C
  hgvsp: ENST00000515799.1:c.1185T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1152T>C
  hgvsp: ENST00000506376.1:c.1152T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1176T>C
  hgvsp: ENST00000503673.1:c.1176T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1155T>C
  hgvsp: ENST00000397449.1:c.1155T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1176T>C
  hgvsp: ENST00000265109.3:c.1176T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1089T>C
  hgvsp: ENST00000512629.1:c.1089T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1176T>C
  hgvsp: ENST00000428746.2:c.1176T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4286
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr395Thr
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS

5-34823127-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823127
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823127
    reference: chr 5
allele count: 1
allele frequency: 8.254094030639197e-6
allele num: 121152
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1156T>C
  hgvsp: ENST00000506376.1:c.1156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1180T>C
  hgvsp: ENST00000428746.2:c.1180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1159T>C
  hgvsp: ENST00000397449.1:c.1159T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1180T>C
  hgvsp: ENST00000265109.3:c.1180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1180T>C
  hgvsp: ENST00000503673.1:c.1180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1093T>C
  hgvsp: ENST00000512629.1:c.1093T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1189T>C
  hgvsp: ENST00000515799.1:c.1189T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29335
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4292
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3720
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu397Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff

5-34823128-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823128
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823128
    reference: chr 5
allele count: 2
allele frequency: 1.650818806127839e-5
allele num: 121152
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1181T>G
  hgvsp: ENSP00000422942.1:p.Leu394Trp
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1181T>G
  hgvsp: ENSP00000265109.3:p.Leu394Trp
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1181T>G
  hgvsp: ENSP00000388725.2:p.Leu394Trp
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1160T>G
  hgvsp: ENSP00000380591.1:p.Leu387Trp
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1190T>G
  hgvsp: ENSP00000427123.1:p.Leu397Trp
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1094T>G
  hgvsp: ENSP00000422377.1:p.Leu365Trp
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1157T>G
  hgvsp: ENSP00000423854.1:p.Leu386Trp
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8448
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29337
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu397Trp
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

5-34823131-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34823131
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 34823131
    reference: chr 5
allele count: 3
allele frequency: 2.47614645580904e-5
allele num: 121156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000380591
  ensembl transcript: ENST00000397449
  gene symbol: RAI14
  hgvsc: ENST00000397449.1:c.1163G>A
  hgvsp: ENSP00000380591.1:p.Gly388Asp
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000388725
  ensembl transcript: ENST00000428746
  gene symbol: RAI14
  hgvsc: ENST00000428746.2:c.1184G>A
  hgvsp: ENSP00000388725.2:p.Gly395Asp
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422377
  ensembl transcript: ENST00000512629
  gene symbol: RAI14
  hgvsc: ENST00000512629.1:c.1097G>A
  hgvsp: ENSP00000422377.1:p.Gly366Asp
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000423854
  ensembl transcript: ENST00000506376
  gene symbol: RAI14
  hgvsc: ENST00000506376.1:c.1160G>A
  hgvsp: ENSP00000423854.1:p.Gly387Asp
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000422942
  ensembl transcript: ENST00000503673
  gene symbol: RAI14
  hgvsc: ENST00000503673.1:c.1184G>A
  hgvsp: ENSP00000422942.1:p.Gly395Asp
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000427123
  ensembl transcript: ENST00000515799
  gene symbol: RAI14
  hgvsc: ENST00000515799.1:c.1193G>A
  hgvsp: ENSP00000427123.1:p.Gly398Asp
  variant of: http://identifiers.org/hgnc/14873
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000039560
  ensembl protein: ENSP00000265109
  ensembl transcript: ENST00000265109
  gene symbol: RAI14
  hgvsc: ENST00000265109.3:c.1184G>A
  hgvsp: ENSP00000265109.3:p.Gly395Asp
  variant of: http://identifiers.org/hgnc/14873
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8453
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly398Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

6-32021498-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32021498
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32021498
    reference: chr 6
allele count: 1
allele frequency: 8.727526618956187e-6
allele num: 114580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8468-16G>A
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8468-10G>A
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39968
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6117
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8498
  num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

6-32021500-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32021500
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32021500
    reference: chr 6
allele count: 1
allele frequency: 8.73576071004263e-6
allele num: 114472
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8468-12G>A
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8468-18G>A
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39767
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6059
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8498
  num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

6-32021501-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32021501
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32021501
    reference: chr 6
allele count: 3
allele frequency: 2.62118617411666e-5
allele num: 114452
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8468-13C>T
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8468-19C>T
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6049
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6592
  num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

6-32021503-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32021503
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32021503
    reference: chr 6
allele count: 8
allele frequency: 6.99998250004375e-5
allele num: 114286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8468-15C>T
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8468-21C>T
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38858
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 5941
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8498
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

