7-99801704-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801704
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801704
    reference: chr 7
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1748C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1228C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1478G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2761C>T
  hgvsp: ENSP00000319318.5:p.Arg921Ter
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1478G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1478G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1478G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2761C>T
  hgvsp: ENSP00000400359.1:p.Arg921Ter
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1836C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2587C>T
  hgvsp: ENSP00000377586.2:p.Arg863Ter
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1478G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1478G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg921Ter
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

7-99801705-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801705
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801705
    reference: chr 7
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1479C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1837G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1479C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1479C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2588G>A
  hgvsp: ENSP00000377586.2:p.Arg863Gln
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1749G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1479C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1479C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2762G>A
  hgvsp: ENSP00000400359.1:p.Arg921Gln
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1227G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1479C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2762G>A
  hgvsp: ENSP00000319318.5:p.Arg921Gln
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg921Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

7-99801705-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801705
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801705
    reference: chr 7
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2762G>T
  hgvsp: ENSP00000400359.1:p.Arg921Leu
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2762G>T
  hgvsp: ENSP00000319318.5:p.Arg921Leu
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1479C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1479C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1479C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2588G>T
  hgvsp: ENSP00000377586.2:p.Arg863Leu
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1227G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1837G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1479C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1479C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1479C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1749G>T
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg921Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

7-99801711-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801711
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801711
    reference: chr 7
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1755A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1485T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1485T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2594A>G
  hgvsp: ENSP00000377586.2:p.His865Arg
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1843A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1485T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1485T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2768A>G
  hgvsp: ENSP00000400359.1:p.His923Arg
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1221A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1485T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2768A>G
  hgvsp: ENSP00000319318.5:p.His923Arg
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1485T>C
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His923Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

7-99801712-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801712
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801712
    reference: chr 7
allele count: 3
allele frequency: 2.471128976458378e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1220T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1486A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2769T>C
  hgvsp: ENST00000317296.5:c.2769T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1486A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1486A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2595T>C
  hgvsp: ENST00000394018.2:c.2595T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1844T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1486A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2769T>C
  hgvsp: ENST00000426455.1:c.2769T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1756T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1486A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1486A>G
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His923His
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

7-99801714-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801714
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801713
    reference: chr 7
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1489delA
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2773delT
  hgvsp: ENSP00000400359.1:p.Ser925ProfsTer6
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2599delT
  hgvsp: ENSP00000377586.2:p.Ser867ProfsTer6
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1489delA
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1489delA
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1760delT
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1489delA
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1489delA
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2773delT
  hgvsp: ENSP00000319318.5:p.Ser925ProfsTer6
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1848delT
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1216delT
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1489delA
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser925ProfsTer6
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: GT
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

7-99801719-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801719
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801719
    reference: chr 7
allele count: 4
allele frequency: 3.294947198471145e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1493G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1493G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2776C>T
  hgvsp: ENSP00000319318.5:p.Arg926Ter
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1493G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1493G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2776C>T
  hgvsp: ENSP00000400359.1:p.Arg926Ter
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1213C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2602C>T
  hgvsp: ENSP00000377586.2:p.Arg868Ter
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1851C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1493G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1763C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1493G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18790
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg926Ter
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

7-99801720-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801720
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801720
    reference: chr 7
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1494C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1852G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1494C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1494C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2777G>A
  hgvsp: ENSP00000400359.1:p.Arg926Gln
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1494C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1764G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1494C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1494C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2603G>A
  hgvsp: ENSP00000377586.2:p.Arg868Gln
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1212G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2777G>A
  hgvsp: ENSP00000319318.5:p.Arg926Gln
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg926Gln
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

7-99801741-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801741
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801740
    reference: chr 7
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1190delG
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1516delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2625delG
  hgvsp: ENSP00000377586.2:p.Lys875AsnfsTer16
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2799delG
  hgvsp: ENSP00000400359.1:p.Lys933AsnfsTer16
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1516delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1516delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1786delG
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1516delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2799delG
  hgvsp: ENSP00000319318.5:p.Lys933AsnfsTer16
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1874delG
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1516delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1516delC
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys933AsnfsTer16
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: AG
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum

7-99801746-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801746
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801746
    reference: chr 7
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1520C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1789+1G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1520C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2802+1G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1877+1G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1186G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2802+1G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1520C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1520C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1520C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1520C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2628+1G>A
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2802+1G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

7-99801746-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801746
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801746
    reference: chr 7
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1520C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1520C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2802+1G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1186G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1877+1G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1789+1G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1520C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1520C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2802+1G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1520C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2628+1G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1520C>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2802+1G>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-99801749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801749
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801749
    reference: chr 7
allele count: 4
allele frequency: 3.297663605335619e-5
allele num: 121298
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1523G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2802+4C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1789+4C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1523G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2628+4C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1523G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1523G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1523G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1877+4C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2802+4C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1523G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1183C>T
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10006
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.2802+4C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

7-99801764-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801764
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801764
    reference: chr 7
allele count: 1
allele frequency: 8.255047961828658e-6
allele num: 121138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1538T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1168A>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1789+19A>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2802+19A>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1538T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1538T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2802+19A>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1538T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1538T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1538T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2628+19A>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1877+19A>T
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18475
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

7-99801775-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801775
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801775
    reference: chr 7
allele count: 1
allele frequency: 8.264462809917356e-6
allele num: 121000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1789+30G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1549C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2802+30G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1549C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1157G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1549C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1877+30G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1549C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2802+30G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1549C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2628+30G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1549C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9693
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

7-99801776-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801776
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801776
    reference: chr 7
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2628+31C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1156C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1550G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1877+31C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2802+31C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1550G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1550G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2802+31C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1550G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1550G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1550G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1789+31C>T
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17548
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

