6-54002741-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54002741
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54002741
    reference: chr 6
allele count: 7
allele frequency: 5.695687550854353e-4
allele num: 12290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.1907A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-11113A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13078A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13078A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.1874A>G
  hgvsp: ENSP00000426290.1:p.Lys625Arg
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13078A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13078A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.1841A>G
  hgvsp: ENSP00000425142.1:p.Lys614Arg
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-11113A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13078A>G
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5109
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys625Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

6-54002762-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54002762
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54002762
    reference: chr 6
allele count: 1
allele frequency: 8.124796880077999e-5
allele num: 12308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13099C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13099C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13099C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.1928C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.1862C>G
  hgvsp: ENSP00000425142.1:p.Ser621Cys
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-11092C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-11092C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.1895C>G
  hgvsp: ENSP00000426290.1:p.Ser632Cys
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13099C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13099C>G
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser632Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

6-54002779-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54002779
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54002779
    reference: chr 6
allele count: 1
allele frequency: 8.119519324455992e-5
allele num: 12316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13116C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-11075C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13116C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.1912C>T
  hgvsp: ENSP00000426290.1:p.Pro638Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.1945C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13116C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13116C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-11075C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13116C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.1879C>T
  hgvsp: ENSP00000425142.1:p.Pro627Ser
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro638Ser
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

6-54002785-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54002785
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54002785
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 12322
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-11069G>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13122G>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.1885G>T
  hgvsp: ENSP00000425142.1:p.Ala629Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-11069G>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.1951G>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13122G>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13122G>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13122G>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.1918G>T
  hgvsp: ENSP00000426290.1:p.Ala640Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13122G>T
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala640Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD

6-54002806-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54002806
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54002806
    reference: chr 6
allele count: 1
allele frequency: 8.114248620577734e-5
allele num: 12324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13143T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.1906T>C
  hgvsp: ENSP00000425142.1:p.Ser636Pro
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13143T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.1972T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13143T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13143T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.1939T>C
  hgvsp: ENSP00000426290.1:p.Ser647Pro
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-11048T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-11048T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13143T>C
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3663
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser647Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

6-54002841-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54002841
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54002841
    reference: chr 6
allele count: 4
allele frequency: 3.245699448231094e-4
allele num: 12324
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-11013G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13178G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13178G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.1974G>A
  hgvsp: ENST00000502396.1:c.1974G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.1941G>A
  hgvsp: ENST00000514921.1:c.1941G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13178G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13178G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-11013G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13178G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2007G>A
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg658Arg
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

6-54002908-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54002908
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54002908
    reference: chr 6
allele count: 5
allele frequency: 4.061078622482131e-4
allele num: 12312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2074C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-10946C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13245C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2041C>T
  hgvsp: ENSP00000426290.1:p.Pro681Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2008C>T
  hgvsp: ENSP00000425142.1:p.Pro670Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13245C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-10946C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13245C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13245C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13245C>T
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5205
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro681Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

6-54002916-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54002916
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54002916
    reference: chr 6
allele count: 1
allele frequency: 8.130081300813008e-5
allele num: 12300
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-10938C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13253C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13253C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2049C>T
  hgvsp: ENST00000502396.1:c.2049C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13253C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-10938C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13253C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2016C>T
  hgvsp: ENST00000514921.1:c.2016C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2082C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13253C>T
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Cys683Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

6-54002927-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54002927
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54002927
    reference: chr 6
allele count: 20
allele frequency: 1.627074520013017e-3
allele num: 12292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2060C>T
  hgvsp: ENSP00000426290.1:p.Thr687Ile
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-10927C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2027C>T
  hgvsp: ENSP00000425142.1:p.Thr676Ile
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13264C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13264C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-10927C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13264C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13264C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13264C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2093C>T
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr687Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

6-54002935-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54002935
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54002935
    reference: chr 6
allele count: 4
allele frequency: 3.2599837000815e-4
allele num: 12270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2068T>A
  hgvsp: ENSP00000426290.1:p.Ser690Thr
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13272T>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-10919T>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2035T>A
  hgvsp: ENSP00000425142.1:p.Ser679Thr
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-10919T>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13272T>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13272T>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13272T>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2101T>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13272T>A
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser690Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/6-54002963-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54002963
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54002963
    reference: chr 6
allele count: 2
allele frequency: 1.64257555847569e-4
allele num: 12176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13300C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-10891C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2129C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-10891C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2063C>A
  hgvsp: ENSP00000425142.1:p.Thr688Asn
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2096C>A
  hgvsp: ENSP00000426290.1:p.Thr699Asn
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13300C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13300C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13300C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13300C>A
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr699Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