6-32021510-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32021510
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32021510
    reference: chr 6
allele count: 32
allele frequency: 2.805688533501675e-4
allele num: 114054
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8468-22C>G
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8468-28C>G
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32745
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12344
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38360
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5813
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2742
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2081
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2396
  bin: 9.75e1
  variant carriers: 32
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 11
  allele frequency: 1.750310282277313e-4
  allele num: 62846
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

6-32021514-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32021514
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32021514
    reference: chr 6
allele count: 1
allele frequency: 8.78472161217211e-6
allele num: 113834
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8468-32C>T
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8468-26C>T
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5680
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
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genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 193
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
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genotype quality: GenotypeQuality
  all individuals: 36835
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8582
  num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

6-32021518-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32021518
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32021518
    reference: chr 6
allele count: 14
allele frequency: 1.232502861167356e-4
allele num: 113590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8468-36A>T
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8468-30A>T
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30781
  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 35255
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3225
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 5546
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.595150741745095e-5
  allele num: 62690
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

6-32021524-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32021524
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32021524
    reference: chr 6
allele count: 1
allele frequency: 8.834390515398343e-6
allele num: 113194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8468-42C>G
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8468-36C>G
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 693
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 497
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1865
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8578
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

6-32021525-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32021525
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32021525
    reference: chr 6
allele count: 19
allele frequency: 1.680612804500504e-4
allele num: 113054
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8468-37C>G
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8468-43C>G
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28629
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  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5502
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1827
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2381
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  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 546
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8466
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

6-32021527-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32021527
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32021527
    reference: chr 6
allele count: 19
allele frequency: 1.682309190720737e-4
allele num: 112940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8468-39A>G
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8468-45A>G
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 496
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 9.75e1
  variant carriers: 19
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 6.810133478616181e-5
  allele num: 14684
  num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

6-32023586-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023586
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023586
    reference: chr 6
allele count: 1
allele frequency: 8.711863816144826e-6
allele num: 114786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8467+42G>A
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8467+42G>A
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
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genotype depth: GenotypeDepth
  all individuals: 11890
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 3322
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 533
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15580
  num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

6-32023608-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023608
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023608
    reference: chr 6
allele count: 1
allele frequency: 8.65695932960507e-6
allele num: 115514
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8467+20G>A
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8467+20G>A
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 352
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3325
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15924
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

6-32023618-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023618
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023618
    reference: chr 6
allele count: 1
allele frequency: 8.628127696289906e-6
allele num: 115900
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8467+10T>C
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8467+10T>C
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11056
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26556
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 611
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 63566
  num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-32023632-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023632
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023632
    reference: chr 6
allele count: 11
allele frequency: 9.462691189374258e-5
allele num: 116246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8463G>T
  hgvsp: ENST00000375244.3:c.8463G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8463G>T
  hgvsp: ENST00000375247.2:c.8463G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
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genotype depth: GenotypeDepth
  all individuals: 14025
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 35
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hgvs: p.Val2821Val
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11486
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/6-32023637-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023637
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023637
    reference: chr 6
allele count: 1
allele frequency: 8.595348197555483e-6
allele num: 116342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8458G>T
  hgvsp: ENSP00000364393.3:p.Gly2820Cys
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8458G>T
  hgvsp: ENSP00000364396.2:p.Gly2820Cys
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8761
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2429
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly2820Cys
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6612
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

6-32023640-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023640
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023640
    reference: chr 6
allele count: 1
allele frequency: 8.593575442998814e-6
allele num: 116366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8455G>A
  hgvsp: ENSP00000364393.3:p.Val2819Met
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8455G>A
  hgvsp: ENSP00000364396.2:p.Val2819Met
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 8760
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 743
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val2819Met
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 874
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

6-32023641-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023641
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023641
    reference: chr 6
allele count: 2
allele frequency: 1.718272105570638e-5
allele num: 116396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8454C>G
  hgvsp: ENST00000375244.3:c.8454C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8454C>G
  hgvsp: ENST00000375247.2:c.8454C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 2600
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3323
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Thr2818Thr
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11490
  num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

6-32023649-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023649
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023649
    reference: chr 6
allele count: 1
allele frequency: 8.582070338648495e-6
allele num: 116522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8446G>C
  hgvsp: ENSP00000364393.3:p.Val2816Leu
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8446G>C
  hgvsp: ENSP00000364396.2:p.Val2816Leu
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val2816Leu
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 63844
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-32023650-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023650
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023650
    reference: chr 6
allele count: 3
allele frequency: 2.57488627585615e-5
allele num: 116510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8445G>A
  hgvsp: ENST00000375247.2:c.8445G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8445G>A
  hgvsp: ENST00000375244.3:c.8445G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 742
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro2815Pro
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8764
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

6-32023651-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023651
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023651
    reference: chr 6
allele count: 1
allele frequency: 8.581186606483944e-6
allele num: 116534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8444C>T
  hgvsp: ENSP00000364393.3:p.Pro2815Leu
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8444C>T
  hgvsp: ENSP00000364396.2:p.Pro2815Leu
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37821
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2603
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3318
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8772
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro2815Leu
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 63840
  num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS

6-32023653-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023653
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023653
    reference: chr 6
allele count: 2
allele frequency: 1.715825054477446e-5
allele num: 116562
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8442C>T
  hgvsp: ENST00000375244.3:c.8442C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8442C>T
  hgvsp: ENST00000375247.2:c.8442C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3318
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37811
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8775
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2600
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly2814Gly
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16388
  num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

6-32023657-ACACGC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023657
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023652
    reference: chr 6
allele count: 1
allele frequency: 8.573241199567908e-6
allele num: 116642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8433_8437delGCGTG
  hgvsp: ENSP00000364393.3:p.Arg2812GlyfsTer14
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8433_8437delGCGTG
  hgvsp: ENSP00000364396.2:p.Arg2812GlyfsTer12
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2601
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 73
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 101
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 64
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genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 37841
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3318
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg2812GlyfsTer14
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 63898
  num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: ACACGC
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/6-32023660-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023660
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023660
    reference: chr 6
allele count: 2
allele frequency: 1.714589441558219e-5
allele num: 116646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8435G>T
  hgvsp: ENSP00000364396.2:p.Arg2812Leu
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8435G>T
  hgvsp: ENSP00000364393.3:p.Arg2812Leu
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 37736
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2601
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 3320
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg2812Leu
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 3.130086390384375e-5
  allele num: 63896
  num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

6-32023660-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023660
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023660
    reference: chr 6
allele count: 4
allele frequency: 3.429178883116438e-5
allele num: 116646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8435G>A
  hgvsp: ENSP00000364393.3:p.Arg2812His
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8435G>A
  hgvsp: ENSP00000364396.2:p.Arg2812His
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37736
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3320
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2601
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg2812His
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 876
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

6-32023661-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023661
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023661
    reference: chr 6
allele count: 2
allele frequency: 1.714207350521119e-5
allele num: 116672
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8434C>T
  hgvsp: ENSP00000364393.3:p.Arg2812Cys
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8434C>T
  hgvsp: ENSP00000364396.2:p.Arg2812Cys
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2601
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37775
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 3317
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 742
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8776
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg2812Cys
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 3.129498654315578e-5
  allele num: 63908
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

6-32023663-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023663
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023663
    reference: chr 6
allele count: 22
allele frequency: 1.885207972715899e-4
allele num: 116698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8432G>A
  hgvsp: ENSP00000364396.2:p.Arg2811Gln
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8432G>A
  hgvsp: ENSP00000364393.3:p.Arg2811Gln
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8778
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3326
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 607
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genotype quality: GenotypeQuality
  all individuals: 740
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg2811Gln
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 19
  allele frequency: 2.971907651880123e-4
  allele num: 63932
  num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

6-32023664-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023664
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023664
    reference: chr 6
allele count: 2
allele frequency: 1.71370794989118e-5
allele num: 116706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8431C>T
  hgvsp: ENSP00000364393.3:p.Arg2811Trp
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8431C>T
  hgvsp: ENSP00000364396.2:p.Arg2811Trp
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3306
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 97
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genotype quality: GenotypeQuality
  all individuals: 901
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8787
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg2811Trp
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.564210855623338e-5
  allele num: 63930
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

6-32023680-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023680
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023680
    reference: chr 6
allele count: 4
allele frequency: 3.421318233915528e-5
allele num: 116914
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8415C>T
  hgvsp: ENST00000375247.2:c.8415C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8415C>T
  hgvsp: ENST00000375244.3:c.8415C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr2805Tyr
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 3.121780663690569e-5
  allele num: 64066
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-32023684-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023684
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023684
    reference: chr 6
allele count: 1
allele frequency: 8.547592997811816e-6
allele num: 116992
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8411T>G
  hgvsp: ENSP00000364396.2:p.Leu2804Arg
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8411T>G
  hgvsp: ENSP00000364393.3:p.Leu2804Arg
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2606
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genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu2804Arg
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 64112
  num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ

6-32023686-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023686
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023686
    reference: chr 6
allele count: 1
allele frequency: 8.54642417612471e-6
allele num: 117008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8409C>T
  hgvsp: ENST00000375247.2:c.8409C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8409C>T
  hgvsp: ENST00000375244.3:c.8409C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 7.75e1
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hgvs: p.His2803His
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6612
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

6-32023696-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023696
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023696
    reference: chr 6
allele count: 1
allele frequency: 8.542481761801439e-6
allele num: 117062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8399A>G
  hgvsp: ENSP00000364393.3:p.Tyr2800Cys
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8399A>G
  hgvsp: ENSP00000364396.2:p.Tyr2800Cys
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
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genotype depth: GenotypeDepth
  all individuals: 40
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genotype depth: GenotypeDepth
  all individuals: 2730
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1475
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hgvs: p.Tyr2800Cys
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11524
  num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