7-99801777-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801777
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801777
    reference: chr 7
allele count: 1
allele frequency: 8.265692417053776e-6
allele num: 120982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1155C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1551G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1551G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1877+32C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2802+32C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1551G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2628+32C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2802+32C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1551G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1789+32C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1551G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1551G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15909
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

7-99801778-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801778
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801778
    reference: chr 7
allele count: 1
allele frequency: 8.267742575567167e-6
allele num: 120952
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2628+33C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1552G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1789+33C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1552G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2802+33C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1552G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1552G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1552G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2802+33C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1877+33C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1552G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1154C>G
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-99801785-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801785
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801785
    reference: chr 7
allele count: 1
allele frequency: 8.274720728175424e-6
allele num: 120850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1559G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1789+40C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1559G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1559G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2802+40C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2628+40C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1877+40C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1559G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1147C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1559G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1559G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2802+40C>A
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15037
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-99801787-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801787
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801787
    reference: chr 7
allele count: 1
allele frequency: 8.277734549608463e-6
allele num: 120806
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2802+42C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1561G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1561G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1789+42C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1561G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2628+42C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2802+42C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1561G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1561G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1145C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1877+42C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1561G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

7-99801791-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801791
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801791
    reference: chr 7
allele count: 16
allele frequency: 1.325534770433947e-4
allele num: 120706
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1565C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1565C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1565C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1789+46G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1565C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2802+46G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1565C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2802+46G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2628+46G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1565C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1141G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1877+46G>A
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6645
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16299
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8958
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14946
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

7-99801792-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801792
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801792
    reference: chr 7
allele count: 3
allele frequency: 2.486366424107809e-5
allele num: 120658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1140T>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2628+47T>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1877+47T>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1566A>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2802+47T>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1566A>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2802+47T>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1566A>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1566A>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1789+47T>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1566A>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1566A>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14771
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-99801794-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801794
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801794
    reference: chr 7
allele count: 2
allele frequency: 1.658869977771142e-5
allele num: 120564
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1138T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2802+49T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1568A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1568A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1877+49T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1568A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1568A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2802+49T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1568A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1568A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1789+49T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2628+49T>C
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14730
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-99801795-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99801795
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99801795
    reference: chr 7
allele count: 1
allele frequency: 8.301786544464368e-6
allele num: 120456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1569G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1569G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1877+50C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-1137C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2628+50C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1569G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1789+50C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2802+50C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1569G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1569G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2802+50C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1569G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4342
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

7-99802203-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802203
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802203
    reference: chr 7
allele count: 5
allele frequency: 4.183750313781274e-5
allele num: 119510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-729C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1977G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1790-47C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1977G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1878-47C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1977G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1977G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2629-47C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1977G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2803-47C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2803-47C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1977G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25337
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8222
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15733
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

7-99802204-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802204
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802204
    reference: chr 7
allele count: 1
allele frequency: 8.359246999030327e-6
allele num: 119628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1978C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-728G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1790-46G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2803-46G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1978C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1978C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1878-46G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1978C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2629-46G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1978C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1978C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2803-46G>A
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

7-99802206-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802206
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802206
    reference: chr 7
allele count: 11
allele frequency: 9.191790895113309e-5
allele num: 119672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1980G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2803-44C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2629-44C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1980G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1980G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2803-44C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1980G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1980G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1980G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1878-44C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1790-44C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-726C>T
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25665
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8257
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ

7-99802207-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802207
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802207
    reference: chr 7
allele count: 6
allele frequency: 5.00801282051282e-5
allele num: 119808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1981C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1981C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2629-43G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1981C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1981C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2803-43G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-725G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1790-43G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1981C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1981C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1878-43G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2803-43G>A
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8255
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/7-99802213-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802213
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802213
    reference: chr 7
allele count: 1
allele frequency: 8.342092530490349e-6
allele num: 119874
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1987G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1987G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-719C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1878-37C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1987G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1987G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1987G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2803-37C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2803-37C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2629-37C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1987G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1790-37C>A
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8306
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

7-99802218-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802218
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802218
    reference: chr 7
allele count: 1
allele frequency: 8.332777814812346e-6
allele num: 120008
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1992A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1992A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2803-32T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2803-32T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1992A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1992A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2629-32T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-714T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1992A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1878-32T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1992A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1790-32T>C
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD

7-99802223-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802223
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802223
    reference: chr 7
allele count: 1
allele frequency: 8.322929671244279e-6
allele num: 120150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1878-27C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-1997G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-1997G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2629-27C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-709C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-1997G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1790-27C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2803-27C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-1997G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-1997G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-1997G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2803-27C>T
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

7-99802233-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802233
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802233
    reference: chr 7
allele count: 1
allele frequency: 8.298341991270144e-6
allele num: 120506
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2007T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2803-17A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2007T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-699A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2803-17A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2007T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2629-17A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2007T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2007T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2007T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1878-17A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1790-17A>G
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27228
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19096
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

7-99802237-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802237
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802237
    reference: chr 7
allele count: 2
allele frequency: 1.658539821541115e-5
allele num: 120588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-695C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2011G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1878-13C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1790-13C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2011G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2011G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2629-13C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2803-13C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2011G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2011G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2011G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2803-13C>G
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27346
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

7-99802241-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802241
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802241
    reference: chr 7
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2629-9T>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2803-9T>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1790-9T>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1878-9T>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2015A>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2015A>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2015A>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2015A>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2015A>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2803-9T>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-691T>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2015A>C
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