6-54002966-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54002966
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54002966
    reference: chr 6
allele count: 19
allele frequency: 1.561216105176664e-3
allele num: 12170
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-10888C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-10888C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13303C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2099C>G
  hgvsp: ENSP00000426290.1:p.Pro700Arg
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2132C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13303C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2066C>G
  hgvsp: ENSP00000425142.1:p.Pro689Arg
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13303C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13303C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13303C>G
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro700Arg
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

6-54002971-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54002971
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54002971
    reference: chr 6
allele count: 1
allele frequency: 8.225037012666557e-5
allele num: 12158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13308C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13308C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2104C>T
  hgvsp: ENSP00000426290.1:p.His702Tyr
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2071C>T
  hgvsp: ENSP00000425142.1:p.His691Tyr
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13308C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-10883C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13308C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-10883C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2137C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13308C>T
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His702Tyr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum

6-54002975-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54002975
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54002975
    reference: chr 6
allele count: 1
allele frequency: 8.235875473562839e-5
allele num: 12142
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13312G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2141G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-10879G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13312G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13312G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2108G>C
  hgvsp: ENSP00000426290.1:p.Arg703Thr
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2075G>C
  hgvsp: ENSP00000425142.1:p.Arg692Thr
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-10879G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13312G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13312G>C
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg703Thr
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

6-54002983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54002983
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54002983
    reference: chr 6
allele count: 1
allele frequency: 8.250825082508251e-5
allele num: 12120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2149G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13320G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2083G>A
  hgvsp: ENSP00000425142.1:p.Val695Ile
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-10871G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13320G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2116G>A
  hgvsp: ENSP00000426290.1:p.Val706Ile
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13320G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13320G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-10871G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13320G>A
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val706Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/6-54002992-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54002992
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54002992
    reference: chr 6
allele count: 1
allele frequency: 8.271298593879239e-5
allele num: 12090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2125C>A
  hgvsp: ENSP00000426290.1:p.Pro709Thr
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13329C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13329C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13329C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13329C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2092C>A
  hgvsp: ENSP00000425142.1:p.Pro698Thr
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-10862C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2158C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-10862C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13329C>A
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro709Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

6-54003032-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54003032
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54003032
    reference: chr 6
allele count: 3
allele frequency: 2.51846877098724e-4
allele num: 11912
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13369T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13369T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2132T>C
  hgvsp: ENSP00000425142.1:p.Ile711Thr
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13369T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2165T>C
  hgvsp: ENSP00000426290.1:p.Ile722Thr
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2198T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-10822T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13369T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13369T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-10822T>C
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile722Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

6-54003052-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54003052
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54003052
    reference: chr 6
allele count: 6
allele frequency: 5.162622612287042e-4
allele num: 11622
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-10802A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-10802A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2152A>G
  hgvsp: ENSP00000425142.1:p.Met718Val
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13389A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13389A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13389A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2218A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2185A>G
  hgvsp: ENSP00000426290.1:p.Met729Val
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13389A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13389A>G
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met729Val
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

6-54003058-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54003058
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54003058
    reference: chr 6
allele count: 1
allele frequency: 8.788890841975742e-5
allele num: 11378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2158A>G
  hgvsp: ENSP00000425142.1:p.Thr720Ala
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13395A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13395A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13395A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2191A>G
  hgvsp: ENSP00000426290.1:p.Thr731Ala
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2224A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13395A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-10796A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-10796A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13395A>G
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr731Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

6-54003062-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54003062
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54003062
    reference: chr 6
allele count: 10
allele frequency: 8.9126559714795e-4
allele num: 11220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13399G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2228G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13399G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13399G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-10792G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2162G>C
  hgvsp: ENSP00000425142.1:p.Gly721Ala
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2195G>C
  hgvsp: ENSP00000426290.1:p.Gly732Ala
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13399G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13399G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-10792G>C
  variant of: http://identifiers.org/hgnc/21355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly732Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

http://identifiers.org/exac.variant/6-54003110-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54003110
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54003110
    reference: chr 6
allele count: 1
allele frequency: 1.372872048325096e-4
allele num: 7284
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-10744A>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.426+13447A>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2184+26A>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2217+26A>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.594+13447A>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.456+13447A>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2250+26A>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-10744A>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.615+13447A>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.456+13447A>C
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/6-54013807-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013807
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013807
    reference: chr 6
allele count: 3
allele frequency: 2.503128911138924e-5
allele num: 119850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20519C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2185-47C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20519C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20519C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2251-47C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2218-47C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-47C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11358C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-47C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11358C>A
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18740
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-54013808-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013808
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013808
    reference: chr 6
allele count: 1
allele frequency: 8.331666999933347e-6
allele num: 120024
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-46T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11357T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2251-46T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20518T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-46T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20518T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2185-46T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2218-46T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20518T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11357T>C
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