6-32023702-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023702
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023702
    reference: chr 6
allele count: 5
allele frequency: 4.27124088090072e-5
allele num: 117062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8393G>A
  hgvsp: ENSP00000364396.2:p.Arg2798His
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8393G>A
  hgvsp: ENSP00000364393.3:p.Arg2798His
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8805
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3297
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37961
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg2798His
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6612
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

6-32023703-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023703
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023703
    reference: chr 6
allele count: 9
allele frequency: 7.687314223239605e-5
allele num: 117076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8392C>T
  hgvsp: ENSP00000364396.2:p.Arg2798Cys
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8392C>T
  hgvsp: ENSP00000364393.3:p.Arg2798Cys
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11175
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37979
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 9.75e1
  variant carriers: 9
hgvs: p.Arg2798Cys
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 6.067224851352991e-5
  allele num: 16482
  num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

6-32023703-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023703
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023703
    reference: chr 6
allele count: 1
allele frequency: 8.541460248044005e-6
allele num: 117076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8392C>A
  hgvsp: ENSP00000364393.3:p.Arg2798Ser
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8392C>A
  hgvsp: ENSP00000364396.2:p.Arg2798Ser
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11175
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14083
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37979
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg2798Ser
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 64158
  num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-32023704-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023704
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023704
    reference: chr 6
allele count: 1
allele frequency: 8.540438978563499e-6
allele num: 117090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8391G>A
  hgvsp: ENST00000375244.3:c.8391G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8391G>A
  hgvsp: ENST00000375247.2:c.8391G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 11176
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
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  variant carriers: 0
hgvs: p.Gly2797Gly
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 876
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/6-32023705-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023705
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023705
    reference: chr 6
allele count: 1
allele frequency: 8.541022531217438e-6
allele num: 117082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8390G>T
  hgvsp: ENSP00000364396.2:p.Gly2797Val
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8390G>T
  hgvsp: ENSP00000364393.3:p.Gly2797Val
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27156
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genotype depth: GenotypeDepth
  all individuals: 1254
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 1161
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14095
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37997
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8825
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly2797Val
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8864
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS

6-32023706-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023706
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023706
    reference: chr 6
allele count: 2
allele frequency: 1.708379601947553e-5
allele num: 117070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8389G>A
  hgvsp: ENSP00000364393.3:p.Gly2797Arg
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8389G>A
  hgvsp: ENSP00000364396.2:p.Gly2797Arg
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3288
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8821
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly2797Arg
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8560
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

6-32023707-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023707
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023707
    reference: chr 6
allele count: 69
allele frequency: 5.910266732907337e-4
allele num: 116746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8388C>T
  hgvsp: ENST00000375244.3:c.8388C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8388C>T
  hgvsp: ENST00000375247.2:c.8388C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13939
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27034
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3132
  bin: 9.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 37893
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 8765
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
  variant carriers: 3
hgvs: p.Pro2796Pro
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 3
  allele frequency: 2.604618857440528e-4
  allele num: 11518
  num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

6-32023715-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32023715
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32023715
    reference: chr 6
allele count: 1
allele frequency: 8.539417953272305e-6
allele num: 117104
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364393
  ensembl transcript: ENST00000375244
  gene symbol: TNXB
  hgvsc: ENST00000375244.3:c.8380C>G
  hgvsp: ENSP00000364393.3:p.Leu2794Val
  variant of: http://identifiers.org/hgnc/11976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168477
  ensembl protein: ENSP00000364396
  ensembl transcript: ENST00000375247
  gene symbol: TNXB
  hgvsc: ENST00000375247.2:c.8380C>G
  hgvsp: ENSP00000364396.2:p.Leu2794Val
  variant of: http://identifiers.org/hgnc/11976
canonical: false
consequence: missense
filter: PASS
hgvs: p.Leu2794Val
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 33419
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9609
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3337
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3230
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3589
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.136e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.47e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 2.750577e6

FS
type: SiteQuality
SIO_000300: 3.294e0

QD
type: SiteQuality
SIO_000300: 1.443e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

GenotypeQuality
all individuals: 33409
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1956
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3336
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9443
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3227
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.747264e6

FS
type: SiteQuality
SIO_000300: 4.635e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.276e1

GenotypeQuality
all individuals: 3221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3207
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3335
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33408
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.597e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.07e-1

DP
type: SiteQuality
SIO_000300: 2.745593e6

GenotypeQuality
all individuals: 106
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3216
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3200
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3335
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33404
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3534
bin: 6.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 2.949272512780181e-4
allele num: 10172
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66526
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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QD
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DP
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MQ
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FS
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -2.817e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

Other
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allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
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allele frequency: 4.334257975034674e-4
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66490
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
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MQ
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DP
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QD
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.01e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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East Asian
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allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.98019801980198e-4
allele num: 10100
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 9
allele frequency: 1.354809573987656e-4
allele num: 66430
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.294e0

MQRankSum
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SIO_000300: 5.91e-1

VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.579e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.73215e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66360
num of homozygotes: 0

