http://identifiers.org/exac.variant/5-137627824-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137627824
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137627824
    reference: chr 5
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.487-19G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.397-19G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.397-19G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.526-19G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.616-19G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.526-19G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.616-19G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.616-19G>T
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

5-137627827-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137627827
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137627827
    reference: chr 5
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.526-22G>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.526-22G>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.616-22G>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.397-22G>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.616-22G>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.487-22G>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.616-22G>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.397-22G>C
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8077
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

5-137627827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137627827
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137627827
    reference: chr 5
allele count: 4
allele frequency: 3.313123281317298e-5
allele num: 120732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.616-22G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.487-22G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.526-22G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.526-22G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.616-22G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.616-22G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.397-22G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.397-22G>A
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8077
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37400
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD

5-137627828-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137627828
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137627828
    reference: chr 5
allele count: 2
allele frequency: 1.65694591728526e-5
allele num: 120704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.397-23G>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.616-23G>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.616-23G>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.487-23G>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.526-23G>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.616-23G>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.397-23G>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.526-23G>C
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2748
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ

5-137627829-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137627829
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137627829
    reference: chr 5
allele count: 1
allele frequency: 8.285827919925758e-6
allele num: 120688
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.397-24A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.526-24A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.616-24A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.526-24A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.397-24A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.616-24A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.487-24A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.616-24A>G
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5937
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7754
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37402
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

5-137627844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137627844
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137627844
    reference: chr 5
allele count: 2
allele frequency: 1.659007581664648e-5
allele num: 120554
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.616-39G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.526-39G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.526-39G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.397-39G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.397-39G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.616-39G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.616-39G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.487-39G>A
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1799
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

5-137627848-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137627848
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137627848
    reference: chr 5
allele count: 1
allele frequency: 8.2936619835122e-6
allele num: 120574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.397-43A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.397-43A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.616-43A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.616-43A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.616-43A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.526-43A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.526-43A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.487-43A>T
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37399
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

5-137627848-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137627848
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137627848
    reference: chr 5
allele count: 1
allele frequency: 8.2936619835122e-6
allele num: 120574
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.526-43A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.526-43A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.616-43A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.487-43A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.397-43A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.616-43A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.397-43A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.616-43A>G
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2317
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

5-137627852-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137627852
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137627852
    reference: chr 5
allele count: 1
allele frequency: 8.298892927683448e-6
allele num: 120498
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.526-47A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.397-47A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.526-47A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.397-47A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.616-47A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.616-47A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.616-47A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.487-47A>G
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4482
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-137627854-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137627854
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137627854
    reference: chr 5
allele count: 1
allele frequency: 8.301510874979247e-6
allele num: 120460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.616-49A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.526-49A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.526-49A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.616-49A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.616-49A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.487-49A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.397-49A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.397-49A>G
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum

5-137654858-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654858
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654858
    reference: chr 5
allele count: 1
allele frequency: 8.492569002123141e-6
allele num: 117750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.615+50T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.615+50T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.615+50T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.396+50T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.486+50T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.396+50T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.525+50T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.525+50T>C
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10663
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

5-137654860-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654860
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654860
    reference: chr 5
allele count: 1
allele frequency: 8.487523340689187e-6
allele num: 117820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.525+48T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.615+48T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.525+48T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.615+48T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.396+48T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.615+48T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.396+48T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.486+48T>A
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15347
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34521
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10672
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/5-137654868-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654868
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654868
    reference: chr 5
allele count: 6
allele frequency: 5.085693942938514e-5
allele num: 117978
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.486+40T>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.615+40T>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.525+40T>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.615+40T>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.396+40T>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.615+40T>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.396+40T>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.525+40T>G
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35081
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

5-137654887-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654887
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654887
    reference: chr 5
allele count: 2
allele frequency: 1.685005139265675e-5
allele num: 118694
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.615+21A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.525+21A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.615+21A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.486+21A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.615+21A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.396+21A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.525+21A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.396+21A>G
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

5-137654891-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654891
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654891
    reference: chr 5
allele count: 1
allele frequency: 8.406328283932143e-6
allele num: 118958
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.525+17T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.396+17T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.615+17T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.486+17T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.615+17T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.615+17T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.396+17T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.525+17T>C
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26360
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37170
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

5-137654893-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654893
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654893
    reference: chr 5
allele count: 1
allele frequency: 8.398138972403716e-6
allele num: 119074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.615+15G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.525+15G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.486+15G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.396+15G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.615+15G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.615+15G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.396+15G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.525+15G>A
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8787
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15407
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3592
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

5-137654896-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654896
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654896
    reference: chr 5
allele count: 1
allele frequency: 8.362602441879913e-6
allele num: 119580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.615+12T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.486+12T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.525+12T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.396+12T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.615+12T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.525+12T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.615+12T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.396+12T>A
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

5-137654897-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654897
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654897
    reference: chr 5
allele count: 1
allele frequency: 8.357989402069439e-6
allele num: 119646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.615+11C>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.615+11C>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.525+11C>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.486+11C>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.615+11C>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.525+11C>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.396+11C>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.396+11C>A
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3592
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

5-137654909-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654909
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654909
    reference: chr 5
allele count: 2
allele frequency: 1.659503144758459e-5
allele num: 120518
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.614A>C
  hgvsp: ENSP00000424795.1:p.Lys205Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.614A>C
  hgvsp: ENSP00000427251.1:p.Lys205Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.524A>C
  hgvsp: ENSP00000348898.3:p.Lys175Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.614A>C
  hgvsp: ENSP00000321656.6:p.Lys205Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.485A>C
  hgvsp: ENSP00000349821.3:p.Lys162Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.524A>C
  hgvsp: ENSP00000425470.1:p.Lys175Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.395A>C
  hgvsp: ENSP00000392631.2:p.Lys132Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.395A>C
  hgvsp: ENSP00000345205.3:p.Lys132Thr
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys205Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum

5-137654912-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654912
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654912
    reference: chr 5
allele count: 2
allele frequency: 1.657495193263939e-5
allele num: 120664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.611C>T
  hgvsp: ENSP00000424795.1:p.Ala204Val
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.611C>T
  hgvsp: ENSP00000427251.1:p.Ala204Val
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.521C>T
  hgvsp: ENSP00000348898.3:p.Ala174Val
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.611C>T
  hgvsp: ENSP00000321656.6:p.Ala204Val
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.392C>T
  hgvsp: ENSP00000392631.2:p.Ala131Val
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.521C>T
  hgvsp: ENSP00000425470.1:p.Ala174Val
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.392C>T
  hgvsp: ENSP00000345205.3:p.Ala131Val
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.482C>T
  hgvsp: ENSP00000349821.3:p.Ala161Val
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10972
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala204Val
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