6-54013821-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013821
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013821
    reference: chr 6
allele count: 1
allele frequency: 8.316561600771776e-6
allele num: 120242
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-33T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11344T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2218-33T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2251-33T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2185-33T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11344T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20505T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-33T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20505T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20505T>C
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14336
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3692
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

6-54013829-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013829
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013829
    reference: chr 6
allele count: 74
allele frequency: 6.145056551128532e-4
allele num: 120422
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2185-25C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11336C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11336C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2251-25C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2218-25C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-25C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20497C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-25C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20497C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20497C>G
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 20260
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14799
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13071
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum

6-54013833-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013833
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013833
    reference: chr 6
allele count: 1
allele frequency: 8.298892927683448e-6
allele num: 120498
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-21C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2218-21C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20493C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20493C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2185-21C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11332C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11332C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2251-21C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-21C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20493C>T
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33271
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5359
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2270
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

6-54013837-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013837
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013837
    reference: chr 6
allele count: 3
allele frequency: 2.48809859505366e-5
allele num: 120574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-17C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11328C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-17C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11328C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20489C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2185-17C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20489C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2218-17C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2251-17C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20489C>T
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3692
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD

6-54013840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013840
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013840
    reference: chr 6
allele count: 1
allele frequency: 8.289811821271656e-6
allele num: 120630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20486G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20486G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11325G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11325G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-14G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2185-14G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2218-14G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-14G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2251-14G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20486G>A
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9879
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

6-54013844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013844
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013844
    reference: chr 6
allele count: 2
allele frequency: 1.657522666622466e-5
allele num: 120662
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11321C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20482C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11321C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20482C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2251-10C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2218-10C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20482C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-10C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2185-10C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-10C>T
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33621
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9892
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

6-54013845-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013845
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013845
    reference: chr 6
allele count: 3
allele frequency: 2.485748375977728e-5
allele num: 120688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11320C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20481C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-9C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2218-9C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11320C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2185-9C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2251-9C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-9C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20481C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20481C>T
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15007
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20624
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

6-54013847-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013847
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013847
    reference: chr 6
allele count: 9
allele frequency: 7.455144878315468e-5
allele num: 120722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2185-7A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11318A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2251-7A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-7A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2218-7A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-7A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11318A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20479A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20479A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20479A>G
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13157
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
hgvs: c.613-7A>G
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

6-54013848-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013848
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013848
    reference: chr 6
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11317T>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.613-6T>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20478T>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20478T>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.259-6T>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2185-6T>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2218-6T>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2251-6T>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11317T>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20478T>G
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
hgvs: c.613-6T>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-54013855-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013855
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013855
    reference: chr 6
allele count: 1
allele frequency: 8.276364358664525e-6
allele num: 120826
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2186A>C
  hgvsp: ENSP00000425142.1:p.Gln729Pro
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11310A>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.614A>C
  hgvsp: ENSP00000274897.5:p.Gln205Pro
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20471A>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20471A>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20471A>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11310A>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2252A>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.260A>C
  hgvsp: ENSP00000411917.2:p.Gln87Pro
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2219A>C
  hgvsp: ENSP00000426290.1:p.Gln740Pro
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln205Pro
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

6-54013864-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013864
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013864
    reference: chr 6
allele count: 2
allele frequency: 1.65456079683648e-5
allele num: 120878
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11301C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2195C>G
  hgvsp: ENSP00000425142.1:p.Thr732Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.269C>G
  hgvsp: ENSP00000411917.2:p.Thr90Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.623C>G
  hgvsp: ENSP00000274897.5:p.Thr208Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20462C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20462C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2261C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2228C>G
  hgvsp: ENSP00000426290.1:p.Thr743Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11301C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20462C>G
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15025
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2936
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr208Ser
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/6-54013870-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013870
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013870
    reference: chr 6
allele count: 1
allele frequency: 8.270751315049459e-6
allele num: 120908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20456C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20456C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11295C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2234C>A
  hgvsp: ENSP00000426290.1:p.Ser745Ter
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2201C>A
  hgvsp: ENSP00000425142.1:p.Ser734Ter
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2267C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20456C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11295C>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.275C>A
  hgvsp: ENSP00000411917.2:p.Ser92Ter
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.629C>A
  hgvsp: ENSP00000274897.5:p.Ser210Ter
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser210Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