South Asian
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allele frequency: 6.096817461285209e-5
allele num: 16402
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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SIO_000300: 2.720368e6

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

VQSLOD
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MQ
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.306e1

BaseQRankSum
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SIO_000300: 4.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

FS
type: SiteQuality
SIO_000300: 4.537e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.72e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.507113576079093e-5
allele num: 66352
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.476e1

VQSLOD
type: SiteQuality
SIO_000300: 6.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.662e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 2.716086e6

ReadPosRankSum
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SIO_000300: 1.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.102e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66246
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.013171225937183e-4
allele num: 9870
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
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DP
type: SiteQuality
SIO_000300: 2.69504e6

MQRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 1.6032e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.532e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66220
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6600
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 1.016466761536898e-4
allele num: 9838
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -1.303e0

ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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DP
type: SiteQuality
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VQSLOD
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.552602161222208e-5
allele num: 64408
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

FS
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QD
type: SiteQuality
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DP
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ClippingRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele frequency: 8.74737578726382e-5
allele num: 11432
num of homozygotes: 0

African
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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East Asian
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Latino
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num of homozygotes: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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FS
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QD
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ClippingRankSum
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MQ
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 627
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545977366891349e-5
allele num: 64684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.843e1

DP
type: SiteQuality
SIO_000300: 1.716962e6

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.359e0

VQSLOD
type: SiteQuality
SIO_000300: -3.181e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

QD
type: SiteQuality
SIO_000300: 3.96e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.004823151125402e-4
allele num: 9952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 1.329e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.45e-1

MQ
type: SiteQuality
SIO_000300: 5.809e1

VQSLOD
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SIO_000300: -1.659e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

DP
type: SiteQuality
SIO_000300: 1.723408e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.25e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.095879384539178e-5
allele num: 64602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.82e-1

QD
type: SiteQuality
SIO_000300: 3.16e0

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.45e-1

FS
type: SiteQuality
SIO_000300: 7.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

MQ
type: SiteQuality
SIO_000300: 5.884e1

DP
type: SiteQuality
SIO_000300: 1.743567e6

VQSLOD
type: SiteQuality
SIO_000300: 7.61e-1

GenotypeQuality
all individuals: 215
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 176
bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 2062
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variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.095879384539178e-5
allele num: 64602
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.213592233009709e-3
allele num: 824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164958061509786e-4
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.713208840157615e-4
allele num: 11674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.61e-1

QD
type: SiteQuality
SIO_000300: 3.16e0

DP
type: SiteQuality
SIO_000300: 1.743567e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

MQ
type: SiteQuality
SIO_000300: 5.884e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 133
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GenotypeQuality
all individuals: 3067
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544592382070372e-5
allele num: 64742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.68e-1

DP
type: SiteQuality
SIO_000300: 1.743339e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.137e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.192e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.746e0

MQRankSum
type: SiteQuality
SIO_000300: -2.238e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.287e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526111772426212e-5
allele num: 65526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13742
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.909e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-2

DP
type: SiteQuality
SIO_000300: 1.758414e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.736e0

FS
type: SiteQuality
SIO_000300: 3.202e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.53e-1

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -3.161e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65856
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.136363636363636e-3
allele num: 880
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.771901e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

MQ
type: SiteQuality
SIO_000300: 5.831e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.452e0

FS
type: SiteQuality
SIO_000300: 3.119e0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.009e0

QD
type: SiteQuality
SIO_000300: 1.018e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510163399679845e-5
allele num: 66218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.194e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 1.786118e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.988e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

MQ
type: SiteQuality
SIO_000300: 5.865e1

VQSLOD
type: SiteQuality
SIO_000300: -8.838e-1

QD
type: SiteQuality
SIO_000300: 1.181e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.123e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 186
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509160604871571e-5
allele num: 66262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15552
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.46e-1

FS
type: SiteQuality
SIO_000300: 1.059e0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.945e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

DP
type: SiteQuality
SIO_000300: 1.790184e6

QD
type: SiteQuality
SIO_000300: 1.064e1

MQ
type: SiteQuality
SIO_000300: 5.836e1

VQSLOD
type: SiteQuality
SIO_000300: -1.608e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7616
bin: 9.75e1
variant carriers: 221

GenotypeQuality
all individuals: 3147
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GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 8
allele frequency: 6.933610677760444e-4
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15758
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 210
allele frequency: 2.026244693168661e-2
allele num: 10364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.01559060341968e-5
allele num: 66322
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 1.3e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

DP
type: SiteQuality
SIO_000300: 1.803943e6

MQ
type: SiteQuality
SIO_000300: 5.87e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16056
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.102e1

VQSLOD
type: SiteQuality
SIO_000300: -7.809e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 1.799105e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.104e0

MQRankSum
type: SiteQuality
SIO_000300: -8.46e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504936190705514e-5
allele num: 66448
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.896312029349295e-4
allele num: 10358
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.16e-1