5-137654937-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654937
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654937
    reference: chr 5
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.496G>C
  hgvsp: ENSP00000348898.3:p.Glu166Gln
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.586G>C
  hgvsp: ENSP00000321656.6:p.Glu196Gln
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.496G>C
  hgvsp: ENSP00000425470.1:p.Glu166Gln
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.367G>C
  hgvsp: ENSP00000392631.2:p.Glu123Gln
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.367G>C
  hgvsp: ENSP00000345205.3:p.Glu123Gln
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.457G>C
  hgvsp: ENSP00000349821.3:p.Glu153Gln
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.586G>C
  hgvsp: ENSP00000427251.1:p.Glu196Gln
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.586G>C
  hgvsp: ENSP00000424795.1:p.Glu196Gln
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3588
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu196Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

5-137654939-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654939
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654939
    reference: chr 5
allele count: 2
allele frequency: 1.648750247312537e-5
allele num: 121304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.584T>A
  hgvsp: ENSP00000424795.1:p.Met195Lys
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.584T>A
  hgvsp: ENSP00000321656.6:p.Met195Lys
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.365T>A
  hgvsp: ENSP00000392631.2:p.Met122Lys
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.584T>A
  hgvsp: ENSP00000427251.1:p.Met195Lys
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.494T>A
  hgvsp: ENSP00000425470.1:p.Met165Lys
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.494T>A
  hgvsp: ENSP00000348898.3:p.Met165Lys
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.365T>A
  hgvsp: ENSP00000345205.3:p.Met122Lys
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.455T>A
  hgvsp: ENSP00000349821.3:p.Met152Lys
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11051
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met195Lys
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/5-137654942-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654942
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654942
    reference: chr 5
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.362T>G
  hgvsp: ENSP00000392631.2:p.Leu121Ter
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.362T>G
  hgvsp: ENSP00000345205.3:p.Leu121Ter
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.581T>G
  hgvsp: ENSP00000427251.1:p.Leu194Ter
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.452T>G
  hgvsp: ENSP00000349821.3:p.Leu151Ter
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.491T>G
  hgvsp: ENSP00000425470.1:p.Leu164Ter
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.581T>G
  hgvsp: ENSP00000321656.6:p.Leu194Ter
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.491T>G
  hgvsp: ENSP00000348898.3:p.Leu164Ter
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.581T>G
  hgvsp: ENSP00000424795.1:p.Leu194Ter
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2081
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu194Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

5-137654966-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654966
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654966
    reference: chr 5
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.428A>C
  hgvsp: ENSP00000349821.3:p.Gln143Pro
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.467A>C
  hgvsp: ENSP00000425470.1:p.Gln156Pro
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.338A>C
  hgvsp: ENSP00000392631.2:p.Gln113Pro
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.557A>C
  hgvsp: ENSP00000427251.1:p.Gln186Pro
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.557A>C
  hgvsp: ENSP00000424795.1:p.Gln186Pro
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.467A>C
  hgvsp: ENSP00000348898.3:p.Gln156Pro
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.338A>C
  hgvsp: ENSP00000345205.3:p.Gln113Pro
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.557A>C
  hgvsp: ENSP00000321656.6:p.Gln186Pro
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln186Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD

5-137654968-GTCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654968
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654965
    reference: chr 5
allele count: 2
allele frequency: 1.647962294622699e-5
allele num: 121362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.333_335delAGA
  hgvsp: ENSP00000345205.3:p.Glu111del
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.462_464delAGA
  hgvsp: ENSP00000348898.3:p.Glu154del
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.552_554delAGA
  hgvsp: ENSP00000321656.6:p.Glu184del
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.552_554delAGA
  hgvsp: ENSP00000427251.1:p.Glu184del
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.423_425delAGA
  hgvsp: ENSP00000349821.3:p.Glu141del
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.462_464delAGA
  hgvsp: ENSP00000425470.1:p.Glu154del
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.552_554delAGA
  hgvsp: ENSP00000424795.1:p.Glu184del
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.333_335delAGA
  hgvsp: ENSP00000392631.2:p.Glu111del
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu184del
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: GTCT
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

5-137654977-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654977
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654977
    reference: chr 5
allele count: 12
allele frequency: 9.888262632255513e-5
allele num: 121356
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.546A>G
  hgvsp: ENST00000323760.6:c.546A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.327A>G
  hgvsp: ENST00000348983.3:c.327A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.456A>G
  hgvsp: ENST00000356505.3:c.456A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.456A>G
  hgvsp: ENST00000514555.1:c.456A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.546A>G
  hgvsp: ENST00000503022.1:c.546A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.417A>G
  hgvsp: ENST00000357274.3:c.417A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.327A>G
  hgvsp: ENST00000415130.2:c.327A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.546A>G
  hgvsp: ENST00000513970.1:c.546A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 11050
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu182Leu
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

5-137654979-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654979
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654979
    reference: chr 5
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.325C>T
  hgvsp: ENST00000348983.3:c.325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.544C>T
  hgvsp: ENST00000323760.6:c.544C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.325C>T
  hgvsp: ENST00000415130.2:c.325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.415C>T
  hgvsp: ENST00000357274.3:c.415C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.544C>T
  hgvsp: ENST00000513970.1:c.544C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.454C>T
  hgvsp: ENST00000356505.3:c.454C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.544C>T
  hgvsp: ENST00000503022.1:c.544C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.454C>T
  hgvsp: ENST00000514555.1:c.454C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3575
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu182Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-137654980-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654980
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654980
    reference: chr 5
allele count: 191
allele frequency: 1.573881802300669e-3
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.543C>T
  hgvsp: ENST00000503022.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.453C>T
  hgvsp: ENST00000514555.1:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.324C>T
  hgvsp: ENST00000415130.2:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.324C>T
  hgvsp: ENST00000348983.3:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.453C>T
  hgvsp: ENST00000356505.3:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.543C>T
  hgvsp: ENST00000323760.6:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.543C>T
  hgvsp: ENST00000513970.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.414C>T
  hgvsp: ENST00000357274.3:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 15522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 27298
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10187
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3611
  bin: 9.75e1
  variant carriers: 191
hgvs: p.Asn181Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

5-137654983-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654983
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654983
    reference: chr 5
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.450A>G
  hgvsp: ENST00000356505.3:c.450A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.411A>G
  hgvsp: ENST00000357274.3:c.411A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.540A>G
  hgvsp: ENST00000323760.6:c.540A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.540A>G
  hgvsp: ENST00000503022.1:c.540A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.450A>G
  hgvsp: ENST00000514555.1:c.450A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.321A>G
  hgvsp: ENST00000348983.3:c.321A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.321A>G
  hgvsp: ENST00000415130.2:c.321A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.540A>G
  hgvsp: ENST00000513970.1:c.540A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11072
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro180Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

5-137654992-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654992
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654992
    reference: chr 5
allele count: 4
allele frequency: 3.296467834715103e-5
allele num: 121342
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.531T>C
  hgvsp: ENST00000323760.6:c.531T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.402T>C
  hgvsp: ENST00000357274.3:c.402T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.441T>C
  hgvsp: ENST00000514555.1:c.441T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.312T>C
  hgvsp: ENST00000348983.3:c.312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.531T>C
  hgvsp: ENST00000503022.1:c.531T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.531T>C
  hgvsp: ENST00000513970.1:c.531T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.312T>C
  hgvsp: ENST00000415130.2:c.312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.441T>C
  hgvsp: ENST00000356505.3:c.441T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp177Asp
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