6-54013873-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013873
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013873
    reference: chr 6
allele count: 12
allele frequency: 9.924080782017565e-5
allele num: 120918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2237G>A
  hgvsp: ENSP00000426290.1:p.Ser746Asn
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2204G>A
  hgvsp: ENSP00000425142.1:p.Ser735Asn
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20453G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11292G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20453G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.632G>A
  hgvsp: ENSP00000274897.5:p.Ser211Asn
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.278G>A
  hgvsp: ENSP00000411917.2:p.Ser93Asn
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2270G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11292G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20453G>A
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser211Asn
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

6-54013874-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013874
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013874
    reference: chr 6
allele count: 1
allele frequency: 8.268973158913126e-6
allele num: 120934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20452C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2205C>T
  hgvsp: ENST00000514921.1:c.2205C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2238C>T
  hgvsp: ENST00000502396.1:c.2238C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.633C>T
  hgvsp: ENST00000274897.5:c.633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11291C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.279C>T
  hgvsp: ENST00000447836.2:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20452C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2271C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11291C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20452C>T
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser211Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

6-54013890-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013890
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013890
    reference: chr 6
allele count: 4
allele frequency: 3.30611300294244e-5
allele num: 120988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.295G>A
  hgvsp: ENSP00000411917.2:p.Ala99Thr
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20436G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20436G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20436G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.649G>A
  hgvsp: ENSP00000274897.5:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11275G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2254G>A
  hgvsp: ENSP00000426290.1:p.Ala752Thr
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2287G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2221G>A
  hgvsp: ENSP00000425142.1:p.Ala741Thr
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11275G>A
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala217Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

6-54013890-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013890
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013890
    reference: chr 6
allele count: 1
allele frequency: 8.265282507356101e-6
allele num: 120988
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.649G>T
  hgvsp: ENSP00000274897.5:p.Ala217Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20436G>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11275G>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2254G>T
  hgvsp: ENSP00000426290.1:p.Ala752Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2287G>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20436G>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2221G>T
  hgvsp: ENSP00000425142.1:p.Ala741Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20436G>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.295G>T
  hgvsp: ENSP00000411917.2:p.Ala99Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11275G>T
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala217Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

6-54013891-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013891
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013891
    reference: chr 6
allele count: 1
allele frequency: 8.265145879824779e-6
allele num: 120990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11274C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2255C>T
  hgvsp: ENSP00000426290.1:p.Ala752Val
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20435C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2222C>T
  hgvsp: ENSP00000425142.1:p.Ala741Val
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.650C>T
  hgvsp: ENSP00000274897.5:p.Ala217Val
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2288C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.296C>T
  hgvsp: ENSP00000411917.2:p.Ala99Val
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20435C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20435C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11274C>T
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala217Val
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

6-54013899-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013899
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013899
    reference: chr 6
allele count: 1
allele frequency: 8.264736024331383e-6
allele num: 120996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2263A>G
  hgvsp: ENSP00000426290.1:p.Thr755Ala
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11266A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.658A>G
  hgvsp: ENSP00000274897.5:p.Thr220Ala
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2296A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20427A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20427A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11266A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2230A>G
  hgvsp: ENSP00000425142.1:p.Thr744Ala
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20427A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.304A>G
  hgvsp: ENSP00000411917.2:p.Thr102Ala
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34022
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr220Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

6-54013912-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013912
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013912
    reference: chr 6
allele count: 1
allele frequency: 8.267879288962381e-6
allele num: 120950
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2309T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2276T>C
  hgvsp: ENSP00000426290.1:p.Leu759Pro
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.671T>C
  hgvsp: ENSP00000274897.5:p.Leu224Pro
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11253T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11253T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20414T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2243T>C
  hgvsp: ENSP00000425142.1:p.Leu748Pro
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20414T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.317T>C
  hgvsp: ENSP00000411917.2:p.Leu106Pro
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20414T>C
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu224Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