DP
type: SiteQuality
SIO_000300: 1.800281e6

QD
type: SiteQuality
SIO_000300: 7.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.104e0

FS
type: SiteQuality
SIO_000300: 1.951e0

MQ
type: SiteQuality
SIO_000300: 5.842e1

MQRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.816e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005801196308876e-5
allele num: 66538
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

FS
type: SiteQuality
SIO_000300: 6.361e0

DP
type: SiteQuality
SIO_000300: 1.805994e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

VQSLOD
type: SiteQuality
SIO_000300: -1.172e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3712
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2091
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variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.208e0

MQRankSum
type: SiteQuality
SIO_000300: 8.01e-1

MQ
type: SiteQuality
SIO_000300: 5.843e1

DP
type: SiteQuality
SIO_000300: 1.806351e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.591e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 8.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 29212
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 4285
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 2091
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variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66542
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.01e-1

QD
type: SiteQuality
SIO_000300: 8.76e0

FS
type: SiteQuality
SIO_000300: 8.208e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.23e-1

DP
type: SiteQuality
SIO_000300: 1.806351e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

VQSLOD
type: SiteQuality
SIO_000300: -1.591e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.843e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4285
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.099048548426445e-5
allele num: 16396
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

DP
type: SiteQuality
SIO_000300: 1.807186e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.893e0

MQ
type: SiteQuality
SIO_000300: 5.839e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.053e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502584445245823e-5
allele num: 66552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

QD
type: SiteQuality
SIO_000300: 1.053e1

DP
type: SiteQuality
SIO_000300: 1.807186e6

MQRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.839e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 237
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.507482420818559e-5
allele num: 66556
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 8.204000000000001e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.84e-1

DP
type: SiteQuality
SIO_000300: 1.807942e6

MQ
type: SiteQuality
SIO_000300: 5.872e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.008e0

FS
type: SiteQuality
SIO_000300: 3.083e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.808751e6

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.835e1

VQSLOD
type: SiteQuality
SIO_000300: -1.811e0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10358
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.003453972067878e-5
allele num: 66590
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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DP
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ClippingRankSum
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InbreedingCoeff
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MQ
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 5.25e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8648
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African
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allele count: 1
allele frequency: 9.66183574879227e-5
allele num: 10350
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ClippingRankSum
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DP
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.927e1

QD
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FS
type: SiteQuality
SIO_000300: 9.368e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 1.731301939058172e-4
allele num: 11552
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10354
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

ReadPosRankSum
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.883e1

FS
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.809065e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.504910352283989e-5
allele num: 66594
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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African
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South Asian
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DP
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.15e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.906e-1

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11448
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European (Non-Finnish)
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allele count: 1
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allele num: 63050
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.457598e6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.587100050787201e-5
allele num: 63008
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South Asian
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European (Finnish)
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allele count: 0
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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DP
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.88e-1

South Asian
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East Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.762358319839985e-5
allele num: 62994
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Latino
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Other
type: Population
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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DP
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MQ
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

European (Non-Finnish)
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allele frequency: 9.531071292413267e-5
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African
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Latino
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European (Finnish)
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Other
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South Asian
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FS
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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East Asian
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European (Finnish)
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Latino
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Other
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African
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South Asian
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQ
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DP
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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South Asian
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East Asian
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Other
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European (Finnish)
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Latino
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European (Non-Finnish)
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
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BaseQRankSum
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VQSLOD
type: SiteQuality
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FS
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DP
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QD
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InbreedingCoeff
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MQRankSum
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SIO_000300: 6.05e-1

East Asian
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Latino
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European (Finnish)
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Other
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African
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South Asian
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
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MQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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MQ
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BaseQRankSum
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VQSLOD
type: SiteQuality
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European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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South Asian
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Other
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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DP
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FS
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MQRankSum
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InbreedingCoeff
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SIO_000300: 2.0e-4

QD
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VQSLOD
type: SiteQuality
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South Asian
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European (Finnish)
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Latino
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African
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allele frequency: 1.165772907437631e-4
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European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.719825931140407e-4
allele num: 62504
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Other
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DP
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.342e1

FS
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

QD
type: SiteQuality
SIO_000300: 1.688e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
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African
type: Population
allele count: 1
allele frequency: 1.166316771635176e-4
allele num: 8574
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
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European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.721306226988955e-4
allele num: 62470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.380617e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

MQ
type: SiteQuality
SIO_000300: 5.313e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

VQSLOD
type: SiteQuality
SIO_000300: -1.138e0

MQRankSum
type: SiteQuality
SIO_000300: -2.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 1.75e1

African
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63134
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
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ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 1.605379e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.823e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 1.075e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8694
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63418
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East Asian
type: Population
allele count: 1
allele frequency: 1.172058134083451e-4
allele num: 8532
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.573e0

DP
type: SiteQuality
SIO_000300: 1.638077e6

VQSLOD
type: SiteQuality
SIO_000300: -2.804e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.66e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