7-99802243-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802243
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802243
    reference: chr 7
allele count: 1
allele frequency: 8.282945415389712e-6
allele num: 120730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1878-7G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2803-7G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2017C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2017C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2017C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2017C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1790-7G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2803-7G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2017C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-689G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2629-7G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2017C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19204
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2803-7G>A
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

7-99802256-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802256
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802256
    reference: chr 7
allele count: 3
allele frequency: 2.479871707970308e-5
allele num: 120974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1884A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-676A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2809A>G
  hgvsp: ENSP00000400359.1:p.Thr937Ala
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2030T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2635A>G
  hgvsp: ENSP00000377586.2:p.Thr879Ala
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2030T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2030T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1796A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2030T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2809A>G
  hgvsp: ENSP00000319318.5:p.Thr937Ala
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2030T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2030T>C
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8616
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr937Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

7-99802262-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802262
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802262
    reference: chr 7
allele count: 1
allele frequency: 8.262004692818665e-6
allele num: 121036
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-670C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2036G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2036G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2815C>G
  hgvsp: ENSP00000400359.1:p.Leu939Val
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1890C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1802C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2641C>G
  hgvsp: ENSP00000377586.2:p.Leu881Val
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2815C>G
  hgvsp: ENSP00000319318.5:p.Leu939Val
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2036G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2036G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2036G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2036G>C
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu939Val
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

7-99802263-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802263
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802262
    reference: chr 7
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2038delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2038delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2038delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1892delG
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2038delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2817delG
  hgvsp: ENSP00000319318.5:p.Leu940CysfsTer9
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-668delG
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2038delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1804delG
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2038delC
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2817delG
  hgvsp: ENSP00000400359.1:p.Leu940CysfsTer9
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2643delG
  hgvsp: ENSP00000377586.2:p.Leu882CysfsTer9
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu940CysfsTer9
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: TG
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

7-99802265-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802265
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802265
    reference: chr 7
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1805C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2818C>T
  hgvsp: ENST00000317296.5:c.2818C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2039G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2039G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2818C>T
  hgvsp: ENST00000426455.1:c.2818C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2039G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2039G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1893C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2039G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-667C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2644C>T
  hgvsp: ENST00000394018.2:c.2644C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2039G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu940Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

7-99802270-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802270
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802270
    reference: chr 7
allele count: 10
allele frequency: 8.25695648583932e-5
allele num: 121110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2823G>A
  hgvsp: ENST00000317296.5:c.2823G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2044C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1810G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2044C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1898G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-662G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2044C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2649G>A
  hgvsp: ENST00000394018.2:c.2649G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2823G>A
  hgvsp: ENST00000426455.1:c.2823G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2044C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2044C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2044C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28020
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19093
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8632
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln941Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

7-99802272-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802272
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802272
    reference: chr 7
allele count: 2
allele frequency: 1.651309488424321e-5
allele num: 121116
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2046T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2046T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2046T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2046T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1900A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1812A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2651A>G
  hgvsp: ENSP00000377586.2:p.Glu884Gly
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2825A>G
  hgvsp: ENSP00000400359.1:p.Glu942Gly
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2046T>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2825A>G
  hgvsp: ENSP00000319318.5:p.Glu942Gly
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-660A>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2046T>C
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28033
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu942Gly
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

7-99802277-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802277
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802277
    reference: chr 7
allele count: 2
allele frequency: 1.651145895251304e-5
allele num: 121128
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2051C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2830G>A
  hgvsp: ENSP00000319318.5:p.Gly944Arg
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1905G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1817G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2051C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2830G>A
  hgvsp: ENSP00000400359.1:p.Gly944Arg
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2656G>A
  hgvsp: ENSP00000377586.2:p.Gly886Arg
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-655G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2051C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2051C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2051C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2051C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly944Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-99802284-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802284
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802284
    reference: chr 7
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2058T>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2837A>C
  hgvsp: ENSP00000319318.5:p.Gln946Pro
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2837A>C
  hgvsp: ENSP00000400359.1:p.Gln946Pro
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2663A>C
  hgvsp: ENSP00000377586.2:p.Gln888Pro
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2058T>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1824A>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-648A>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2058T>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1912A>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2058T>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2058T>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2058T>G
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln946Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ

7-99802285-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802285
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802285
    reference: chr 7
allele count: 1
allele frequency: 8.254502831294471e-6
allele num: 121146
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2059C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2838G>A
  hgvsp: ENST00000426455.1:c.2838G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2059C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2059C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2059C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2664G>A
  hgvsp: ENST00000394018.2:c.2664G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2059C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2838G>A
  hgvsp: ENST00000317296.5:c.2838G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1913G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1825G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2059C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-647G>A
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln946Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

7-99802287-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802287
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802287
    reference: chr 7
allele count: 3
allele frequency: 2.476309967973058e-5
allele num: 121148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2840G>A
  hgvsp: ENSP00000319318.5:p.Gly947Asp
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-645G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2061C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1915G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2061C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2061C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2840G>A
  hgvsp: ENSP00000400359.1:p.Gly947Asp
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2061C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2666G>A
  hgvsp: ENSP00000377586.2:p.Gly889Asp
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1827G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2061C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2061C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly947Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

7-99802295-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802295
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802295
    reference: chr 7
allele count: 1
allele frequency: 8.25300409349003e-6
allele num: 121168
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2069C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1835G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1923G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2848G>T
  hgvsp: ENSP00000400359.1:p.Glu950Ter
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2848G>T
  hgvsp: ENSP00000319318.5:p.Glu950Ter
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2069C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2069C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2069C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2674G>T
  hgvsp: ENSP00000377586.2:p.Glu892Ter
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2069C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-637G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2069C>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu950Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

