9-33618295-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618295
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618295
    reference: chr 9
allele count: 1
allele frequency: 8.288437629506838e-6
allele num: 120650
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.181T>C
  hgvsp: ENSP00000368747.3:p.Phe61Leu
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7440
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4081
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20782
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4932
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14152
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3666
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2947
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Phe61Leu
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6606
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11564
  num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

9-33618298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618298
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618298
    reference: chr 9
allele count: 1
allele frequency: 8.287338604080686e-6
allele num: 120666
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.184C>T
  hgvsp: ENSP00000368747.3:p.Gln62Ter
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4931
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2947
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3667
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4080
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14155
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7438
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20695
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln62Ter
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66672
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6606
  num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

9-33618300-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618300
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618300
    reference: chr 9
allele count: 86
allele frequency: 7.127111199509389e-4
allele num: 120666
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.186G>A
  hgvsp: ENST00000379435.3:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10307
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16365
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12098
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20720
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7434
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4071
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4914
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14199
  bin: 9.75e1
  variant carriers: 86
hgvs: p.Gln62Gln
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 896
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.513775355737209e-4
  allele num: 6606
  num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

9-33618301-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618301
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618301
    reference: chr 9
allele count: 1
allele frequency: 8.287338604080686e-6
allele num: 120666
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.187G>A
  hgvsp: ENSP00000368747.3:p.Ala63Thr
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7441
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3656
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4915
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14144
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4073
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20759
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala63Thr
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11564
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16512
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

9-33618301-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618301
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618301
    reference: chr 9
allele count: 3
allele frequency: 2.486201581224206e-5
allele num: 120666
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.187G>T
  hgvsp: ENSP00000368747.3:p.Ala63Ser
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10306
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20759
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4915
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3656
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7441
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4073
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14144
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Ala63Ser
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11564
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6606
  num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/9-33618302-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618302
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618302
    reference: chr 9
allele count: 1
allele frequency: 8.28775070445881e-6
allele num: 120660
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.188C>A
  hgvsp: ENSP00000368747.3:p.Ala63Asp
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20746
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14142
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2932
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2088
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4072
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4914
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7432
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala63Asp
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11562
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 896
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-33618311-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618311
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618311
    reference: chr 9
allele count: 6
allele frequency: 4.975371909050202e-5
allele num: 120594
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.197T>A
  hgvsp: ENSP00000368747.3:p.Met66Lys
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4060
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14143
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3624
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20364
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4881
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met66Lys
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 6
  allele frequency: 5.192107995846313e-4
  allele num: 11556
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 896
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

9-33618318-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618318
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618318
    reference: chr 9
allele count: 1
allele frequency: 8.296001327360212e-6
allele num: 120540
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.204G>C
  hgvsp: ENSP00000368747.3:p.Trp68Cys
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7171
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14138
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19673
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2921
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4054
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4875
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3604
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Trp68Cys
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6606
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11548
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

9-33618323-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618323
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618323
    reference: chr 9
allele count: 1
allele frequency: 8.299581701082266e-6
allele num: 120488
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.209G>C
  hgvsp: ENSP00000368747.3:p.Arg70Pro
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11652
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18948
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4849
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7012
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2918
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4047
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14132
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg70Pro
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 894
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8578
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

9-33618325-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618325
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618325
    reference: chr 9
allele count: 1
allele frequency: 8.298341991270144e-6
allele num: 120506
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.211C>T
  hgvsp: ENSP00000368747.3:p.Gln71Ter
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10366
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14132
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19146
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4047
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6988
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2919
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4847
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3570
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln71Ter
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.020408163265306e-4
  allele num: 9800
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11544
  num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD

9-33618327-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618327
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618327
    reference: chr 9
allele count: 142
allele frequency: 1.178560164666434e-3
allele num: 120486
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.213G>C
  hgvsp: ENSP00000368747.3:p.Gln71His
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11520
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 10429
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7252
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 15513
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4840
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19187
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2081
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6963
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4032
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2912
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14212
  bin: 9.75e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 3549
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln71His
num of homozygotes: 1
population: African
  type: Population
  allele count: 129
  allele frequency: 1.316057947357682e-2
  allele num: 9802
  num of homozygotes: 1
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 894
  num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

5-33997334-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997334
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997334
    reference: chr 5
allele count: 1
allele frequency: 8.553880895762407e-6
allele num: 116906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1412G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.496G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1412G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1412G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1412G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1412G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*162G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1412G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1412G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1412G>A
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

5-33997336-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997336
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997336
    reference: chr 5
allele count: 3
allele frequency: 2.564277899343545e-5
allele num: 116992
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.*39A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*160A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1410A>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.494A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1410A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1410A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1410A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1410A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1410A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1410A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1410A>G
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7370
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

5-33997339-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997339
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997339
    reference: chr 5
allele count: 3
allele frequency: 2.563401462847768e-5
allele num: 117032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.*36C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1407C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1407C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.491C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*157C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1407C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1407C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1407C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1407C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1407C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1407C>T
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8103
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

5-33997350-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997350
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997350
    reference: chr 5
allele count: 1
allele frequency: 8.518903446748335e-6
allele num: 117386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.*6G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.480G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*146G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.*25G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1396G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1396G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1396G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1396G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1396G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1396G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1396G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1396G>A
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-33618329-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618329
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618329
    reference: chr 9
allele count: 1
allele frequency: 8.299581701082266e-6
allele num: 120488
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.215T>C
  hgvsp: ENSP00000368747.3:p.Leu72Pro
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14103
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3547
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19025
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6972
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4838
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2084
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2914
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4033
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu72Pro
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 894
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.502358703163967e-5
  allele num: 66562
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-33618332-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618332
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618332
    reference: chr 9
allele count: 1
allele frequency: 8.302751531857658e-6
allele num: 120442
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.218G>A
  hgvsp: ENSP00000368747.3:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4923
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4027
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14095
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6903
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2909
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4792
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3504
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg73Gln
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11542
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.503397678753984e-5
  allele num: 66516
  num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

9-33618337-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618337
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618337
    reference: chr 9
allele count: 1
allele frequency: 8.300683976359652e-6
allele num: 120472
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.223C>T
  hgvsp: ENSP00000368747.3:p.Gln75Ter
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6853
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4004
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14519
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18735
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln75Ter
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66554
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 894
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