5-137654999-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137654999
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137654999
    reference: chr 5
allele count: 2
allele frequency: 1.648288252649623e-5
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.524A>T
  hgvsp: ENSP00000321656.6:p.Lys175Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.524A>T
  hgvsp: ENSP00000427251.1:p.Lys175Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.434A>T
  hgvsp: ENSP00000348898.3:p.Lys145Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.395A>T
  hgvsp: ENSP00000349821.3:p.Lys132Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.305A>T
  hgvsp: ENSP00000392631.2:p.Lys102Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.305A>T
  hgvsp: ENSP00000345205.3:p.Lys102Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.524A>T
  hgvsp: ENSP00000424795.1:p.Lys175Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.434A>T
  hgvsp: ENSP00000425470.1:p.Lys145Ile
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys175Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

5-137655005-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137655005
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137655005
    reference: chr 5
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.299T>C
  hgvsp: ENSP00000392631.2:p.Val100Ala
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.518T>C
  hgvsp: ENSP00000321656.6:p.Val173Ala
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.518T>C
  hgvsp: ENSP00000424795.1:p.Val173Ala
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.389T>C
  hgvsp: ENSP00000349821.3:p.Val130Ala
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.428T>C
  hgvsp: ENSP00000425470.1:p.Val143Ala
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.299T>C
  hgvsp: ENSP00000345205.3:p.Val100Ala
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.428T>C
  hgvsp: ENSP00000348898.3:p.Val143Ala
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.518T>C
  hgvsp: ENSP00000427251.1:p.Val173Ala
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val173Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

5-137655011-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137655011
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137655011
    reference: chr 5
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.293C>T
  hgvsp: ENSP00000345205.3:p.Thr98Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.383C>T
  hgvsp: ENSP00000349821.3:p.Thr128Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.512C>T
  hgvsp: ENSP00000427251.1:p.Thr171Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.422C>T
  hgvsp: ENSP00000348898.3:p.Thr141Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.512C>T
  hgvsp: ENSP00000321656.6:p.Thr171Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.293C>T
  hgvsp: ENSP00000392631.2:p.Thr98Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.512C>T
  hgvsp: ENSP00000424795.1:p.Thr171Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.422C>T
  hgvsp: ENSP00000425470.1:p.Thr141Ile
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2319
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr171Ile
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

5-137655012-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137655012
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137655012
    reference: chr 5
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.292A>T
  hgvsp: ENSP00000345205.3:p.Thr98Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.511A>T
  hgvsp: ENSP00000427251.1:p.Thr171Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.511A>T
  hgvsp: ENSP00000424795.1:p.Thr171Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.421A>T
  hgvsp: ENSP00000425470.1:p.Thr141Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.382A>T
  hgvsp: ENSP00000349821.3:p.Thr128Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.421A>T
  hgvsp: ENSP00000348898.3:p.Thr141Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.292A>T
  hgvsp: ENSP00000392631.2:p.Thr98Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.511A>T
  hgvsp: ENSP00000321656.6:p.Thr171Ser
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2319
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39971
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11059
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr171Ser
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum

5-137655059-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137655059
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137655059
    reference: chr 5
allele count: 1
allele frequency: 8.304544246611745e-6
allele num: 120416
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.335A>G
  hgvsp: ENSP00000349821.3:p.Asn112Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.374A>G
  hgvsp: ENSP00000348898.3:p.Asn125Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.245A>G
  hgvsp: ENSP00000392631.2:p.Asn82Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.245A>G
  hgvsp: ENSP00000345205.3:p.Asn82Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.464A>G
  hgvsp: ENSP00000321656.6:p.Asn155Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.464A>G
  hgvsp: ENSP00000427251.1:p.Asn155Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.374A>G
  hgvsp: ENSP00000425470.1:p.Asn125Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.464A>G
  hgvsp: ENSP00000424795.1:p.Asn155Ser
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39043
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn155Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

5-137655063-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137655063
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137655063
    reference: chr 5
allele count: 1
allele frequency: 8.333055564814507e-6
allele num: 120004
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.460G>C
  hgvsp: ENSP00000424795.1:p.Asp154His
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.370G>C
  hgvsp: ENSP00000425470.1:p.Asp124His
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.241G>C
  hgvsp: ENSP00000345205.3:p.Asp81His
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.331G>C
  hgvsp: ENSP00000349821.3:p.Asp111His
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.370G>C
  hgvsp: ENSP00000348898.3:p.Asp124His
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.460G>C
  hgvsp: ENSP00000427251.1:p.Asp154His
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.460G>C
  hgvsp: ENSP00000321656.6:p.Asp154His
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.241G>C
  hgvsp: ENSP00000392631.2:p.Asp81His
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10711
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp154His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS

5-137655066-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137655066
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137655066
    reference: chr 5
allele count: 1
allele frequency: 8.365540664893172e-6
allele num: 119538
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.460-3C>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.370-3C>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.370-3C>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.241-3C>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.331-3C>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.460-3C>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.460-3C>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.241-3C>G
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10603
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
hgvs: c.460-3C>G
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

5-137655076-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137655076
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137655076
    reference: chr 5
allele count: 1
allele frequency: 8.602890571231935e-6
allele num: 116240
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.241-13A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.331-13A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.460-13A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.370-13A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.460-13A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.370-13A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.241-13A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.460-13A>G
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9250
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6685
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP

5-137655078-GACA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137655078
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137655075
    reference: chr 5
allele count: 2
allele frequency: 1.726459721694693e-5
allele num: 115844
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.370-18_370-16delTGT
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.460-18_460-16delTGT
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.331-18_331-16delTGT
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.370-18_370-16delTGT
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.241-18_241-16delTGT
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.241-18_241-16delTGT
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.460-18_460-16delTGT
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.460-18_460-16delTGT
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7534
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31338
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: GACA
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

5-137655084-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137655084
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137655084
    reference: chr 5
allele count: 2
allele frequency: 1.765910856819948e-5
allele num: 113256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.370-21T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.331-21T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.241-21T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.460-21T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.460-21T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.241-21T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.460-21T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.370-21T>C
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9047
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17955
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22963
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6866
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS

5-137655085-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137655085
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137655085
    reference: chr 5
allele count: 2
allele frequency: 1.766253951993218e-5
allele num: 113234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.370-22A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.241-22A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.460-22A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.241-22A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.331-22A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.370-22A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.460-22A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.460-22A>T
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8982
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3799
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12062
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23270
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-137655086-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137655086
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137655086
    reference: chr 5
allele count: 1
allele frequency: 8.835951720359799e-6
allele num: 113174
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.460-23A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.370-23A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.241-23A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.460-23A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.370-23A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.460-23A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.241-23A>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.331-23A>T
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6294
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13939
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3782
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

5-137655086-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137655086
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137655086
    reference: chr 5
allele count: 1
allele frequency: 8.835951720359799e-6
allele num: 113174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.241-23A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.460-23A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.241-23A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.370-23A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.370-23A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.331-23A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.460-23A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.460-23A>G
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6294
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12087
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6822
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