7-99802298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802298
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802298
    reference: chr 7
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2072G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2072G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2677C>T
  hgvsp: ENSP00000377586.2:p.Leu893Phe
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1926C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2072G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2851C>T
  hgvsp: ENSP00000400359.1:p.Leu951Phe
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2851C>T
  hgvsp: ENSP00000319318.5:p.Leu951Phe
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2072G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-634C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2072G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2072G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1838C>T
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu951Phe
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

7-99802307-TTCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802307
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802304
    reference: chr 7
allele count: 1
allele frequency: 8.25300409349003e-6
allele num: 121168
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2084_*49-2082delTGA
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1938_1940delATC
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2084_192-2082delTGA
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2084_665-2082delTGA
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2084_159-2082delTGA
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-622_2695-620delATC
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2863_2865delATC
  hgvsp: ENSP00000400359.1:p.Ile955del
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2084_740-2082delTGA
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2863_2865delATC
  hgvsp: ENSP00000319318.5:p.Ile955del
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1850_1852delATC
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2689_2691delATC
  hgvsp: ENSP00000377586.2:p.Ile897del
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2084_130-2082delTGA
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile955del
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: TTCA
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-99802309-CATCGAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802309
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802303
    reference: chr 7
allele count: 1
allele frequency: 8.252867871585376e-6
allele num: 121170
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2865_2870delCGAGAT
  hgvsp: ENSP00000400359.1:p.Ile955_Glu956del
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2691_2696delCGAGAT
  hgvsp: ENSP00000377586.2:p.Ile897_Glu898del
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-620_2695-615delCGAGAT
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1940_1945delCGAGAT
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1852_1857delCGAGAT
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2865_2870delCGAGAT
  hgvsp: ENSP00000319318.5:p.Ile955_Glu956del
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile955_Glu956del
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: CATCGAG
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

7-99802312-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802312
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802312
    reference: chr 7
allele count: 5
allele frequency: 4.126638275395332e-5
allele num: 121164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1940C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2086G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2086G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2691C>T
  hgvsp: ENST00000394018.2:c.2691C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2865C>T
  hgvsp: ENST00000426455.1:c.2865C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2086G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2086G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2865C>T
  hgvsp: ENST00000317296.5:c.2865C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2086G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1852C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2086G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-620C>T
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile955Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

7-99802331-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802331
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802331
    reference: chr 7
allele count: 70
allele frequency: 5.786080343858489e-4
allele num: 120980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2105G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2710C>T
  hgvsp: ENSP00000377586.2:p.Arg904Trp
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2105G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2105G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1959C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2105G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2884C>T
  hgvsp: ENSP00000319318.5:p.Arg962Trp
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1871C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-601C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2884C>T
  hgvsp: ENSP00000400359.1:p.Arg962Trp
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2105G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2105G>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8404
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27869
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18879
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg962Trp
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

7-99802332-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802332
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802332
    reference: chr 7
allele count: 22
allele frequency: 1.818332093561451e-4
allele num: 120990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2106C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1872G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2885G>A
  hgvsp: ENSP00000319318.5:p.Arg962Gln
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2885G>A
  hgvsp: ENSP00000400359.1:p.Arg962Gln
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-600G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2106C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2106C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2106C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2711G>A
  hgvsp: ENSP00000377586.2:p.Arg904Gln
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1960G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2106C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2106C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg962Gln
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

7-99802332-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802332
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802332
    reference: chr 7
allele count: 2
allele frequency: 1.653029175964956e-5
allele num: 120990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2711G>T
  hgvsp: ENSP00000377586.2:p.Arg904Leu
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2885G>T
  hgvsp: ENSP00000400359.1:p.Arg962Leu
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2106C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2106C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2885G>T
  hgvsp: ENSP00000319318.5:p.Arg962Leu
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1960G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2106C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2106C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2106C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1872G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2106C>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-600G>T
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg962Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

7-99802337-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802337
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802337
    reference: chr 7
allele count: 1
allele frequency: 8.266375690242371e-6
allele num: 120972
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2111A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2111A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2111A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2716T>C
  hgvsp: ENSP00000377586.2:p.Phe906Leu
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2111A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2111A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1877T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2890T>C
  hgvsp: ENSP00000400359.1:p.Phe964Leu
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2890T>C
  hgvsp: ENSP00000319318.5:p.Phe964Leu
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1965T>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2111A>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-595T>C
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe964Leu
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

7-99802346-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802346
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802346
    reference: chr 7
allele count: 9
allele frequency: 7.446632467317558e-5
allele num: 120860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2120T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2725A>T
  hgvsp: ENSP00000377586.2:p.Ser909Cys
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1886A>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2120T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2120T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2899A>T
  hgvsp: ENSP00000319318.5:p.Ser967Cys
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1974A>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2899A>T
  hgvsp: ENSP00000400359.1:p.Ser967Cys
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-586A>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2120T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2120T>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2120T>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19187
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser967Cys
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/7-99802355-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802355
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802355
    reference: chr 7
allele count: 1
allele frequency: 8.288575028181154e-6
allele num: 120648
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2129G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2908C>A
  hgvsp: ENSP00000400359.1:p.Pro970Thr
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2734C>A
  hgvsp: ENSP00000377586.2:p.Pro912Thr
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2129G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2129G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-577C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1895C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2908C>A
  hgvsp: ENSP00000319318.5:p.Pro970Thr
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2129G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1983C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2129G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2129G>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8025
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro970Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/7-99802356-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802356
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802356
    reference: chr 7
allele count: 1
allele frequency: 8.291461452995706e-6
allele num: 120606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2130G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2735C>A
  hgvsp: ENSP00000377586.2:p.Pro912His
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2130G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2130G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2909C>A
  hgvsp: ENSP00000319318.5:p.Pro970His
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2909C>A
  hgvsp: ENSP00000400359.1:p.Pro970His
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2130G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2130G>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-576C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1984C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1896C>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2130G>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro970His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