9-33618337-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618337
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618335
    reference: chr 9
allele count: 455
allele frequency: 3.776811209243642e-3
allele num: 120472
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.226_227delAG
  hgvsp: ENSP00000368747.3:p.Ser76ProfsTer9
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7239
  bin: 3.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 15100
  bin: 2.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 4.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 11254
  bin: 3.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 5.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10581
  bin: 2.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 4.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 6.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4004
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18735
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6853
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14519
  bin: 9.75e1
  variant carriers: 453
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser76ProfsTer9
num of homozygotes: 1
population: Latino
  type: Population
  allele count: 9
  allele frequency: 7.79896013864818e-4
  allele num: 11540
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 894
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: CAG
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

9-33618345-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618345
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618345
    reference: chr 9
allele count: 14
allele frequency: 1.162462427553681e-4
allele num: 120434
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.231C>T
  hgvsp: ENST00000379435.3:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14804
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11103
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7231
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10579
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4004
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6789
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18062
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2932
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4747
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14257
  bin: 9.75e1
  variant carriers: 14
hgvs: p.Leu77Leu
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16508
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 14
  allele frequency: 1.212961358516722e-3
  allele num: 11542
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

9-33618346-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33618346
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 33618346
    reference: chr 9
allele count: 1
allele frequency: 8.301510874979247e-6
allele num: 120460
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205274
  ensembl protein: ENSP00000368747
  ensembl transcript: ENST00000379435
  gene symbol: TRBV20OR9-2
  hgvsc: ENST00000379435.3:c.232A>T
  hgvsp: ENSP00000368747.3:p.Met78Leu
  variant of: http://identifiers.org/hgnc/12197
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11086
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3472
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4760
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14252
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4009
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6818
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Met78Leu
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6606
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.02082482645978e-4
  allele num: 9796
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-33997362-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997362
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997362
    reference: chr 5
allele count: 3
allele frequency: 2.544529262086514e-5
allele num: 117900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.840C>T
  hgvsp: ENST00000382068.3:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1384C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.468C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.*13C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*134C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1384C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1384C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1384C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1384C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1384C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1384C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1384C>T
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp280Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

5-33997365-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997365
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997365
    reference: chr 5
allele count: 5
allele frequency: 4.237431777348385e-5
allele num: 117996
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.465G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.837G>A
  hgvsp: ENST00000382068.3:c.837G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1381G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1381G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1381G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1381G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1381G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1381G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1381G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*131G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1381G>A
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9154
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro279Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP

5-33997366-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997366
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997366
    reference: chr 5
allele count: 8
allele frequency: 6.771168365101398e-5
allele num: 118148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1380C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1380C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.836C>T
  hgvsp: ENSP00000477108.1:p.Pro279Leu
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*130C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1380C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1380C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.464C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1380C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1380C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1380C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1380C>T
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro279Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

5-33997373-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997373
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997373
    reference: chr 5
allele count: 11
allele frequency: 9.281133985825177e-5
allele num: 118520
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*123G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.829G>A
  hgvsp: ENSP00000477108.1:p.Gly277Arg
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1373G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1373G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.457G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1373G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1373G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.*2G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1373G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1373G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1373G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1373G>A
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly277Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

5-33997377-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997377
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997377
    reference: chr 5
allele count: 1
allele frequency: 8.427865895797866e-6
allele num: 118654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.781T>C
  hgvsp: ENSP00000477411.1:p.Ter261GlnextTer13
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.825T>C
  hgvsp: ENST00000382068.3:c.825T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.453T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1369T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*119T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1369T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1369T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1369T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1369T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1369T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1369T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1369T>C
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter261GlnextTer13
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

5-33997394-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997394
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997394
    reference: chr 5
allele count: 1
allele frequency: 8.416374899003501e-6
allele num: 118816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1352C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1352C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.764C>T
  hgvsp: ENSP00000477411.1:p.Pro255Leu
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*102C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1352C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1352C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.808C>T
  hgvsp: ENSP00000477108.1:p.Leu270Phe
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1352C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.436C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1352C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1352C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1352C>T
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu270Phe
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

5-33997399-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997399
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997399
    reference: chr 5
allele count: 1
allele frequency: 8.414250374434141e-6
allele num: 118846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1347G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1347G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.803G>A
  hgvsp: ENSP00000477108.1:p.Ser268Asn
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1347G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.759G>A
  hgvsp: ENST00000512079.1:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*97G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1347G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.431G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1347G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1347G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1347G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1347G>A
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser268Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

5-33997405-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997405
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997405
    reference: chr 5
allele count: 1
allele frequency: 8.413117733169558e-6
allele num: 118862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.753G>A
  hgvsp: ENSP00000477411.1:p.Met251Ile
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1341G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1341G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1341G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1341G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.797G>A
  hgvsp: ENSP00000477108.1:p.Cys266Tyr
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*91G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.425G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1341G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1341G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1341G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1341G>A
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys266Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

5-33997409-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997409
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997409
    reference: chr 5
allele count: 1
allele frequency: 8.413259296651523e-6
allele num: 118860
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1337G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.793G>C
  hgvsp: ENSP00000477108.1:p.Gly265Arg
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.421G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1337G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1337G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.749G>C
  hgvsp: ENSP00000477411.1:p.Gly250Ala
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*87G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1337G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1337G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1337G>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1337G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1337G>C
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly265Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

5-33997423-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997423
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997423
    reference: chr 5
allele count: 30
allele frequency: 2.524232633279483e-4
allele num: 118848
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1323C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1323C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1323C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1323C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1323C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.779C>T
  hgvsp: ENSP00000477108.1:p.Thr260Ile
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1323C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-5C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.407C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*73C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1323C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1323C>T
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9683
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
hgvs: p.Thr260Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/5-33997440-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997440
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997440
    reference: chr 5
allele count: 1
allele frequency: 8.414816809438059e-6
allele num: 118838
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.390T>G
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1306T>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.762T>G
  hgvsp: ENSP00000477108.1:p.Ile254Met
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*56T>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1306T>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1306T>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1306T>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1306T>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1306T>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-22T>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1306T>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1306T>G
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile254Met
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

5-33997446-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997446
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997446
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 118840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*50G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1300G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.756G>A
  hgvsp: ENSP00000477108.1:p.Met252Ile
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1300G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1300G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1300G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1300G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-28G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1300G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.384G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1300G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1300G>A
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met252Ile
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

5-33997455-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997455
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997455
    reference: chr 5
allele count: 3
allele frequency: 2.529852256628213e-5
allele num: 118584
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*41C>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.747C>A
  hgvsp: ENSP00000477108.1:p.Phe249Leu
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1291C>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1291C>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.375C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-37C>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1291C>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1291C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1291C>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1291C>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1291C>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1291C>A
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe249Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