5-137655092-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137655092
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137655092
    reference: chr 5
allele count: 1
allele frequency: 8.92793371902007e-6
allele num: 112008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.241-29G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.370-29G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.241-29G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.460-29G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.460-29G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.331-29G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.460-29G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.370-29G>A
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4180
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4715
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13989
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19777
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

5-137655094-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137655094
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137655094
    reference: chr 5
allele count: 2
allele frequency: 1.796041524480046e-5
allele num: 111356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.241-31T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.460-31T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.460-31T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.370-31T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.241-31T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.331-31T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.460-31T>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.370-31T>A
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3902
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4664
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4032
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14470
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16241
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/5-137655114-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137655114
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137655114
    reference: chr 5
allele count: 2
allele frequency: 1.985624081648862e-5
allele num: 100724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.460-51G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.460-51G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.241-51G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.241-51G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.460-51G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.331-51G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.370-51G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.370-51G>T
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17549
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8876
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4096
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7498
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4653
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/5-137661462-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661462
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661462
    reference: chr 5
allele count: 3
allele frequency: 2.6279367192838e-5
allele num: 114158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.330+42T>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+248T>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2711T>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.459+42T>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.459+42T>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+248T>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.459+42T>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2711T>G
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9276
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22860
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4425
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

5-137661469-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661469
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661469
    reference: chr 5
allele count: 1
allele frequency: 8.717179817985285e-6
allele num: 114716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.330+35G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+241G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.459+35G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2704G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+241G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.459+35G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.459+35G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2704G>A
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25668
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/5-137661473-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661473
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661473
    reference: chr 5
allele count: 3
allele frequency: 2.594527277130107e-5
allele num: 115628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+237G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.459+31G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2700G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+237G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.330+31G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.459+31G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2700G>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.459+31G>T
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31639
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4550
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28062
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

5-137661476-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661476
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661476
    reference: chr 5
allele count: 1
allele frequency: 8.589589417625837e-6
allele num: 116420
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+234A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.330+28A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.459+28A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2697A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.459+28A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2697A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+234A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.459+28A>G
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2315
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

5-137661477-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661477
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661477
    reference: chr 5
allele count: 1
allele frequency: 8.568246080027418e-6
allele num: 116710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+233T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2696T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2696T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.330+27T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.459+27T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.459+27T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+233T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.459+27T>C
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30148
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

5-137661478-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661478
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661478
    reference: chr 5
allele count: 1
allele frequency: 8.550955141689327e-6
allele num: 116946
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.459+26A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2695A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2695A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.330+26A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+232A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.459+26A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+232A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.459+26A>G
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5324
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3042
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

5-137661490-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661490
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661490
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 119138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.330+14G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+220G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.459+14G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2683G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.459+14G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.459+14G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+220G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2683G>A
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4272
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2991
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

5-137661499-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661499
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661499
    reference: chr 5
allele count: 42
allele frequency: 3.504321997129794e-4
allele num: 119852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.330+5G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.459+5G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.459+5G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+211G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2674G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2674G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+211G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.459+5G>A
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12569
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6051
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4795
  bin: 9.75e1
  variant carriers: 42
hgvs: c.459+5G>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

5-137661503-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661503
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661503
    reference: chr 5
allele count: 1
allele frequency: 8.333611120370679e-6
allele num: 119996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.459+1G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.459+1G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2670G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2670G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.330+1G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.459+1G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+207G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+207G>A
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4801
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.459+1G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

5-137661514-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661514
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661514
    reference: chr 5
allele count: 7
allele frequency: 5.815499135982985e-5
allele num: 120368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.449A>C
  hgvsp: ENSP00000427251.1:p.Asn150Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.449A>C
  hgvsp: ENSP00000321656.6:p.Asn150Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427105
  ensembl transcript: ENST00000510119
  gene symbol: CDC25C
  hgvsc: ENST00000510119.1:c.500A>C
  hgvsp: ENSP00000427105.1:p.Asn167Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+196A>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.320A>C
  hgvsp: ENSP00000349821.3:p.Asn107Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2659A>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+196A>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.449A>C
  hgvsp: ENSP00000424795.1:p.Asn150Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2659A>C
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn150Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

5-137661515-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661515
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661515
    reference: chr 5
allele count: 1
allele frequency: 8.305785810395521e-6
allele num: 120398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.319A>G
  hgvsp: ENSP00000349821.3:p.Asn107Asp
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.448A>G
  hgvsp: ENSP00000427251.1:p.Asn150Asp
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427105
  ensembl transcript: ENST00000510119
  gene symbol: CDC25C
  hgvsc: ENST00000510119.1:c.499A>G
  hgvsp: ENSP00000427105.1:p.Asn167Asp
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2658A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+195A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+195A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.448A>G
  hgvsp: ENSP00000321656.6:p.Asn150Asp
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.448A>G
  hgvsp: ENSP00000424795.1:p.Asn150Asp
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2658A>G
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4829
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn150Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ

5-137661521-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661521
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661521
    reference: chr 5
allele count: 1
allele frequency: 8.290224167661493e-6
allele num: 120624
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2652T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+189T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.442T>C
  hgvsp: ENSP00000427251.1:p.Ser148Pro
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2652T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.442T>C
  hgvsp: ENSP00000321656.6:p.Ser148Pro
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.442T>C
  hgvsp: ENSP00000424795.1:p.Ser148Pro
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+189T>C
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427105
  ensembl transcript: ENST00000510119
  gene symbol: CDC25C
  hgvsc: ENST00000510119.1:c.493T>C
  hgvsp: ENSP00000427105.1:p.Ser165Pro
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.313T>C
  hgvsp: ENSP00000349821.3:p.Ser105Pro
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4417
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser148Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

5-137661526-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661526
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661526
    reference: chr 5
allele count: 1
allele frequency: 8.283219853221344e-6
allele num: 120726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.437G>A
  hgvsp: ENSP00000427251.1:p.Ser146Asn
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+184G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+184G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2647G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2647G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427105
  ensembl transcript: ENST00000510119
  gene symbol: CDC25C
  hgvsc: ENST00000510119.1:c.488G>A
  hgvsp: ENSP00000427105.1:p.Ser163Asn
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.437G>A
  hgvsp: ENSP00000321656.6:p.Ser146Asn
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.437G>A
  hgvsp: ENSP00000424795.1:p.Ser146Asn
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.308G>A
  hgvsp: ENSP00000349821.3:p.Ser103Asn
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser146Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

5-137661527-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661527
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661527
    reference: chr 5
allele count: 1
allele frequency: 8.281436332317477e-6
allele num: 120752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427105
  ensembl transcript: ENST00000510119
  gene symbol: CDC25C
  hgvsc: ENST00000510119.1:c.487A>G
  hgvsp: ENSP00000427105.1:p.Ser163Gly
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.436A>G
  hgvsp: ENSP00000424795.1:p.Ser146Gly
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2646A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.307A>G
  hgvsp: ENSP00000349821.3:p.Ser103Gly
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.436A>G
  hgvsp: ENSP00000427251.1:p.Ser146Gly
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.436A>G
  hgvsp: ENSP00000321656.6:p.Ser146Gly
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+183A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+183A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2646A>G
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3375
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser146Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS

5-137661531-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661531
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661531
    reference: chr 5
allele count: 1
allele frequency: 8.276775368316504e-6
allele num: 120820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+179G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.432G>A
  hgvsp: ENSP00000427251.1:p.Met144Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.432G>A
  hgvsp: ENSP00000424795.1:p.Met144Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.303G>A
  hgvsp: ENSP00000349821.3:p.Met101Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.432G>A
  hgvsp: ENSP00000321656.6:p.Met144Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2642G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427105
  ensembl transcript: ENST00000510119
  gene symbol: CDC25C
  hgvsc: ENST00000510119.1:c.483G>A
  hgvsp: ENSP00000427105.1:p.Met161Ile
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+179G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2642G>A
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met144Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-137661536-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661536
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661536
    reference: chr 5
allele count: 1
allele frequency: 8.269930532583527e-6
allele num: 120920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427105
  ensembl transcript: ENST00000510119
  gene symbol: CDC25C
  hgvsc: ENST00000510119.1:c.478G>A
  hgvsp: ENSP00000427105.1:p.Ala160Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+174G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+174G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2637G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.427G>A
  hgvsp: ENSP00000321656.6:p.Ala143Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.427G>A
  hgvsp: ENSP00000427251.1:p.Ala143Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.427G>A
  hgvsp: ENSP00000424795.1:p.Ala143Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.298G>A
  hgvsp: ENSP00000349821.3:p.Ala100Thr
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2637G>A
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12717
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3128
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala143Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

5-137661545-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661545
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661545
    reference: chr 5
allele count: 3
allele frequency: 2.47843759294141e-5
allele num: 121044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2628A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+165A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.418A>G
  hgvsp: ENSP00000427251.1:p.Lys140Glu
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2628A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427105
  ensembl transcript: ENST00000510119
  gene symbol: CDC25C
  hgvsc: ENST00000510119.1:c.469A>G
  hgvsp: ENSP00000427105.1:p.Lys157Glu
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+165A>G
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.289A>G
  hgvsp: ENSP00000349821.3:p.Lys97Glu
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.418A>G
  hgvsp: ENSP00000424795.1:p.Lys140Glu
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.418A>G
  hgvsp: ENSP00000321656.6:p.Lys140Glu
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33250
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys140Glu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

5-137661556-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661556
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661556
    reference: chr 5
allele count: 11
allele frequency: 9.081002542680712e-5
allele num: 121132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2617G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+154G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.407G>A
  hgvsp: ENSP00000424795.1:p.Arg136His
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.407G>A
  hgvsp: ENSP00000427251.1:p.Arg136His
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.407G>A
  hgvsp: ENSP00000321656.6:p.Arg136His
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+154G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427105
  ensembl transcript: ENST00000510119
  gene symbol: CDC25C
  hgvsc: ENST00000510119.1:c.458G>A
  hgvsp: ENSP00000427105.1:p.Arg153His
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.278G>A
  hgvsp: ENSP00000349821.3:p.Arg93His
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2617G>A
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8391
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33253
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg136His
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

5-137661557-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661557
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661557
    reference: chr 5
allele count: 3
allele frequency: 2.476432616268511e-5
allele num: 121142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.277C>T
  hgvsp: ENSP00000349821.3:p.Arg93Cys
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.406C>T
  hgvsp: ENSP00000321656.6:p.Arg136Cys
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+153C>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427105
  ensembl transcript: ENST00000510119
  gene symbol: CDC25C
  hgvsc: ENST00000510119.1:c.457C>T
  hgvsp: ENSP00000427105.1:p.Arg153Cys
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.406C>T
  hgvsp: ENSP00000424795.1:p.Arg136Cys
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+153C>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.406C>T
  hgvsp: ENSP00000427251.1:p.Arg136Cys
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2616C>T
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2616C>T
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3378
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4437
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33270
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg136Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

5-137661566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 137661566
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 137661566
    reference: chr 5
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000321656
  ensembl transcript: ENST00000323760
  gene symbol: CDC25C
  hgvsc: ENST00000323760.6:c.397G>A
  hgvsp: ENSP00000321656.6:p.Gly133Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000424795
  ensembl transcript: ENST00000513970
  gene symbol: CDC25C
  hgvsc: ENST00000513970.1:c.397G>A
  hgvsp: ENSP00000424795.1:p.Gly133Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000349821
  ensembl transcript: ENST00000357274
  gene symbol: CDC25C
  hgvsc: ENST00000357274.3:c.268G>A
  hgvsp: ENSP00000349821.3:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427251
  ensembl transcript: ENST00000503022
  gene symbol: CDC25C
  hgvsc: ENST00000503022.1:c.397G>A
  hgvsp: ENSP00000427251.1:p.Gly133Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000348898
  ensembl transcript: ENST00000356505
  gene symbol: CDC25C
  hgvsc: ENST00000356505.3:c.369+144G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000425470
  ensembl transcript: ENST00000514555
  gene symbol: CDC25C
  hgvsc: ENST00000514555.1:c.369+144G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000427105
  ensembl transcript: ENST00000510119
  gene symbol: CDC25C
  hgvsc: ENST00000510119.1:c.448G>A
  hgvsp: ENSP00000427105.1:p.Gly150Ser
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000392631
  ensembl transcript: ENST00000415130
  gene symbol: CDC25C
  hgvsc: ENST00000415130.2:c.240+2607G>A
  variant of: http://identifiers.org/hgnc/1727
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158402
  ensembl protein: ENSP00000345205
  ensembl transcript: ENST00000348983
  gene symbol: CDC25C
  hgvsc: ENST00000348983.3:c.240+2607G>A
  variant of: http://identifiers.org/hgnc/1727
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33280
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly133Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-33936835-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33936835
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33936835
    reference: chr 5
allele count: 1
allele frequency: 9.137927883473143e-6
allele num: 109434
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182631
  ensembl protein: ENSP00000328708
  ensembl transcript: ENST00000330120
  gene symbol: RXFP3
  hgvsc: ENST00000330120.3:c.-11G>A
  variant of: http://identifiers.org/hgnc/24883
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41111
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8067
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 780
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11454
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9980
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

5-33936836-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33936836
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33936836
    reference: chr 5
allele count: 2
allele frequency: 1.82711808664194e-5
allele num: 109462
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182631
  ensembl protein: ENSP00000328708
  ensembl transcript: ENST00000330120
  gene symbol: RXFP3
  hgvsc: ENST00000330120.3:c.-10G>A
  variant of: http://identifiers.org/hgnc/24883
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3170
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1912
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8059
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 780
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9988
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 3.166160081053698e-5
  allele num: 63168
  num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/5-33936839-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33936839
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33936839
    reference: chr 5
allele count: 1
allele frequency: 9.131085868731509e-6
allele num: 109516
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182631
  ensembl protein: ENSP00000328708
  ensembl transcript: ENST00000330120
  gene symbol: RXFP3
  hgvsc: ENST00000330120.3:c.-7C>A
  variant of: http://identifiers.org/hgnc/24883
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41141
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3248
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8078
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9996
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9004
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.582278481012658e-5
  allele num: 63200
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