7-99802366-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802366
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802366
    reference: chr 7
allele count: 1
allele frequency: 8.312137383006666e-6
allele num: 120306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2919G>A
  hgvsp: ENST00000317296.5:c.2919G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2745G>A
  hgvsp: ENST00000394018.2:c.2745G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2140C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2140C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2140C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2140C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2919G>A
  hgvsp: ENST00000426455.1:c.2919G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2140C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1906G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.1994G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2140C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-566G>A
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu973Leu
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

7-99802373-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802373
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802373
    reference: chr 7
allele count: 1
allele frequency: 8.34306691139663e-6
allele num: 119860
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.2001C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2147G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2926C>G
  hgvsp: ENSP00000400359.1:p.Arg976Gly
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2926C>G
  hgvsp: ENSP00000319318.5:p.Arg976Gly
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2147G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2752C>G
  hgvsp: ENSP00000377586.2:p.Arg918Gly
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2147G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2147G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2147G>C
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-559C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1913C>G
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2147G>C
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18590
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg976Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

7-99802373-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802373
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802373
    reference: chr 7
allele count: 2
allele frequency: 1.668613382279326e-5
allele num: 119860
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2926C>T
  hgvsp: ENSP00000400359.1:p.Arg976Cys
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-559C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2147G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1913C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2147G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2147G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2147G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2147G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2926C>T
  hgvsp: ENSP00000319318.5:p.Arg976Cys
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2752C>T
  hgvsp: ENSP00000377586.2:p.Arg918Cys
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2147G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.2001C>T
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg976Cys
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

7-99802374-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802374
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802374
    reference: chr 7
allele count: 2
allele frequency: 1.668502018887443e-5
allele num: 119868
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2927G>A
  hgvsp: ENSP00000400359.1:p.Arg976His
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.2002G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2148C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2753G>A
  hgvsp: ENSP00000377586.2:p.Arg918His
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2148C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2148C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-558G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1914G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2148C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2927G>A
  hgvsp: ENSP00000319318.5:p.Arg976His
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2148C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2148C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18683
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg976His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff

7-99802381-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802381
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802381
    reference: chr 7
allele count: 1
allele frequency: 8.379279717115517e-6
allele num: 119342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2155G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2155G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-551C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2760C>T
  hgvsp: ENST00000394018.2:c.2760C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2155G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2155G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2934C>T
  hgvsp: ENST00000317296.5:c.2934C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2155G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.2009C>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2934C>T
  hgvsp: ENST00000426455.1:c.2934C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2155G>A
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1921C>T
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7069
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu978Leu
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff

10-27830577-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27830577
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 27830578
    reference: chr 10
allele count: 1
allele frequency: 9.33009889904833e-5
allele num: 10718
alternate allele: TC
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099246
  ensembl protein: ENSP00000349415
  ensembl transcript: ENST00000356940
  gene symbol: RAB18
  hgvsc: ENST00000356940.6:c.*3599dupC
  variant of: http://identifiers.org/hgnc/14244
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2710
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 188
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

10-27830591-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27830591
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 27830591
    reference: chr 10
allele count: 1
allele frequency: 9.298865538404315e-5
allele num: 10754
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099246
  ensembl protein: ENSP00000349415
  ensembl transcript: ENST00000356940
  gene symbol: RAB18
  hgvsc: ENST00000356940.6:c.*3611C>T
  variant of: http://identifiers.org/hgnc/14244
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2527
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 190
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 92
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 118
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

10-27830613-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27830613
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 27830614
    reference: chr 10
allele count: 7
allele frequency: 6.53716847217034e-4
allele num: 10708
alternate allele: GT
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099246
  ensembl protein: ENSP00000349415
  ensembl transcript: ENST00000356940
  gene symbol: RAB18
  hgvsc: ENST00000356940.6:c.*3641dupT
  variant of: http://identifiers.org/hgnc/14244
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 3
  allele frequency: 4.010695187165775e-4
  allele num: 7480
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 118
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 190
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

7-99802382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802382
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802382
    reference: chr 7
allele count: 2
allele frequency: 1.675715530531537e-5
allele num: 119352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2156C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2156C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.2010G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2156C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2156C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1922G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2761G>A
  hgvsp: ENSP00000377586.2:p.Val921Met
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2935G>A
  hgvsp: ENSP00000400359.1:p.Val979Met
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2935G>A
  hgvsp: ENSP00000319318.5:p.Val979Met
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2156C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-550G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2156C>T
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24954
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val979Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

7-99802384-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802384
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802384
    reference: chr 7
allele count: 33
allele frequency: 2.767202777265333e-4
allele num: 119254
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2937G>C
  hgvsp: ENST00000426455.1:c.2937G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1924G>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2763G>C
  hgvsp: ENST00000394018.2:c.2763G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2158C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2937G>C
  hgvsp: ENST00000317296.5:c.2937G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-548G>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2158C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.2012G>C
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2158C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2158C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2158C>G
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2158C>G
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24643
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18769
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Val979Val
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