5-33997462-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997462
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997462
    reference: chr 5
allele count: 1
allele frequency: 8.413825598223e-6
allele num: 118852
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-44A>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1284A>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.740A>T
  hgvsp: ENSP00000477108.1:p.Asp247Val
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*34A>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.368A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1284A>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1284A>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1284A>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1284A>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1284A>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1284A>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1284A>T
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp247Val
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

5-33997477-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997477
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997477
    reference: chr 5
allele count: 1
allele frequency: 8.413117733169558e-6
allele num: 118862
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1269G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*19G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1269G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1269G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.353G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.725G>A
  hgvsp: ENSP00000477108.1:p.Gly242Asp
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1269G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-59G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1269G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1269G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1269G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1269G>A
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly242Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

5-33997480-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997480
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997480
    reference: chr 5
allele count: 2
allele frequency: 1.68239707935867e-5
allele num: 118878
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.722A>G
  hgvsp: ENSP00000477108.1:p.Asn241Ser
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1266A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1266A>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*16A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1266A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1266A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-62A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1266A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1266A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.350A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1266A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1266A>G
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn241Ser
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

5-33997482-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997482
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997482
    reference: chr 5
allele count: 1
allele frequency: 8.410853365182432e-6
allele num: 118894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1264C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.720C>T
  hgvsp: ENST00000382068.3:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1264C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*14C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1264C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1264C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.348C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1264C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1264C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1264C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1264C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-64C>T
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly240Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

5-33997484-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997484
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997484
    reference: chr 5
allele count: 2
allele frequency: 1.681831177786374e-5
allele num: 118918
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.346G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1262G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.718G>A
  hgvsp: ENSP00000477108.1:p.Gly240Ser
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1262G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-66G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1262G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1262G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1262G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1262G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1262G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*12G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1262G>A
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly240Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

5-33997485-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997485
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997485
    reference: chr 5
allele count: 2
allele frequency: 1.681831177786374e-5
allele num: 118918
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.345C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-67C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1261C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1261C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1261C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1261C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.717C>T
  hgvsp: ENST00000382068.3:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1261C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1261C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1261C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*11C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1261C>T
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly239Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

5-33997492-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997492
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997492
    reference: chr 5
allele count: 2
allele frequency: 1.68123739071957e-5
allele num: 118960
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1254T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1254T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1254T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-74T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1254T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1254T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*4T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1254T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1254T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.710T>C
  hgvsp: ENSP00000477108.1:p.Val237Ala
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1254T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.338T>C
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5265
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val237Ala
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

5-33997493-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997493
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997493
    reference: chr 5
allele count: 7
allele frequency: 5.884133015029757e-5
allele num: 118964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1253G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.337G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1253G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1253G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1253G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1253G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.*3G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.709G>A
  hgvsp: ENSP00000477108.1:p.Val237Ile
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1253G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1253G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-75G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1253G>A
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val237Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

5-33997500-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997500
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997500
    reference: chr 5
allele count: 1
allele frequency: 8.40223163272165e-6
allele num: 119016
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-82A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1246A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1246A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.702A>G
  hgvsp: ENST00000382068.3:c.702A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1246A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.863A>G
  hgvsp: ENSP00000476965.1:p.Gln288Arg
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1246A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1246A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1246A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1246A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.330A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1246A>G
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23135
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln288Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

5-33997505-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997505
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997505
    reference: chr 5
allele count: 1
allele frequency: 8.399549784131571e-6
allele num: 119054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1241G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.858G>A
  hgvsp: ENST00000426255.2:c.858G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1241G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1241G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-87G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.697G>A
  hgvsp: ENSP00000477108.1:p.Val233Met
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1241G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1241G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1241G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.325G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1241G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1241G>A
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val233Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

5-33997507-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997507
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997507
    reference: chr 5
allele count: 13
allele frequency: 1.091831421228562e-4
allele num: 119066
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1239G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1239G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1239G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.323G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.695G>C
  hgvsp: ENSP00000477108.1:p.Cys232Ser
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-89G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.856G>C
  hgvsp: ENSP00000476965.1:p.Val286Leu
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1239G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1239G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1239G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1239G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1239G>C
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12398
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys232Ser
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-33997521-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997521
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997521
    reference: chr 5
allele count: 1
allele frequency: 8.39545973537511e-6
allele num: 119112
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1225A>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-103A>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.309A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1225A>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1225A>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1225A>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1225A>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1225A>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.842A>C
  hgvsp: ENSP00000476965.1:p.Lys281Thr
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1225A>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.681A>C
  hgvsp: ENSP00000477108.1:p.Gln227His
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1225A>C
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln227His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum

5-33997532-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997532
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997532
    reference: chr 5
allele count: 2
allele frequency: 1.678331067586392e-5
allele num: 119166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1214G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1214G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1214G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1214G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.670G>A
  hgvsp: ENSP00000477108.1:p.Val224Ile
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1214G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1214G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.831G>A
  hgvsp: ENST00000426255.2:c.831G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-114G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1214G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.298G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1214G>A
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val224Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

5-33997533-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997533
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997533
    reference: chr 5
allele count: 6
allele frequency: 5.035077708032627e-5
allele num: 119164
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1213C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1213C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.297C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-115C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.669C>T
  hgvsp: ENST00000382068.3:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1213C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1213C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1213C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1213C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.830C>T
  hgvsp: ENSP00000476965.1:p.Ser277Leu
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1213C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1213C>T
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser277Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

5-33997535-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997535
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997535
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 119188
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-117A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1211A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1211A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1211A>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1211A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.828A>G
  hgvsp: ENST00000426255.2:c.828A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.667A>G
  hgvsp: ENSP00000477108.1:p.Ile223Val
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.295A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1211A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1211A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1211A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1211A>G
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile223Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

5-33997541-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997541
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997541
    reference: chr 5
allele count: 12
allele frequency: 1.006221804826511e-4
allele num: 119258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1205A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.289A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-123A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1205A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.661A>G
  hgvsp: ENSP00000477108.1:p.Met221Val
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1205A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1205A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1205A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.822A>G
  hgvsp: ENST00000426255.2:c.822A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1205A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1205A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1205A>G
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Met221Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