5-33936840-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33936840
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33936840
    reference: chr 5
allele count: 1
allele frequency: 9.129085265656381e-6
allele num: 109540
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182631
  ensembl protein: ENSP00000328708
  ensembl transcript: ENST00000330120
  gene symbol: RXFP3
  hgvsc: ENST00000330120.3:c.-6C>T
  variant of: http://identifiers.org/hgnc/24883
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41206
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8077
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3310
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9006
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11458
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8488
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

5-33936848-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33936848
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 33936848
    reference: chr 5
allele count: 1
allele frequency: 9.114607069289243e-6
allele num: 109714
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000182631
  ensembl protein: ENSP00000328708
  ensembl transcript: ENST00000330120
  gene symbol: RXFP3
  hgvsc: ENST00000330120.3:c.3G>A
  hgvsp: ENSP00000328708.3:p.Met1?
  variant of: http://identifiers.org/hgnc/24883
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41289
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3475
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 1446
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3216
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7489
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2466
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37398
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.738994935722633e-5
allele num: 10268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.21e-1

DP
type: SiteQuality
SIO_000300: 2.673157e6

FS
type: SiteQuality
SIO_000300: 2.979e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 9.16e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.478e0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37400
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2751
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1446
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

QD
type: SiteQuality
SIO_000300: 1.046e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.668e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-2

DP
type: SiteQuality
SIO_000300: 2.67152e6

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2471
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.463803255975061e-4
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.668e0

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

DP
type: SiteQuality
SIO_000300: 2.67152e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

FS
type: SiteQuality
SIO_000300: 6.7e-1

QD
type: SiteQuality
SIO_000300: 1.046e1

GenotypeQuality
all individuals: 600
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7017
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37401
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.948558067030398e-4
allele num: 10264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66376
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.04e0

DP
type: SiteQuality
SIO_000300: 2.669693e6

FS
type: SiteQuality
SIO_000300: 8.29e-1

QD
type: SiteQuality
SIO_000300: 1.183e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.012e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7073
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2572
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3214
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.742790335151988e-5
allele num: 10264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e-1

MQ
type: SiteQuality
SIO_000300: 5.602e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

DP
type: SiteQuality
SIO_000300: 2.669488e6

FS
type: SiteQuality
SIO_000300: 1.462e0

VQSLOD
type: SiteQuality
SIO_000300: -1.163e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

QD
type: SiteQuality
SIO_000300: 1.398e1

GenotypeQuality
all individuals: 704
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5918
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2562
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2338
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37400
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 261
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.733402669440111e-4
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.384e0

VQSLOD
type: SiteQuality
SIO_000300: 3.74e-1

DP
type: SiteQuality
SIO_000300: 2.660431e6

QD
type: SiteQuality
SIO_000300: 1.317e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-2

GenotypeQuality
all individuals: 697
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5272
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2743
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2561
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507522537461935e-5
allele num: 66334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

QD
type: SiteQuality
SIO_000300: 1.507e1

FS
type: SiteQuality
SIO_000300: 1.4556e1

VQSLOD
type: SiteQuality
SIO_000300: -1.853e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

DP
type: SiteQuality
SIO_000300: 2.657159e6

GenotypeQuality
all individuals: 2561
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5272
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2743
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37399
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66334
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.657159e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.25e0

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 1.4556e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

VQSLOD
type: SiteQuality
SIO_000300: -1.853e0

QD
type: SiteQuality
SIO_000300: 1.507e1

GenotypeQuality
all individuals: 426
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37399
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2289
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3213
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66298
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.882e0

QD
type: SiteQuality
SIO_000300: 1.551e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.656123e6

VQSLOD
type: SiteQuality
SIO_000300: -1.661e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.125e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 1411
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3848
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37401
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 163
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2743
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.75800156128025e-5
allele num: 10248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.487e0

VQSLOD
type: SiteQuality
SIO_000300: 4.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.723e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 2.656608e6

QD
type: SiteQuality
SIO_000300: 1.025e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

GenotypeQuality
all individuals: 2072
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34358
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3616
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 490
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 5.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65726
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.082152974504249e-5
allele num: 14120
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

MQRankSum
type: SiteQuality
SIO_000300: -6.68e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.069e0

FS
type: SiteQuality
SIO_000300: 2.071e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.791476e6

GenotypeQuality
all individuals: 471
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2276
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3610
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 343
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520542529574552e-5
allele num: 65766
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.01e-1

DP
type: SiteQuality
SIO_000300: 1.791746e6

FS
type: SiteQuality
SIO_000300: 7.363e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.218e1

GenotypeQuality
all individuals: 2059
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3600
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1037
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 6
allele frequency: 5.837711617046118e-4
allele num: 10278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.795611e6

VQSLOD
type: SiteQuality
SIO_000300: 8.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.24e-1

QD
type: SiteQuality
SIO_000300: 1.559e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 427
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3593
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10765
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36876
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.800870511425463e-5
allele num: 14704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515702679762338e-5
allele num: 65976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 1.404e1

FS
type: SiteQuality
SIO_000300: 1.021e0

MQRankSum
type: SiteQuality
SIO_000300: -5.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.75e-1

DP
type: SiteQuality
SIO_000300: 1.815099e6

GenotypeQuality
all individuals: 484
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10800
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3592
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2062
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66042
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.49e-1

QD
type: SiteQuality
SIO_000300: 1.237e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e0

DP
type: SiteQuality
SIO_000300: 1.821348e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.73e-1

FS
type: SiteQuality
SIO_000300: 2.098e0

MQRankSum
type: SiteQuality
SIO_000300: -5.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 101
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10811
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37385
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.682705159048383e-5
allele num: 14964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.829e0

VQSLOD
type: SiteQuality
SIO_000300: -2.528e0

DP
type: SiteQuality
SIO_000300: 1.825028e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.06e-1

QD
type: SiteQuality
SIO_000300: 2.036e1

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10880
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37855
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2304
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3592
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 323
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510345869204048e-5
allele num: 66210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.974e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-1

FS
type: SiteQuality
SIO_000300: 9.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 1.830245e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e-1

QD
type: SiteQuality
SIO_000300: 1.394e1

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10895
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37972
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509980974239725e-5
allele num: 66226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.015e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.403e0

DP
type: SiteQuality
SIO_000300: 1.831521e6

FS
type: SiteQuality
SIO_000300: 6.287e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.546e-1

QD
type: SiteQuality
SIO_000300: 1.333e1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3591
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 321
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10963
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38980
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009872381411028e-5
allele num: 66448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.019e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.225e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