7-99802385-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802385
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802385
    reference: chr 7
allele count: 1
allele frequency: 8.388980235562565e-6
allele num: 119204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000319318
  ensembl transcript: ENST00000317296
  gene symbol: STAG3
  hgvsc: ENST00000317296.5:c.2938G>A
  hgvsp: ENSP00000319318.5:p.Val980Ile
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.2013G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160844
  ensembl protein: ENSP00000389760
  ensembl transcript: ENST00000436886
  gene symbol: GATS
  hgvsc: ENST00000436886.2:c.*49-2159C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2159C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000440058
  gene symbol: GATS
  hgvsc: ENST00000440058.1:n.192-2159C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000437485
  gene symbol: GATS
  hgvsc: ENST00000437485.1:n.130-2159C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000543273
  gene symbol: GATS
  hgvsc: ENST00000543273.1:n.665-2159C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000491498
  gene symbol: STAG3
  hgvsc: ENST00000491498.1:n.1925G>A
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000400359
  ensembl transcript: ENST00000426455
  gene symbol: STAG3
  hgvsc: ENST00000426455.1:c.2938G>A
  hgvsp: ENSP00000400359.1:p.Val980Ile
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066923
  ensembl protein: ENSP00000377586
  ensembl transcript: ENST00000394018
  gene symbol: STAG3
  hgvsc: ENST00000394018.2:c.2764G>A
  hgvsp: ENSP00000377586.2:p.Val922Ile
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000414997
  gene symbol: GATS
  hgvsc: ENST00000414997.1:n.159-2159C>T
  variant of: http://identifiers.org/hgnc/29954
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000496157
  gene symbol: STAG3
  hgvsc: ENST00000496157.1:n.2695-547G>A
  variant of: http://identifiers.org/hgnc/11356
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18832
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val980Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

7-99802385-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99802385
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99802385
    reference: chr 7
allele count: 1
allele frequency: 8.388980235562565e-6
allele num: 119204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000066923
  ensembl transcript: ENST00000440830
  gene symbol: STAG3
  hgvsc: ENST00000440830.1:n.2013G>T
  variant of: http://identifiers.org/hgnc/11356
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239521
  ensembl transcript: ENST00000454084
  gene symbol: GATS
  hgvsc: ENST00000454084.1:n.740-2159C>A
  variant of: http://identifiers.org/hgnc/29954
canonical: true
consequence: missense
filter: PASS
hgvs: p.Val980Phe
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 4420
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 226
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3201
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4339
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7797
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8516
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

QD
type: SiteQuality
SIO_000300: 1.076e1

FS
type: SiteQuality
SIO_000300: 4.123e0

DP
type: SiteQuality
SIO_000300: 1.834488e6

VQSLOD
type: SiteQuality
SIO_000300: 9.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

GenotypeDepth
all individuals: 2349
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 227
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4339
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3201
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8516
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7797
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29885
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.91e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

VQSLOD
type: SiteQuality
SIO_000300: 5.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 1.218e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.615e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

DP
type: SiteQuality
SIO_000300: 1.834378e6

GenotypeDepth
all individuals: 299
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 82
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3201
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29885
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7797
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8516
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4339
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.949e1

QD
type: SiteQuality
SIO_000300: 1.218e1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

DP
type: SiteQuality
SIO_000300: 1.834378e6

FS
type: SiteQuality
SIO_000300: 2.615e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.36e-1

GenotypeDepth
all individuals: 464
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 249
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8515
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7797
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3199
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4336
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3529
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29876
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

DP
type: SiteQuality
SIO_000300: 1.834338e6

QD
type: SiteQuality
SIO_000300: 1.244e1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

FS
type: SiteQuality
SIO_000300: 1.118e0

MQRankSum
type: SiteQuality
SIO_000300: -3.03e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeDepth
all individuals: 331
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 136
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3199
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4335
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8517
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29884
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3530
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7797
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.71e-1

FS
type: SiteQuality
SIO_000300: 4.311e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.382e1

MQ
type: SiteQuality
SIO_000300: 5.937e1

DP
type: SiteQuality
SIO_000300: 1.834349e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.16e-1

GenotypeDepth
all individuals: 249
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4335
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3199
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8516
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3529
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7795
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 29877
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.257e0

VQSLOD
type: SiteQuality
SIO_000300: 3.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.69e-1

QD
type: SiteQuality
SIO_000300: 1.439e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.834356e6

MQ
type: SiteQuality
SIO_000300: 5.993e1

GenotypeDepth
all individuals: 9989
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3199
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29872
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7799
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4334
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8510
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3524
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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allele frequency: 5.994305409860632e-5
allele num: 66730
num of homozygotes: 0

Other
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East Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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MQRankSum
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ClippingRankSum
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
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European (Finnish)
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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allele frequency: 4.495729057395475e-5
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FS
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VQSLOD
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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African
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Latino
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South Asian
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European (Non-Finnish)
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ClippingRankSum
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MQ
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MQRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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FS
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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Other
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Latino
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South Asian
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African
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European (Non-Finnish)
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DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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FS
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QD
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ReadPosRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
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African
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South Asian
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European (Non-Finnish)
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East Asian
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BaseQRankSum
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FS
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QD
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VQSLOD
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MQ
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ClippingRankSum
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MQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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European (Non-Finnish)
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Latino
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East Asian
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Other
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South Asian
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European (Finnish)
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QD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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DP
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FS
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ReadPosRankSum
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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BaseQRankSum
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DP
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ClippingRankSum
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QD
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InbreedingCoeff
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MQ
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VQSLOD
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FS
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
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Other
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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InbreedingCoeff
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MQ
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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Other
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African
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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QD
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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FS
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ReadPosRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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South Asian
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African
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European (Non-Finnish)
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East Asian
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QD
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MQRankSum
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VQSLOD
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FS
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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Other
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African
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East Asian
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European (Finnish)
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VQSLOD
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DP
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FS
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66424
num of homozygotes: 0