FS
type: SiteQuality
SIO_000300: 9.981999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.851e1

QD
type: SiteQuality
SIO_000300: 1.345e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
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African
type: Population
allele count: 1
allele frequency: 1.147052076164258e-4
allele num: 8718
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
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MQRankSum
type: SiteQuality
SIO_000300: 7.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.526e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 1.805e0

DP
type: SiteQuality
SIO_000300: 1.647415e6

MQ
type: SiteQuality
SIO_000300: 5.92e1

QD
type: SiteQuality
SIO_000300: 1.115e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.562e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.109e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63708
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.288659793814433e-3
allele num: 8536
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8732
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

MQ
type: SiteQuality
SIO_000300: 5.881e1

VQSLOD
type: SiteQuality
SIO_000300: -2.859e-1

FS
type: SiteQuality
SIO_000300: 5.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.95e-1

DP
type: SiteQuality
SIO_000300: 1.655579e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.297e0

QD
type: SiteQuality
SIO_000300: 1.147e1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56852903347241e-5
allele num: 63754
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8742
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Latino
type: Population
allele count: 0
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allele num: 11490
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-2

DP
type: SiteQuality
SIO_000300: 1.656939e6

MQ
type: SiteQuality
SIO_000300: 5.908e1

FS
type: SiteQuality
SIO_000300: 1.0006e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

VQSLOD
type: SiteQuality
SIO_000300: -1.006e0

QD
type: SiteQuality
SIO_000300: 1.018e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.70170553428472e-5
allele num: 11492
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e0

FS
type: SiteQuality
SIO_000300: 1.926e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.231e0

VQSLOD
type: SiteQuality
SIO_000300: -3.468e0

MQ
type: SiteQuality
SIO_000300: 5.742e1

MQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

QD
type: SiteQuality
SIO_000300: 1.218e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

DP
type: SiteQuality
SIO_000300: 1.657285e6

African
type: Population
allele count: 1
allele frequency: 1.143641354071363e-4
allele num: 8744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 1
allele frequency: 1.1441647597254e-3
allele num: 874
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63782
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: -7.71e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

QD
type: SiteQuality
SIO_000300: 1.249e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.84e-1

DP
type: SiteQuality
SIO_000300: 1.65771e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
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allele num: 16374
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MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.921e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

DP
type: SiteQuality
SIO_000300: 1.659145e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.49e0

MQ
type: SiteQuality
SIO_000300: 5.837e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.10798924993892e-5
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11498
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.132930229643786e-5
allele num: 63838
num of homozygotes: 0

Other
type: Population
allele count: 0
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.237e1

FS
type: SiteQuality
SIO_000300: 1.29e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.42e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

DP
type: SiteQuality
SIO_000300: 1.659446e6

MQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.722e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

East Asian
type: Population
allele count: 0
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allele num: 8554
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South Asian
type: Population
allele count: 1
allele frequency: 6.104260774020266e-5
allele num: 16382
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
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African
type: Population
allele count: 0
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Other
type: Population
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.855e0

DP
type: SiteQuality
SIO_000300: 1.659833e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.92e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.177e1

FS
type: SiteQuality
SIO_000300: 2.269e0

Latino
type: Population
allele count: 0
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allele num: 11506
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Other
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allele count: 0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8554
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8770
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.132047105988474e-5
allele num: 63856
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.41e-1

DP
type: SiteQuality
SIO_000300: 1.660093e6

QD
type: SiteQuality
SIO_000300: 1.19e1

MQ
type: SiteQuality
SIO_000300: 5.919e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

South Asian
type: Population
allele count: 1
allele frequency: 6.096817461285209e-5
allele num: 16402
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Other
type: Population
allele count: 0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
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allele num: 8790
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-2

MQ
type: SiteQuality
SIO_000300: 5.231e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.194e0

MQRankSum
type: SiteQuality
SIO_000300: -4.345e0

QD
type: SiteQuality
SIO_000300: 7.99e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

DP
type: SiteQuality
SIO_000300: 1.660744e6

South Asian
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allele count: 0
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East Asian
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Other
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.661452e6

MQ
type: SiteQuality
SIO_000300: 5.873e1

VQSLOD
type: SiteQuality
SIO_000300: 3.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.88e-1

QD
type: SiteQuality
SIO_000300: 1.078e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16408
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European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.695129585576562e-5
allele num: 63896
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African
type: Population
allele count: 0
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allele num: 8788
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Latino
type: Population
allele count: 1
allele frequency: 8.686587908269631e-5
allele num: 11512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 1.661452e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.86e-1

MQ
type: SiteQuality
SIO_000300: 5.873e1

QD
type: SiteQuality
SIO_000300: 1.078e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11512
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8796
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.657e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.682e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 4.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

DP
type: SiteQuality
SIO_000300: 1.6613e6

MQ
type: SiteQuality
SIO_000300: 5.851e1

QD
type: SiteQuality
SIO_000300: 1.109e1

South Asian
type: Population
allele count: 1
allele frequency: 6.091617933723197e-5
allele num: 16416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8792
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.662605e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