DP
type: SiteQuality
SIO_000300: 1.844751e6

FS
type: SiteQuality
SIO_000300: 1.1946e1

QD
type: SiteQuality
SIO_000300: 1.309e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.03e-1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2072
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39157
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3589
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008604609182261e-5
allele num: 66476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.378e0

QD
type: SiteQuality
SIO_000300: 1.097e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 3.977e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.847037e6

MQ
type: SiteQuality
SIO_000300: 5.984e1

MQRankSum
type: SiteQuality
SIO_000300: 4.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.78e-1

GenotypeQuality
all individuals: 11052
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2326
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2079
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39783
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.856027e6

QD
type: SiteQuality
SIO_000300: 1.803e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 322
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39797
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2080
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3588
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 57
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21300339640951e-4
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.35e-2

FS
type: SiteQuality
SIO_000300: 1.078e1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.489e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.773e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

DP
type: SiteQuality
SIO_000300: 1.856165e6

GenotypeQuality
all individuals: 480
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2324
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39810
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11047
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3586
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 7.34e-1

QD
type: SiteQuality
SIO_000300: 1.53e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: -7.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.88e-1

DP
type: SiteQuality
SIO_000300: 1.856343e6

GenotypeQuality
all individuals: 3585
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11049
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39861
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2326
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

DP
type: SiteQuality
SIO_000300: 1.85688e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.55e-1

FS
type: SiteQuality
SIO_000300: 6.934e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.149e1

GenotypeQuality
all individuals: 321
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39857
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3586
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2077
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11050
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.856879e6

FS
type: SiteQuality
SIO_000300: 5.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

QD
type: SiteQuality
SIO_000300: 1.393e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.95e-1

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3585
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39847
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.648977633867002e-4
allele num: 66708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

FS
type: SiteQuality
SIO_000300: 4.284e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

QD
type: SiteQuality
SIO_000300: 1.332e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

DP
type: SiteQuality
SIO_000300: 1.857182e6

GenotypeQuality
all individuals: 952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2324
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11049
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39854
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.856365e6

QD
type: SiteQuality
SIO_000300: 6.93e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.611e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.24e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11043
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39848
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2070
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2320
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 20
allele frequency: 1.727712508638563e-3
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.886836027713626e-4
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.071666162685213e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 155
allele frequency: 2.323629058855275e-3
allele num: 66706
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.207505518763797e-3
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028834504482675e-4
allele num: 16508
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.674e0

QD
type: SiteQuality
SIO_000300: 1.306e1

VQSLOD
type: SiteQuality
SIO_000300: 6.44e0

DP
type: SiteQuality
SIO_000300: 1.862966e6

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39981
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3433
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 321
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.613e0

FS
type: SiteQuality
SIO_000300: 8.939e0

DP
type: SiteQuality
SIO_000300: 1.851888e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.14e0

VQSLOD
type: SiteQuality
SIO_000300: -4.094e0

QD
type: SiteQuality
SIO_000300: 1.398e1

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39977
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11069
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3431
bin: 9.75e1
variant carriers: 4

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.622140050843541e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.106e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

MQ
type: SiteQuality
SIO_000300: 5.991e1

DP
type: SiteQuality
SIO_000300: 1.85181e6

QD
type: SiteQuality
SIO_000300: 1.506e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.76e-1

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11064
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39978
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3427
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 474
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2321
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998770504093322e-5
allele num: 66694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.85e-1

DP
type: SiteQuality
SIO_000300: 1.851437e6

VQSLOD
type: SiteQuality
SIO_000300: 5.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.86e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 1.269e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.459e0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39984
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11064
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3424
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 943
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.261e1

DP
type: SiteQuality
SIO_000300: 1.851299e6

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.27e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11059
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39975
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3422
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 9.23e0

DP
type: SiteQuality
SIO_000300: 1.851015e6

FS
type: SiteQuality
SIO_000300: 1.862e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.013e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3421
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2074
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.57e-1

DP
type: SiteQuality
SIO_000300: 1.850903e6

FS
type: SiteQuality
SIO_000300: 1.071e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10873
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2239
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3392
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158748551564311e-4
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

DP
type: SiteQuality
SIO_000300: 1.8308e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e0

VQSLOD
type: SiteQuality
SIO_000300: -8.297e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 3.955e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 6.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

GenotypeQuality
all individuals: 195
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1921
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1564
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3386
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38477
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.17283950617284e-5
allele num: 16200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65938
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

DP
type: SiteQuality
SIO_000300: 1.820037e6

FS
type: SiteQuality
SIO_000300: 6.154e0

GenotypeQuality
all individuals: 2155
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3376
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37835
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522209029743965e-5
allele num: 65694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

FS
type: SiteQuality
SIO_000300: 2.251e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.704e0

DP
type: SiteQuality
SIO_000300: 1.806592e6

VQSLOD
type: SiteQuality
SIO_000300: -4.167e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 2.6e0

GenotypeQuality
all individuals: 1343
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3371
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.569710859259724e-5
allele num: 63706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.09e-1

MQ
type: SiteQuality
SIO_000300: 5.9e1

FS
type: SiteQuality
SIO_000300: 5.427e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.685e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 9.23e0

MQRankSum
type: SiteQuality
SIO_000300: 2.36e-1

DP
type: SiteQuality
SIO_000300: 1.690291e6

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7308
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.392344497607656e-4
allele num: 8360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63466
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

QD
type: SiteQuality
SIO_000300: 1.613e1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.096e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-1

FS
type: SiteQuality
SIO_000300: 1.688e0

DP
type: SiteQuality
SIO_000300: 1.670776e6

MQ
type: SiteQuality
SIO_000300: 5.584e1

GenotypeQuality
all individuals: 431
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3806
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12032
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1656
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 263
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1594
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.226014581585909e-5
allele num: 61996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15096
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.500766e6

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.070000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.037e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 1.966e0

GenotypeQuality
all individuals: 274
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3160
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6852
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.613163413453783e-5
allele num: 61990
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10912
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022285831118381e-4
allele num: 9782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.79e-1

QD
type: SiteQuality
SIO_000300: 8.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.73e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 1.499588e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.282e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.113e0

GenotypeQuality
all individuals: 352
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1647
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12087
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6822
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23601
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.614257118873894e-5
allele num: 61948
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.878e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.113e0

QD
type: SiteQuality
SIO_000300: 5.92e0

DP
type: SiteQuality
SIO_000300: 1.498464e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

GenotypeQuality
all individuals: 352
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3160
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23601
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3782
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1647
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.614257118873894e-5
allele num: 61948
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.878e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

QD
type: SiteQuality
SIO_000300: 5.92e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.113e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.498464e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

GenotypeQuality
all individuals: 153
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5703
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2907
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632120124041129e-5
allele num: 61270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10810
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.136e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.03e-1

DP
type: SiteQuality
SIO_000300: 1.389308e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

QD
type: SiteQuality
SIO_000300: 1.105e1

VQSLOD
type: SiteQuality
SIO_000300: 4.93e-1

GenotypeQuality
all individuals: 6893
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3364
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 612
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.857355126300148e-4
allele num: 10768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.05e0