5-33997551-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997551
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997551
    reference: chr 5
allele count: 1
allele frequency: 8.38208915190022e-6
allele num: 119302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1195G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1195G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-133G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1195G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1195G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1195G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.279G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.812G>C
  hgvsp: ENSP00000476965.1:p.Ser271Thr
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.651G>C
  hgvsp: ENSP00000477108.1:p.Gln217His
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1195G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1195G>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1195G>C
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln217His
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

5-33997552-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997552
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997552
    reference: chr 5
allele count: 1
allele frequency: 8.381246123673667e-6
allele num: 119314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1194A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.811A>G
  hgvsp: ENSP00000476965.1:p.Ser271Gly
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1194A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1194A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1194A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1194A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1194A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-134A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1194A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.650A>G
  hgvsp: ENSP00000477108.1:p.Gln217Arg
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.278A>G
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1194A>G
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln217Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

5-33997555-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997555
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997555
    reference: chr 5
allele count: 29
allele frequency: 2.430439155212873e-4
allele num: 119320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1191G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-137G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1191G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1191G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1191G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1191G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1191G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.808G>A
  hgvsp: ENSP00000476965.1:p.Val270Ile
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.647G>A
  hgvsp: ENSP00000477108.1:p.Arg216His
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.275G>A
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1191G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1191G>A
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23112
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Arg216His
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

5-33997556-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997556
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997556
    reference: chr 5
allele count: 19
allele frequency: 1.592276620350971e-4
allele num: 119326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-138C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1190C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.807C>T
  hgvsp: ENST00000426255.2:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1190C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1190C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.646C>T
  hgvsp: ENSP00000477108.1:p.Arg216Cys
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1190C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1190C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1190C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1190C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1190C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.274C>T
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12226
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Arg216Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-33997571-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997571
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997571
    reference: chr 5
allele count: 1
allele frequency: 8.373386029842748e-6
allele num: 119426
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1175G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.631G>A
  hgvsp: ENSP00000477108.1:p.Gly211Ser
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1175G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1175G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.792G>A
  hgvsp: ENST00000426255.2:c.792G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1175G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1175G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.259G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1175G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-153G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1175G>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1175G>A
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12016
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly211Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

5-33997578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997578
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997578
    reference: chr 5
allele count: 1
allele frequency: 8.372684952610603e-6
allele num: 119436
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.624C>T
  hgvsp: ENST00000382068.3:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.785C>T
  hgvsp: ENSP00000476965.1:p.Ser262Leu
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1168C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1168C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1168C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-160C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1168C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.252C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1168C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1168C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1168C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1168C>T
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser262Leu
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/5-33997582-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997582
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997582
    reference: chr 5
allele count: 1
allele frequency: 8.372264362619514e-6
allele num: 119442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-164G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1164G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.620G>T
  hgvsp: ENSP00000477108.1:p.Ser207Ile
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.781G>T
  hgvsp: ENSP00000476965.1:p.Val261Leu
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1164G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1164G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.248G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1164G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1164G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1164G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1164G>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1164G>T
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22801
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser207Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

5-33997584-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997584
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997584
    reference: chr 5
allele count: 1
allele frequency: 8.372684952610603e-6
allele num: 119436
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1162C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1162C>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1162C>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.246C>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1162C>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.618C>A
  hgvsp: ENSP00000477108.1:p.Ser206Arg
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.779C>A
  hgvsp: ENSP00000476965.1:p.Ala260Glu
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1162C>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1162C>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1162C>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1162C>A
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-166C>A
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser206Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

5-33997592-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997592
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997592
    reference: chr 5
allele count: 1
allele frequency: 8.37184381488179e-6
allele num: 119448
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1154A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1154A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1154A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-174A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1154A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1154A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1154A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.771A>G
  hgvsp: ENST00000426255.2:c.771A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.238A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.610A>G
  hgvsp: ENSP00000477108.1:p.Thr204Ala
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1154A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1154A>G
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr204Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

5-33997597-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997597
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997597
    reference: chr 5
allele count: 1
allele frequency: 8.372965369415233e-6
allele num: 119432
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.766A>G
  hgvsp: ENSP00000476965.1:p.Ile256Val
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1149A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1149A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1149A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1149A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1149A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-179A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1149A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.233A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.605A>G
  hgvsp: ENSP00000477108.1:p.Asn202Ser
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1149A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1149A>G
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5000
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn202Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

5-33997598-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997598
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997598
    reference: chr 5
allele count: 1
allele frequency: 8.372965369415233e-6
allele num: 119432
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1148A>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.765A>T
  hgvsp: ENSP00000476965.1:p.Lys255Asn
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.604A>T
  hgvsp: ENSP00000477108.1:p.Asn202Tyr
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.232A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-180A>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1148A>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1148A>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1148A>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1148A>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1148A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1148A>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1148A>T
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn202Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

5-33997598-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997598
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997598
    reference: chr 5
allele count: 2
allele frequency: 1.674593073883047e-5
allele num: 119432
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1148A>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1148A>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.232A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1148A>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1148A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1148A>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1148A>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.765A>C
  hgvsp: ENSP00000476965.1:p.Lys255Asn
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.604A>C
  hgvsp: ENSP00000477108.1:p.Asn202His
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-180A>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1148A>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1148A>C
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asn202His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

5-33997600-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997600
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997600
    reference: chr 5
allele count: 1
allele frequency: 8.376612497905846e-6
allele num: 119380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-182A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.763A>G
  hgvsp: ENSP00000476965.1:p.Lys255Glu
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1146A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1146A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1146A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1146A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1146A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.602A>G
  hgvsp: ENSP00000477108.1:p.Glu201Gly
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.230A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1146A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1146A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1146A>G
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11004
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu201Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

5-33997603-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997603
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997603
    reference: chr 5
allele count: 1
allele frequency: 8.376331836762046e-6
allele num: 119384
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1143C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1143C>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.599C>G
  hgvsp: ENSP00000477108.1:p.Ala200Gly
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.227C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1143C>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1143C>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1143C>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1143C>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-185C>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1143C>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.760C>G
  hgvsp: ENSP00000476965.1:p.Leu254Val
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1143C>G
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22309
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala200Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/5-33997615-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997615
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997615
    reference: chr 5
allele count: 3
allele frequency: 2.516398530423258e-5
allele num: 119218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1131G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.587G>T
  hgvsp: ENSP00000477108.1:p.Arg196Ile
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1131G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.748G>T
  hgvsp: ENSP00000476965.1:p.Glu250Ter
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-197G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1131G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1131G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1131G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1131G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.215G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1131G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1131G>T
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu250Ter
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/5-33997617-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997617
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997617
    reference: chr 5
allele count: 1
allele frequency: 8.389684044498884e-6
allele num: 119194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1129G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.746G>T
  hgvsp: ENSP00000476965.1:p.Gly249Val
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1129G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1129G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1129G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1129G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1129G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-199G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.213G>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.585G>T
  hgvsp: ENST00000382068.3:c.585G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1129G>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1129G>T
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly249Val
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