FS
type: SiteQuality
SIO_000300: 2.48e0

MQRankSum
type: SiteQuality
SIO_000300: -5.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

MQ
type: SiteQuality
SIO_000300: 5.827e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.026e0

QD
type: SiteQuality
SIO_000300: 1.039e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
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East Asian
type: Population
allele count: 1
allele frequency: 1.169590643274854e-4
allele num: 8550
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FS
type: SiteQuality
SIO_000300: 2.897e0

VQSLOD
type: SiteQuality
SIO_000300: 4.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

DP
type: SiteQuality
SIO_000300: 1.661868e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.04e-1

QD
type: SiteQuality
SIO_000300: 1.078e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.717e0

MQ
type: SiteQuality
SIO_000300: 5.892e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8824
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
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Latino
type: Population
allele count: 2
allele frequency: 1.736111111111111e-4
allele num: 11520
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.665351e6

QD
type: SiteQuality
SIO_000300: 1.282e1

VQSLOD
type: SiteQuality
SIO_000300: -1.239e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.624e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: -4.79e-1

MQ
type: SiteQuality
SIO_000300: 5.658e1

FS
type: SiteQuality
SIO_000300: 5.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.674531575294934e-5
allele num: 11528
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.665935e6

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.529e0

VQSLOD
type: SiteQuality
SIO_000300: -3.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.14e0

QD
type: SiteQuality
SIO_000300: 1.091e1

FS
type: SiteQuality
SIO_000300: 9.15e-1

MQ
type: SiteQuality
SIO_000300: 5.82e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55938123752495e-5
allele num: 64128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
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allele num: 16470
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MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.521e0

MQ
type: SiteQuality
SIO_000300: 5.554e1

QD
type: SiteQuality
SIO_000300: 1.068e1

FS
type: SiteQuality
SIO_000300: 6.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.545e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.666156e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8852
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558700667123886e-5
allele num: 64156
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.217e1

MQRankSum
type: SiteQuality
SIO_000300: -1.826e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.822e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

DP
type: SiteQuality
SIO_000300: 1.666768e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.238e0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.23558022073954e-5
allele num: 64148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8858
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
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MQ
type: SiteQuality
SIO_000300: 5.723e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
SIO_000300: 1.667026e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

FS
type: SiteQuality
SIO_000300: 1.145e0

QD
type: SiteQuality
SIO_000300: 1.373e1

MQRankSum
type: SiteQuality
SIO_000300: 7.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.948e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.642067253441661e-4
allele num: 8862
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Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.117304155366439e-5
allele num: 64158
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.667393e6

QD
type: SiteQuality
SIO_000300: 1.058e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.298e1

FS
type: SiteQuality
SIO_000300: 4.045e0

MQRankSum
type: SiteQuality
SIO_000300: -2.08e0

VQSLOD
type: SiteQuality
SIO_000300: -8.394e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.52e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8862
num of homozygotes: 0

Other
type: Population
allele count: 0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -2.08e0

VQSLOD
type: SiteQuality
SIO_000300: -8.394e-1

QD
type: SiteQuality
SIO_000300: 1.058e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 5.298e1

FS
type: SiteQuality
SIO_000300: 4.045e0

DP
type: SiteQuality
SIO_000300: 1.667393e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8864
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558457750210392e-5
allele num: 64166
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East Asian
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allele count: 0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.666948e6

VQSLOD
type: SiteQuality
SIO_000300: -1.399e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.627e1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 5.914e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.492e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.73e-1

QD
type: SiteQuality
SIO_000300: 7.86e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
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East Asian
type: Population
allele count: 1
allele frequency: 1.168224299065421e-4
allele num: 8560
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Other
type: Population
allele count: 0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
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allele num: 16486
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.16e-1

QD
type: SiteQuality
SIO_000300: 9.119999999999999e0

DP
type: SiteQuality
SIO_000300: 1.667046e6

VQSLOD
type: SiteQuality
SIO_000300: -1.366e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.287e0

MQ
type: SiteQuality
SIO_000300: 5.654e1

FS
type: SiteQuality
SIO_000300: 4.521e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
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allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8854
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558554907889405e-5
allele num: 64162
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 876
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

FS
type: SiteQuality
SIO_000300: 2.541e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.62e-1

DP
type: SiteQuality
SIO_000300: 1.667256e6

MQ
type: SiteQuality
SIO_000300: 5.91e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 62
allele frequency: 9.706305967812637e-4
allele num: 63876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.517450682852807e-4
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819946614899296e-4
allele num: 16484
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Other
type: Population
allele count: 0
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.671e0

VQSLOD
type: SiteQuality
SIO_000300: -2.862e0

DP
type: SiteQuality
SIO_000300: 1.693469e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.511e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

QD
type: SiteQuality
SIO_000300: 2.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.178e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.23e-1