QD
type: SiteQuality
SIO_000300: 1.552e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

FS
type: SiteQuality
SIO_000300: 4.337e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.29e-1

DP
type: SiteQuality
SIO_000300: 1.335755e6

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10016
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2914
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2963
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3358
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 754
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.844141069397042e-4
allele num: 7032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13166
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

QD
type: SiteQuality
SIO_000300: 1.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.262e0

DP
type: SiteQuality
SIO_000300: 1.165183e6

GenotypeQuality
all individuals: 3772
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18998
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3227
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6106
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3261
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3185
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4455
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15918
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.725785934944576e-4
allele num: 11006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.34e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.67e-1

QD
type: SiteQuality
SIO_000300: 1.693e1

DP
type: SiteQuality
SIO_000300: 1.368165e6

GenotypeQuality
all individuals: 2711
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2764
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4486
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3504
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2348
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3047
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.077121930202499e-4
allele num: 9284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15946
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

DP
type: SiteQuality
SIO_000300: 1.43289e6

MQ
type: SiteQuality
SIO_000300: 5.747e1

VQSLOD
type: SiteQuality
SIO_000300: -1.392e0

QD
type: SiteQuality
SIO_000300: 1.368e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
all individuals: 399
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2893
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1399
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3768
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.57331655129012e-5
allele num: 63560
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.134927412467976e-4
allele num: 9368
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.354e1

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

FS
type: SiteQuality
SIO_000300: 3.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.764e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
SIO_000300: 1.475097e6

GenotypeQuality
all individuals: 1420
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7539
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3954
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4579
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1126
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29393
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.561816705191479e-5
allele num: 64028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11236
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.492e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

DP
type: SiteQuality
SIO_000300: 1.497734e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

GenotypeQuality
all individuals: 272
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2741
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3021
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3970
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4585
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7617
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.884150675195451e-5
allele num: 11256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16106
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e0

DP
type: SiteQuality
SIO_000300: 1.505306e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.48e0

VQSLOD
type: SiteQuality
SIO_000300: -1.681e0

MQ
type: SiteQuality
SIO_000300: 5.832e1

QD
type: SiteQuality
SIO_000300: 1.235e1

GenotypeQuality
all individuals: 3995
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2080
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30442
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2764
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7673
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4592
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1137
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64312
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.203473945409429e-5
allele num: 16120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.513e1

DP
type: SiteQuality
SIO_000300: 1.510819e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.517e0

VQSLOD
type: SiteQuality
SIO_000300: -6.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 8167
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3236
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4704
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32555
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.781e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 1.558397e6

VQSLOD
type: SiteQuality
SIO_000300: -9.424e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32803
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3078
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4364
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3314
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

South Asian
type: Population
allele count: 42
allele frequency: 2.565982404692082e-3
allele num: 16368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-2

QD
type: SiteQuality
SIO_000300: 1.213e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.764e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 1.748e0

DP
type: SiteQuality
SIO_000300: 1.570437e6

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32850
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3094
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3337
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4387
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.103515625e-5
allele num: 16384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.731e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

QD
type: SiteQuality
SIO_000300: 1.231e1

DP
type: SiteQuality
SIO_000300: 1.573184e6

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4828
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3363
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8321
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4410
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33018
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.264652126233703e-4
allele num: 16414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66170
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.507e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

VQSLOD
type: SiteQuality
SIO_000300: 5.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.03e-1

QD
type: SiteQuality
SIO_000300: 1.489e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.577694e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.79e-1

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3113
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4411
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8320
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510802235987309e-5
allele num: 66190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.277e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.237e0

VQSLOD
type: SiteQuality
SIO_000300: -9.525e-1

QD
type: SiteQuality
SIO_000300: 1.576e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.578048e6

MQ
type: SiteQuality
SIO_000300: 5.664e1

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33105
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3116
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8349
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3370
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4839
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508068164681044e-5
allele num: 66310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.580352e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.38e-1

QD
type: SiteQuality
SIO_000300: 1.14e1

FS
type: SiteQuality
SIO_000300: 3.679e0

VQSLOD
type: SiteQuality
SIO_000300: 5.82e-1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8359
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4840
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3374
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3120
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4425
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506614035616356e-5
allele num: 66374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

FS
type: SiteQuality
SIO_000300: 4.076e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.268e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

DP
type: SiteQuality
SIO_000300: 1.58149e6

VQSLOD
type: SiteQuality
SIO_000300: 6.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.69e0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8361
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4426
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33137
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4842
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506341698550899e-5
allele num: 66386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.924e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.06e0

MQRankSum
type: SiteQuality
SIO_000300: -6.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.581731e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 4842
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4427
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3378
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8361
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33168
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3125
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505570611261668e-5
allele num: 66420
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.389e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.48e-1

DP
type: SiteQuality
SIO_000300: 1.582515e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 4844
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33203
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4427
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3377
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504483360414034e-5
allele num: 66468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.583412e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.959e0

MQRankSum
type: SiteQuality
SIO_000300: -4.72e-1

FS
type: SiteQuality
SIO_000300: 6.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: -2.873e-1

QD
type: SiteQuality
SIO_000300: 1.014e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.35e-1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4852
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8379
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3130
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3377
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4429
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.509108398965911e-5
allele num: 66532
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.37e-1

FS
type: SiteQuality
SIO_000300: 3.036e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

QD
type: SiteQuality
SIO_000300: 1.617e1

DP
type: SiteQuality
SIO_000300: 1.584808e6

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3133
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4864
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 3378
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.598302442404296e-4
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.010632546404758e-5
allele num: 66588
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.095e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.586385e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8392
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3133
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4867
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.656237929702588e-5
allele num: 10356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.17e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 1.58647e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

FS
type: SiteQuality
SIO_000300: 4.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

VQSLOD
type: SiteQuality
SIO_000300: 3.57e-1

GenotypeQuality
all individuals: 3382
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3134
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8398
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4438
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4870
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.336e0

QD
type: SiteQuality
SIO_000300: 9.02e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.587061e6

FS
type: SiteQuality
SIO_000300: 2.891e0

MQRankSum
type: SiteQuality
SIO_000300: -4.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.202e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.111111111111111e-4
allele num: 9000
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.006e0

DP
type: SiteQuality
SIO_000300: 1.420686e6

MQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: 4.96e-1

QD
type: SiteQuality
SIO_000300: 1.073e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.955e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.154e0

FS
type: SiteQuality
SIO_000300: 2.023e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.076e1

DP
type: SiteQuality
SIO_000300: 1.421264e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.5e0

FS
type: SiteQuality
SIO_000300: 9.768000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.622e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

DP
type: SiteQuality
SIO_000300: 1.42276e6

QD
type: SiteQuality
SIO_000300: 1.323e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63220
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.000200040008002e-4
allele num: 9998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.228e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

DP
type: SiteQuality
SIO_000300: 1.42339e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.12e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.98e-1

QD
type: SiteQuality
SIO_000300: 1.628e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.76e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1