5-33997625-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997625
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997625
    reference: chr 5
allele count: 1
allele frequency: 8.399832003359932e-6
allele num: 119050
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1121A>G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.579-2A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1121A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1121A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1121A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.740-2A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1121A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1121A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.205A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-207A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1121A>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1121A>G
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.579-2A>G
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

5-33997626-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997626
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997626
    reference: chr 5
allele count: 1
allele frequency: 8.405762991106703e-6
allele num: 118966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1120C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.579-3C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1120C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1120C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-208C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.740-3C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1120C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1120C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1120C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1120C>T
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.204C>T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1120C>T
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.579-3C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

5-33997630-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997630
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997630
    reference: chr 5
allele count: 21
allele frequency: 1.766427778338549e-4
allele num: 118884
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-212T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273294
  ensembl protein: ENSP00000371511
  ensembl transcript: ENST00000382079
  gene symbol: RP11-1084J3.4
  hgvsc: ENST00000382079.3:c.*165+1116T>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477108
  ensembl transcript: ENST00000382068
  gene symbol: AMACR
  hgvsc: ENST00000382068.3:c.579-7T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1116T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371504
  ensembl transcript: ENST00000382072
  gene symbol: AMACR
  hgvsc: ENST00000382072.2:c.578+1116T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.200T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1116T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.740-7T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1116T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1116T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1116T>C
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1116T>C
  variant of: http://identifiers.org/hgnc/451
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10301
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4785
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10430
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20635
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: c.579-7T>C
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

5-33997633-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33997633
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33997633
    reference: chr 5
allele count: 11
allele frequency: 9.258947510184842e-5
allele num: 118804
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000424351
  ensembl transcript: ENST00000502637
  gene symbol: AMACR
  hgvsc: ENST00000502637.1:c.694+1113C>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl transcript: ENST00000514195
  gene symbol: AMACR
  hgvsc: ENST00000514195.1:n.590+1113C>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000477411
  ensembl transcript: ENST00000512079
  gene symbol: AMACR
  hgvsc: ENST00000512079.1:c.740-215C>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000476965
  ensembl transcript: ENST00000426255
  gene symbol: AMACR
  hgvsc: ENST00000426255.2:c.740-10C>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000403800
  ensembl transcript: ENST00000441713
  gene symbol: AMACR
  hgvsc: ENST00000441713.2:c.578+1113C>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250767
  ensembl transcript: ENST00000515618
  gene symbol: RP11-1084J3.3
  hgvsc: ENST00000515618.1:n.197C>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000427227
  ensembl transcript: ENST00000506639
  gene symbol: AMACR
  hgvsc: ENST00000506639.1:c.578+1113C>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000371517
  ensembl transcript: ENST00000382085
  gene symbol: AMACR
  hgvsc: ENST00000382085.3:c.739+1113C>G
  variant of: http://identifiers.org/hgnc/451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000242110
  ensembl protein: ENSP00000334424
  ensembl transcript: ENST00000335606
  gene symbol: AMACR
  hgvsc: ENST00000335606.6:c.739+1113C>G
  variant of: http://identifiers.org/hgnc/451
canonical: true
consequence: non coding transcript exon
filter: PASS
num of homozygotes: 0
reference allele: G

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.119e-1

FS
type: SiteQuality
SIO_000300: 2.658e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

QD
type: SiteQuality
SIO_000300: 1.744e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

DP
type: SiteQuality
SIO_000300: 2.048107e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.484e0

QD
type: SiteQuality
SIO_000300: 1.431e1

FS
type: SiteQuality
SIO_000300: 7.911e0

MQ
type: SiteQuality
SIO_000300: 5.867e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.57e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

DP
type: SiteQuality
SIO_000300: 2.047356e6

VQSLOD
type: SiteQuality
SIO_000300: -1.547e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

South Asian
type: Population
allele count: 16
allele frequency: 9.689922480620155e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 68
allele frequency: 1.019918406527478e-3
allele num: 66672
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.258e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 5.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

VQSLOD
type: SiteQuality
SIO_000300: -3.67e-1

DP
type: SiteQuality
SIO_000300: 2.049892e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQ
type: SiteQuality
SIO_000300: 5.874e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.802e1

FS
type: SiteQuality
SIO_000300: 1.8176e1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

DP
type: SiteQuality
SIO_000300: 2.047656e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.522e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.246e0

QD
type: SiteQuality
SIO_000300: 1.148e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.499775011249437e-5
allele num: 66670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.802e1

QD
type: SiteQuality
SIO_000300: 1.148e1

VQSLOD
type: SiteQuality
SIO_000300: -2.522e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.246e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 1.8176e1

DP
type: SiteQuality
SIO_000300: 2.047656e6

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.131e-1

DP
type: SiteQuality
SIO_000300: 2.047439e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

QD
type: SiteQuality
SIO_000300: 1.191e1

MQRankSum
type: SiteQuality
SIO_000300: 9.05e-1

FS
type: SiteQuality
SIO_000300: 8.756e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.820000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.55e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.042783e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 1.3011e1

VQSLOD
type: SiteQuality
SIO_000300: -1.611e0

QD
type: SiteQuality
SIO_000300: 1.256e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.403e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.59e-1

MQ
type: SiteQuality
SIO_000300: 5.913e1

DP
type: SiteQuality
SIO_000300: 2.035665e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.167e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.32e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.23e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 6.899999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: 8.83e-1

DP
type: SiteQuality
SIO_000300: 2.028562e6

QD
type: SiteQuality
SIO_000300: 1.684e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.615e0

DP
type: SiteQuality
SIO_000300: 2.026879e6

FS
type: SiteQuality
SIO_000300: 5.328e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 5.895e1

QD
type: SiteQuality
SIO_000300: 1.339e1

VQSLOD
type: SiteQuality
SIO_000300: -1.34e-1

Latino
type: Population
allele count: 11
allele frequency: 9.527108955482419e-4
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004807692307692e-5
allele num: 66560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

QD
type: SiteQuality
SIO_000300: 1.438e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

MQ
type: SiteQuality
SIO_000300: 5.943e1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