South Asian
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Other
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Latino
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African
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East Asian
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European (Finnish)
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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FS
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DP
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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South Asian
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QD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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FS
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BaseQRankSum
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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Other
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East Asian
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Latino
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.746615e6

VQSLOD
type: SiteQuality
SIO_000300: 8.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.629e0

QD
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SIO_000300: 9.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.69e-1

GenotypeDepth
all individuals: 1404
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7054
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.747640685075148e-4
allele num: 11444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66296
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.77e-1

BaseQRankSum
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DP
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SIO_000300: 1.745698e6

FS
type: SiteQuality
SIO_000300: 3.369e0

MQRankSum
type: SiteQuality
SIO_000300: 7.64e-1

QD
type: SiteQuality
SIO_000300: 1.366e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 5.947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.739730816290858e-5
allele num: 11442
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66232
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 3.0e-3

MQRankSum
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ReadPosRankSum
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SIO_000300: 4.65e-1

VQSLOD
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QD
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SIO_000300: 1.304e1

BaseQRankSum
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SIO_000300: -3.958e0

DP
type: SiteQuality
SIO_000300: 1.745097e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 915
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65862
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.904724716907458e-4
allele num: 10244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15820
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 2.43e0

DP
type: SiteQuality
SIO_000300: 1.591183e6

ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

BaseQRankSum
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SIO_000300: -5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.43e-1

QD
type: SiteQuality
SIO_000300: 1.454e1

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 705
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65910
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

DP
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SIO_000300: 1.595778e6

VQSLOD
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SIO_000300: 5.77e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 2.059e0

InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

QD
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ReadPosRankSum
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SIO_000300: 8.33e-1

MQRankSum
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ClippingRankSum
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SIO_000300: -7.44e-1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15878
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65940
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10252
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East Asian
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allele count: 11
allele frequency: 1.282051282051282e-3
allele num: 8580
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ClippingRankSum
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SIO_000300: -3.55e-1

ReadPosRankSum
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FS
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DP
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MQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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BaseQRankSum
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MQ
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SIO_000300: 5.932e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65964
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15962
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African
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allele frequency: 5.845674201091193e-4
allele num: 10264
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Other
type: Population
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European (Finnish)
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InbreedingCoeff
type: SiteQuality
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QD
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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DP
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.75e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.251562890722681e-5
allele num: 15996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
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ReadPosRankSum
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QD
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VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

GenotypeDepth
all individuals: 44
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37157
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8766
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3056
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2996
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16072
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66032
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.61e-1

QD
type: SiteQuality
SIO_000300: 9.77e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.622361e6

FS
type: SiteQuality
SIO_000300: 1.203e0

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-1

GenotypeDepth
all individuals: 7
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 382
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3021
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37480
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8811
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3061
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.716284492809949e-5
allele num: 10292
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.629637e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.621e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.411e0

MQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.206e1

GenotypeDepth
all individuals: 655
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3097
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2417
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8955
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38460
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3064
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.13421666053245e-5
allele num: 16302
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.860000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.086e1

DP
type: SiteQuality
SIO_000300: 1.641166e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.71e-1

GenotypeDepth
all individuals: 488
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3059
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8964
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38538
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017592564651921e-5
allele num: 66278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 1.307e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.76e-1

QD
type: SiteQuality
SIO_000300: 1.407e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.87e-1

DP
type: SiteQuality
SIO_000300: 1.643981e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeDepth
all individuals: 44
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 38702
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variant carriers: 0

GenotypeQuality
all individuals: 707
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variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8979
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1652
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3097
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2417
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 706
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508068164681044e-5
allele num: 66310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

QD
type: SiteQuality
SIO_000300: 1.059e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.428e0

DP
type: SiteQuality
SIO_000300: 1.646728e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

FS
type: SiteQuality
SIO_000300: 8.307e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.642e-1

GenotypeDepth
all individuals: 49
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2146
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8993
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
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variant carriers: 0

GenotypeQuality
all individuals: 38857
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variant carriers: 0

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 193
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variant carriers: 0

GenotypeQuality
all individuals: 1654
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 399
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variant carriers: 0

GenotypeQuality
all individuals: 3072
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 3093
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2415
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 708
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507658907248824e-5
allele num: 66328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.647902e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.046e1

VQSLOD
type: SiteQuality
SIO_000300: -2.833e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 281
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 2419
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3077
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variant carriers: 0

GenotypeQuality
all individuals: 114
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GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 260
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variant carriers: 0

GenotypeQuality
all individuals: 9015
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
all individuals: 6
bin: 1.75e1
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GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 39228
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variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00960062599693e-5
allele num: 66454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.61e0

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

FS
type: SiteQuality
SIO_000300: 5.125e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.07e-1

QD
type: SiteQuality
SIO_000300: 9.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.653e0

DP
type: SiteQuality
SIO_000300: 1.654392e6

MQ
type: SiteQuality
SIO_000300: 5.804e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.47e-2

GenotypeDepth
all individuals: 41
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 34
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GenotypeQuality
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GenotypeQuality
all individuals: 54
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GenotypeQuality
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GenotypeQuality
all individuals: 4
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66490
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African
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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FS
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QD
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ReadPosRankSum
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503759398496241e-5
allele num: 66500
num of homozygotes: 0

African
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Other
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South Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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BaseQRankSum
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ReadPosRankSum
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MQ
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DP
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QD
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66504
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Other
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African
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Latino
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East Asian
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South Asian
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MQ
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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DP
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FS
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

African
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allele count: 8
allele frequency: 7.710100231303007e-4
allele num: 10376
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.005981903988938e-5
allele num: 66534
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BaseQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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SIO_000300: 1.1e0

DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66538
num of homozygotes: 0