DP
type: SiteQuality
SIO_000300: 2.028142e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.04e-1

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8106
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8851
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23538
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4626
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532144389287247e-5
allele num: 65268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.936674e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.385e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.821e0

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

GenotypeQuality
all individuals: 485
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8106
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 166
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4628
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23615
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8857
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.125e-4
allele num: 9600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.937263e6

MQRankSum
type: SiteQuality
SIO_000300: 3.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.58e0

QD
type: SiteQuality
SIO_000300: 1.405e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.038e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

GenotypeQuality
all individuals: 76
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8872
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2141
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23826
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3746
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4626
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.777822963264199e-5
allele num: 14754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.715356458079135e-5
allele num: 11474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65276
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.181474480151229e-4
allele num: 8464
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.9389e6

VQSLOD
type: SiteQuality
SIO_000300: 9.3e-1

FS
type: SiteQuality
SIO_000300: 6.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-2

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.876e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.696e0

QD
type: SiteQuality
SIO_000300: 1.32e1

GenotypeDepth
all individuals: 254
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1796
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8098
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4633
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3749
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24709
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8905
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531862745098039e-5
allele num: 65280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 4.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.74e-1

QD
type: SiteQuality
SIO_000300: 1.362e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

MQRankSum
type: SiteQuality
SIO_000300: -6.22e-1

DP
type: SiteQuality
SIO_000300: 1.948472e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.149e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.931e1

VQSLOD
type: SiteQuality
SIO_000300: -1.575e0

FS
type: SiteQuality
SIO_000300: 6.68e0

MQRankSum
type: SiteQuality
SIO_000300: -1.672e0

QD
type: SiteQuality
SIO_000300: 1.64e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

DP
type: SiteQuality
SIO_000300: 2.022514e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.512e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.049e0

FS
type: SiteQuality
SIO_000300: 7.564e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 2.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.55e-1

DP
type: SiteQuality
SIO_000300: 2.020177e6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 1.788e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

VQSLOD
type: SiteQuality
SIO_000300: 3.85e0

DP
type: SiteQuality
SIO_000300: 2.021128e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

QD
type: SiteQuality
SIO_000300: 1.656e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.83e-1

European (Non-Finnish)
type: Population
allele count: 332
allele frequency: 4.988430447456201e-3
allele num: 66554
num of homozygotes: 1

East Asian
type: Population
allele count: 66
allele frequency: 7.701283547257876e-3
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 33
allele frequency: 1.999030772958565e-3
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.020408163265306e-3
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.568876778686043e-4
allele num: 6606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.656e1

FS
type: SiteQuality
SIO_000300: 1.788e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.85e0

DP
type: SiteQuality
SIO_000300: 2.021128e6

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

QD
type: SiteQuality
SIO_000300: 1.449e1

FS
type: SiteQuality
SIO_000300: 1.141e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.354e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.013718e6

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 8.473000000000001e0

DP
type: SiteQuality
SIO_000300: 2.012961e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.399999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.4e-2

QD
type: SiteQuality
SIO_000300: 1.099e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeDepth
all individuals: 597
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4635
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25614
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3182
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8951
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3767
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8097
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.592492805094605e-5
allele num: 65324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 6.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.278e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.21e1

DP
type: SiteQuality
SIO_000300: 1.958757e6

GenotypeDepth
all individuals: 252
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8097
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 472
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3184
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25686
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3769
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8988
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4642
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.557874762808349e-4
allele num: 8432
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.358896095637798e-5
allele num: 15726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530830935031535e-5
allele num: 65324
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

QD
type: SiteQuality
SIO_000300: 1.02e1

FS
type: SiteQuality
SIO_000300: 2.512e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-1

DP
type: SiteQuality
SIO_000300: 1.962706e6

GenotypeDepth
all individuals: 888
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8093
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 4648
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25953
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3190
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9032
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3775
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.748338081671415e-4
allele num: 8424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9562
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.710801393728223e-5
allele num: 11480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.590103736344442e-5
allele num: 65358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

MQRankSum
type: SiteQuality
SIO_000300: 5.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

DP
type: SiteQuality
SIO_000300: 1.964771e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.24e-1

QD
type: SiteQuality
SIO_000300: 1.214e1

GenotypeDepth
all individuals: 9547
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26401
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4648
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9077
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8087
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3779
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3185
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.680929095354523e-4
allele num: 65440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

QD
type: SiteQuality
SIO_000300: 9.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.755e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

DP
type: SiteQuality
SIO_000300: 1.97058e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeDepth
all individuals: 597
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3786
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8076
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9093
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26615
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4647
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527370478983382e-5
allele num: 65472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.84e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.315e1

FS
type: SiteQuality
SIO_000300: 5.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.257e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e0

DP
type: SiteQuality
SIO_000300: 1.970674e6

GenotypeDepth
all individuals: 252
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26895
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9112
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8075
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4651
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3188
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527650473571647e-5
allele num: 65460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.985e1

VQSLOD
type: SiteQuality
SIO_000300: 5.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.856e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.615e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.859e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.01e1

DP
type: SiteQuality
SIO_000300: 1.974128e6

GenotypeDepth
all individuals: 406
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26924
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8075
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4651
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3191
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9118
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3798
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.047998323202683e-4
allele num: 9542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.231e0

QD
type: SiteQuality
SIO_000300: 1.272e1

FS
type: SiteQuality
SIO_000300: 4.228e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
SIO_000300: 1.974676e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

GenotypeDepth
all individuals: 978
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4650
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8074
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3191
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3796
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26958
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.047559187094071e-4
allele num: 9546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

DP
type: SiteQuality
SIO_000300: 1.974976e6

QD
type: SiteQuality
SIO_000300: 1.142e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.132e0

GenotypeDepth
all individuals: 889
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8072
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 511
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3798
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4650
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3191
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26983
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9125
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526904049349539e-5
allele num: 65492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.026e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

VQSLOD
type: SiteQuality
SIO_000300: 3.97e-1

DP
type: SiteQuality
SIO_000300: 1.974917e6

FS
type: SiteQuality
SIO_000300: 1.963e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.986e1

GenotypeDepth
all individuals: 5253
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3800
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4651
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9129
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3190
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8084
bin: 9.75e1
variant carriers: 30

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527277170260859e-5
allele num: 65476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9540
num of homozygotes: 0

South Asian
type: Population
allele count: 29
allele frequency: 1.761204907081258e-3
allele num: 16466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 1.975995e6

QD
type: SiteQuality
SIO_000300: 1.36e1

GenotypeDepth
all individuals: 406
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9132
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27002
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4650
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3798
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3192
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8054
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528023959415684e-5
allele num: 65444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.563e1

MQ
type: SiteQuality
SIO_000300: 5.872e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.972264e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.02e0

MQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.099e0

GenotypeDepth
all individuals: 214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3801
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26986
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9129
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8054
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 529
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4649
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3191
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 1.972031e6

FS
type: SiteQuality
SIO_000300: 1.288e0

MQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.357e0

QD
type: SiteQuality
SIO_000300: 1.273e1

GenotypeDepth
all individuals: 219
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26975
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9119
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 104
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 506
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3179
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7869
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1852
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531815814466469e-5
allele num: 65282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.111932418162619e-4
allele num: 9470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.138e0

DP
type: SiteQuality
SIO_000300: 1.975279e6

QD
type: SiteQuality
SIO_000300: 6.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.706e1

FS
type: SiteQuality
SIO_000300: 9.715900000000001e1

MQ
type: SiteQuality
SIO_000300: 5.833e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e0

GenotypeDepth
all individuals: 429
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1874
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27026
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3806
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4653
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7988
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9137
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.045806316670153e-4
allele num: 9562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.25e1

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.124e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.968575e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

GenotypeDepth
all individuals: 919
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27039
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3798
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9135
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7982
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4655
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.26e-1

FS
type: SiteQuality
SIO_000300: 1.527e0

DP
type: SiteQuality
SIO_000300: 1.968926e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

QD
type: SiteQuality
SIO_000300: 1.144e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.233e0

GenotypeDepth
all individuals: 406
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3195
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4655
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27049
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3799
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7983
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 667
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9137
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65454
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.187648456057007e-4
allele num: 8420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073120369245719e-5
allele num: 16466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.969e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

VQSLOD
type: SiteQuality
SIO_000300: 6.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

DP
type: SiteQuality
SIO_000300: 1.969079e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.91e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.94e-1

QD
type: SiteQuality
SIO_000300: 1.422e1

GenotypeDepth
all individuals: 918
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1876
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27048
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9136
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4654
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7980
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3798
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.043187982474442e-4
allele num: 9586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65460
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.916e1

QD
type: SiteQuality
SIO_000300: 1.198e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

FS
type: SiteQuality
SIO_000300: 2.407e0

DP
type: SiteQuality
SIO_000300: 1.968956e6

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

GenotypeDepth
all individuals: 221
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7978
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27049
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4656
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9135
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1876
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3798
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527417137620284e-5
allele num: 65470
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073120369245719e-5
allele num: 16466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 1.968966e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

FS
type: SiteQuality
SIO_000300: 7.695e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

QD
type: SiteQuality
SIO_000300: 1.356e1

GenotypeDepth
all individuals: 5266
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3796
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1875
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9134
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7977
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4655
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27051
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65468
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073120369245719e-5
allele num: 16466
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.187084520417854e-4
allele num: 8424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.968883e6

QD
type: SiteQuality
SIO_000300: 1.302e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.92e-1

FS
type: SiteQuality
SIO_000300: 3.387e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeDepth
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7975
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1874
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3796
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27077
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4658
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.040582726326743e-4
allele num: 9610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526810797605961e-5
allele num: 65496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.968919e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

FS
type: SiteQuality
SIO_000300: 5.649999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.74e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.278e1

VQSLOD
type: SiteQuality
SIO_000300: 7.65e-1

GenotypeDepth
all individuals: 1395
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1875
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3192
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7975
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1414
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4656
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27083
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.040149781568546e-4
allele num: 9614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65500
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.643872221547431e-4
allele num: 16466
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.971e1

FS
type: SiteQuality
SIO_000300: 5.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.352e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.27e-1

DP
type: SiteQuality
SIO_000300: 1.968858e6

MQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.34e-1

GenotypeDepth
all individuals: 405
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1874
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27115
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7966
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4657
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3800
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9143
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65528
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.037559659680432e-4
allele num: 9638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 5.9e1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e-1

QD
type: SiteQuality
SIO_000300: 1.145e1

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 1.279e0

DP
type: SiteQuality
SIO_000300: 1.968835e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeDepth
all individuals: 23137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3798
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1871
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4655
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9144
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7965
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27107
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525413387027885e-5
allele num: 65556
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

DP
type: SiteQuality
SIO_000300: 1.969017e6

MQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

FS
type: SiteQuality
SIO_000300: 9.654999999999999e0

QD
type: SiteQuality
SIO_000300: 1.482e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.071e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: -5.975e-1

GenotypeDepth
all individuals: 1391
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27123
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3800
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7963
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4653
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.346592086181894e-3
allele num: 9654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

DP
type: SiteQuality
SIO_000300: 1.969142e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.03e-1

QD
type: SiteQuality
SIO_000300: 1.451e1

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-2

GenotypeDepth
all individuals: 88
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3794
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3192
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7947
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4656
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27153
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9147
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524808636516117e-5
allele num: 65582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.968916e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.186e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.214e0

MQRankSum
type: SiteQuality
SIO_000300: 6.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 6.81e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeDepth
all individuals: 587
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3788
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9143
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7934
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3191
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4650
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65606
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.061005770816158e-4
allele num: 9704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

FS
type: SiteQuality
SIO_000300: 2.112e0

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 1.42e1

DP
type: SiteQuality
SIO_000300: 1.968725e6

GenotypeDepth
all individuals: 254
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3188
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9132
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27186
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3789
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7936
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 4646
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.645200486026732e-4
allele num: 16460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

FS
type: SiteQuality
SIO_000300: 7.065e0

QD
type: SiteQuality
SIO_000300: 1.249e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.968635e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.473e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.79e-1

GenotypeDepth
all individuals: 586
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3189
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4648
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3787
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7930
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9136
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.949e0

DP
type: SiteQuality
SIO_000300: 1.968472e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

QD
type: SiteQuality
SIO_000300: 4.79e0

GenotypeDepth
all individuals: 427
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7927
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 9132
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4639
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27249
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3777
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.075334143377886e-5
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.025430680885972e-3
allele num: 9752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523507724184162e-5
allele num: 65638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.4e-1

DP
type: SiteQuality
SIO_000300: 1.968496e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

QD
type: SiteQuality
SIO_000300: 1.455e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.36e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

GenotypeDepth
all individuals: 400
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3760
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27229
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4621
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7906
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1859
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9106
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.181474480151229e-4
allele num: 8464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: -1.049e0