European (Finnish)
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East Asian
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MQRankSum
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QD
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ClippingRankSum
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DP
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BaseQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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FS
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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European (Non-Finnish)
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Latino
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East Asian
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African
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FS
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MQRankSum
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QD
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQ
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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Other
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Latino
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East Asian
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European (Non-Finnish)
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African
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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QD
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502133028901039e-5
allele num: 66572
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

QD
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SIO_000300: 1.119e1

FS
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SIO_000300: 9.923e0

DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -3.142e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.77e-1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.506263706552107e-5
allele num: 66574
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -2.73e0

InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
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FS
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MQRankSum
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DP
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VQSLOD
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ClippingRankSum
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SIO_000300: 8.400000000000001e-2

ReadPosRankSum
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SIO_000300: -6.0e-3

QD
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SIO_000300: 1.124e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501636784094663e-5
allele num: 66594
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 2.16e-1

DP
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SIO_000300: 1.658058e6

ReadPosRankSum
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SIO_000300: 1.66e0

FS
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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QD
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VQSLOD
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SIO_000300: -6.727e-1

MQ
type: SiteQuality
SIO_000300: 5.895e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

MQRankSum
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SIO_000300: -2.6e-2

ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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QD
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BaseQRankSum
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FS
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SIO_000300: 1.0348e1

MQ
type: SiteQuality
SIO_000300: 5.914e1

DP
type: SiteQuality
SIO_000300: 1.657581e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele num: 8640
num of homozygotes: 0

South Asian
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allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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VQSLOD
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MQ
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MQRankSum
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BaseQRankSum
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FS
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DP
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QD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele num: 906
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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allele num: 66612
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Latino
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QD
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InbreedingCoeff
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MQ
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FS
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DP
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele frequency: 1.213592233009709e-4
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Latino
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East Asian
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European (Non-Finnish)
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African
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Other
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BaseQRankSum
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QD
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InbreedingCoeff
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FS
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ClippingRankSum
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DP
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
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allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 55
allele frequency: 8.266698731437504e-4
allele num: 66532
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

Other
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allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
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allele frequency: 7.295719844357977e-4
allele num: 16448
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VQSLOD
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SIO_000300: 5.66e0

DP
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SIO_000300: 1.651402e6

MQ
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SIO_000300: 5.952e1

BaseQRankSum
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ReadPosRankSum
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SIO_000300: 5.37e-1

FS
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ClippingRankSum
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SIO_000300: -5.620000000000001e-1

MQRankSum
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SIO_000300: 4.09e-1

InbreedingCoeff
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SIO_000300: 1.22e-2

QD
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SIO_000300: 1.314e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 8.691117677733357e-4
allele num: 11506
num of homozygotes: 0

East Asian
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allele frequency: 1.158748551564311e-3
allele num: 8630
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.005620510354363e-5
allele num: 66542
num of homozygotes: 0

BaseQRankSum
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SIO_000300: 6.81e-1

MQ
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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SIO_000300: -1.7e-2

ReadPosRankSum
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SIO_000300: 2.97e-1

InbreedingCoeff
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SIO_000300: 0.0e0

QD
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SIO_000300: 1.418e1

DP
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SIO_000300: 1.649073e6

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66542
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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East Asian
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ReadPosRankSum
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SIO_000300: 2.97e-1

MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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FS
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MQ
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ClippingRankSum
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SIO_000300: -1.7e-2

BaseQRankSum
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SIO_000300: 6.81e-1

QD
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SIO_000300: 1.418e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8632
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.502990951994469e-5
allele num: 66534
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.82e-1

DP
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SIO_000300: 1.645425e6

MQRankSum
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SIO_000300: 1.06e0

ClippingRankSum
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SIO_000300: -8.070000000000001e-1

FS
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InbreedingCoeff
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VQSLOD
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MQ
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SIO_000300: 5.892e1

BaseQRankSum
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SIO_000300: 4.29e0

QD
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SIO_000300: 1.855e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 8
allele frequency: 7.730962504831851e-4
allele num: 10348
num of homozygotes: 0

Latino
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allele num: 11490
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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Other
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MQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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African
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FS
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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MQRankSum
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DP
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InbreedingCoeff
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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South Asian
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Other
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African
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European (Non-Finnish)
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East Asian
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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DP
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VQSLOD
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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FS
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BaseQRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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DP
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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African
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European (Finnish)
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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QD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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DP
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MQRankSum
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MQ
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Non-Finnish)
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Latino
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East Asian
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European (Finnish)
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South Asian
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MQRankSum
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InbreedingCoeff
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DP
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MQ
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6498
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Latino
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African
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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ReadPosRankSum
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MQ
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QD
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

Other
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East Asian
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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MQRankSum
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VQSLOD
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MQ
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DP
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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FS
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InbreedingCoeff
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South Asian
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Latino
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Other
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East Asian
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BaseQRankSum
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DP
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MQ
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QD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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European (Non-Finnish)
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European (Finnish)
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South Asian
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East Asian
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VQSLOD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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QD
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ClippingRankSum
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MQ
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DP
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ReadPosRankSum
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European (Finnish)
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East Asian
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Latino
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European (Non-Finnish)
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ReadPosRankSum
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QD
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VQSLOD
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FS
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DP
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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South Asian
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FS
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QD
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VQSLOD
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DP
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7259
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

East Asian
type: Population
allele count: 33
allele frequency: 3.855140186915888e-3
allele num: 8560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.869e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.560605e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 1.241e1

GenotypeDepth
all individuals: 50
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2668
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2269
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1439
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35397
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521838380763963e-5
allele num: 65710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 1.556697e6

QD
type: SiteQuality
SIO_000300: 9.32e0