VQSLOD
type: SiteQuality
SIO_000300: -2.565e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 7.773e0

QD
type: SiteQuality
SIO_000300: 1.243e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.4e0

DP
type: SiteQuality
SIO_000300: 1.966549e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

GenotypeDepth
all individuals: 910
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7905
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1859
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4621
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3758
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27181
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3164
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9106
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022285831118381e-4
allele num: 9782
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.185e0

QD
type: SiteQuality
SIO_000300: 1.537e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.899e0

DP
type: SiteQuality
SIO_000300: 1.966083e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

GenotypeDepth
all individuals: 877
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9085
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4617
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7918
bin: 9.75e1
variant carriers: 29

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022076860179886e-4
allele num: 9784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 1.519018106695832e-3
allele num: 16458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.569130951293064e-5
allele num: 65658
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

FS
type: SiteQuality
SIO_000300: 5.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

QD
type: SiteQuality
SIO_000300: 1.421e1

DP
type: SiteQuality
SIO_000300: 1.966084e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

GenotypeDepth
all individuals: 356
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 117
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3739
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27216
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4612
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7901
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 873
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9078
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 1.093825960136121e-3
allele num: 16456
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.727526618956188e-5
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.965384e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.330000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.064e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.318e1

MQRankSum
type: SiteQuality
SIO_000300: 8.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.69e-1

GenotypeDepth
all individuals: 581
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1828
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27189
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3694
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7865
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4562
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9007
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.018744906275469e-4
allele num: 9816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.958893e6

FS
type: SiteQuality
SIO_000300: 1.2415e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.152e0

MQ
type: SiteQuality
SIO_000300: 5.875e1

MQRankSum
type: SiteQuality
SIO_000300: 9.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.47e-1

QD
type: SiteQuality
SIO_000300: 1.448e1

VQSLOD
type: SiteQuality
SIO_000300: -8.329e-1

GenotypeDepth
all individuals: 216
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3074
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3635
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4495
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7849
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1359
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8898
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27160
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65742
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.739730816290858e-5
allele num: 11442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.693e0

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.77e-1

FS
type: SiteQuality
SIO_000300: 9.752000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 5.04e0

DP
type: SiteQuality
SIO_000300: 1.954818e6

GenotypeDepth
all individuals: 254
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27114
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4487
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8875
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3062
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7850
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 202
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.01667344448963e-4
allele num: 9836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.062e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.462e0

MQRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.8e-1

DP
type: SiteQuality
SIO_000300: 1.952652e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.573e0

QD
type: SiteQuality
SIO_000300: 1.416e1

GenotypeDepth
all individuals: 254
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4465
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3056
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8790
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26982
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7845
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.08198515995621e-5
allele num: 16442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.94e-1

DP
type: SiteQuality
SIO_000300: 1.951094e6

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

FS
type: SiteQuality
SIO_000300: 3.623e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.934e0

QD
type: SiteQuality
SIO_000300: 1.243e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

GenotypeDepth
all individuals: 254
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27286
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8758
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4415
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3038
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3576
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7836
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520588771972508e-5
allele num: 65764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.436e0

FS
type: SiteQuality
SIO_000300: 9.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e0

QD
type: SiteQuality
SIO_000300: 1.498e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

DP
type: SiteQuality
SIO_000300: 1.946867e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 910
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3021
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7833
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8720
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3543
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4384
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.015022330491271e-4
allele num: 9852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65768
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.943339e6

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.408e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 9.19e0

GenotypeDepth
all individuals: 254
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27122
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3018
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8719
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7833
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.745845723281441e-5
allele num: 11434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 1.942673e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 4.98e-1

QD
type: SiteQuality
SIO_000300: 1.477e1

MQRankSum
type: SiteQuality
SIO_000300: -5.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.341e0

GenotypeDepth
all individuals: 397
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3018
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7833
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 214
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8719
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27122
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.749169144656288e-4
allele num: 11434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 4.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 1.477e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.341e0

DP
type: SiteQuality
SIO_000300: 1.942673e6

MQ
type: SiteQuality
SIO_000300: 5.934e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeDepth
all individuals: 714
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3016
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26411
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4378
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8657
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1787
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3533
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7829
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 412
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52031135976648e-5
allele num: 65776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

DP
type: SiteQuality
SIO_000300: 1.939109e6

VQSLOD
type: SiteQuality
SIO_000300: -3.023e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

QD
type: SiteQuality
SIO_000300: 1.168e1

FS
type: SiteQuality
SIO_000300: 1.078e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.017e0

GenotypeDepth
all individuals: 425
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7818
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 374
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1779
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4327
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26915
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3478
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9862
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.11545988258317e-5
allele num: 16352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.019e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

FS
type: SiteQuality
SIO_000300: 7.579e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 1.93858e6

QD
type: SiteQuality
SIO_000300: 1.045e1

GenotypeDepth
all individuals: 4896
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8376
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3394
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2947
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4243
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26283
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7809
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 219
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65752
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.355712603062426e-4
allele num: 8490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16192
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.397e0

VQSLOD
type: SiteQuality
SIO_000300: 6.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.631e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: 5.96e-1

QD
type: SiteQuality
SIO_000300: 1.272e1

DP
type: SiteQuality
SIO_000300: 1.922371e6

GenotypeDepth
all individuals: 579
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4222
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3382
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26362
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8335
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2934
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7803
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 204
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520820026158104e-5
allele num: 65754
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.493e1

DP
type: SiteQuality
SIO_000300: 1.920149e6

MQ
type: SiteQuality
SIO_000300: 5.922e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 1.072e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.248e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.38e-1

GenotypeDepth
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3264
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7790
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 435
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25663
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4135
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2874
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8069
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521375323292256e-5
allele num: 65730
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.068e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.444e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.90336e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.14e-1

QD
type: SiteQuality
SIO_000300: 7.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-2

GenotypeDepth
all individuals: 2335
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8043
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3250
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2861
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1751
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25459
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7788
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4111
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15984
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.009693053311793e-4
allele num: 9904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65700
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

QD
type: SiteQuality
SIO_000300: 5.18e0

VQSLOD
type: SiteQuality
SIO_000300: -8.273e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.900566e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeDepth
all individuals: 579
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7854
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24367
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7797
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 2824
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 547
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2500
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3165
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4019
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65710
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 2.116508768393469e-3
allele num: 9922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

DP
type: SiteQuality
SIO_000300: 1.884345e6