6-54013919-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013919
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013919
    reference: chr 6
allele count: 1
allele frequency: 8.271024945411235e-6
allele num: 120904
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2250A>G
  hgvsp: ENST00000514921.1:c.2250A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.678A>G
  hgvsp: ENST00000274897.5:c.678A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20407A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2316A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2283A>G
  hgvsp: ENST00000502396.1:c.2283A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.324A>G
  hgvsp: ENST00000447836.2:c.324A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20407A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11246A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11246A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20407A>G
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu226Glu
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

6-54013928-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013928
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013928
    reference: chr 6
allele count: 32
allele frequency: 2.649006622516556e-4
allele num: 120800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2256+3C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11237C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20398C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.684+3C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20398C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11237C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.330+3C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2322+3C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2289+3C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20398C>T
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33762
  bin: 6.25e1
  variant carriers: 0
hgvs: c.684+3C>T
num of homozygotes: 1
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

6-54013941-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013941
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013941
    reference: chr 6
allele count: 1
allele frequency: 8.312137383006666e-6
allele num: 120306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11224A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2256+16A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20385A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20385A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.330+16A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11224A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2289+16A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20385A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.684+16A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2322+16A>G
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

6-54013945-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013945
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013945
    reference: chr 6
allele count: 1
allele frequency: 8.323068215867098e-6
allele num: 120148
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.684+20C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11220C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20381C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2289+20C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11220C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20381C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2256+20C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20381C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2322+20C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.330+20C>G
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9764
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5330
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

6-54013945-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013945
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013945
    reference: chr 6
allele count: 1
allele frequency: 8.323068215867098e-6
allele num: 120148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2256+20C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20381C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.330+20C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20381C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11220C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2289+20C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11220C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2322+20C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.684+20C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20381C>T
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5330
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

6-54013955-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013955
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013955
    reference: chr 6
allele count: 1
allele frequency: 8.359806052499582e-6
allele num: 119620
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20371T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11210T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20371T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.684+30T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2322+30T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.330+30T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20371T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11210T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2289+30T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2256+30T>C
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

6-54013956-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013956
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013956
    reference: chr 6
allele count: 4
allele frequency: 3.345040976751965e-5
allele num: 119580
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2322+31A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2256+31A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.684+31A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20370A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2289+31A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.330+31A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11209A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11209A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20370A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20370A>G
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19312
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10007
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3612
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27599
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

6-54013965-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013965
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013965
    reference: chr 6
allele count: 1
allele frequency: 8.401384548173538e-6
allele num: 119028
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2322+40A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11200A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20361A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2289+40A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11200A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.684+40A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20361A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.330+40A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20361A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2256+40A>G
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5314
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3899
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

6-54013972-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54013972
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54013972
    reference: chr 6
allele count: 2
allele frequency: 1.716708726030454e-5
allele num: 116502
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2256+47T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-11193T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.684+47T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-20354T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2289+47T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-11193T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.330+47T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-20354T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-20354T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2322+47T>C
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13340
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4529
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD

6-54025130-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025130
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025130
    reference: chr 6
allele count: 13
allele frequency: 1.17572578457086e-4
allele num: 110570
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.685-35A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-35A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2323-35A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9196A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2257-35A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.331-35A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2290-35A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9196A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-35A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9196A>G
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9009
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9404
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4079
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23959
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

6-54025139-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025139
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025139
    reference: chr 6
allele count: 1
allele frequency: 8.938627384378855e-6
allele num: 111874
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9187A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2257-26A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.685-26A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9187A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2290-26A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2323-26A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-26A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.331-26A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-26A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9187A>G
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5316
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2827
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/6-54025145-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025145
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025144
    reference: chr 6
allele count: 2
allele frequency: 1.766815668121345e-5
allele num: 113198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9180delC
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.331-19delC
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-19delC
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9180delC
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.685-19delC
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-19delC
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2323-19delC
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2257-19delC
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2290-19delC
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9180delC
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10698
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3702
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: AC
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

6-54025148-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025148
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025148
    reference: chr 6
allele count: 1
allele frequency: 8.800647727672756e-6
allele num: 113628
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-17A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9178A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.685-17A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-17A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.331-17A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9178A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9178A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2290-17A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2257-17A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2323-17A>G
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32522
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

6-54025155-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025155
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025155
    reference: chr 6
allele count: 11382
allele frequency: 9.831222899787517e-2
allele num: 115774
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9171T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9171T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2290-10T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.685-10T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2257-10T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2323-10T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.331-10T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-10T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9171T>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-10T>C
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 7.5e0
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 1.75e1
  variant carriers: 607
genotype depth: GenotypeDepth
  all individuals: 11006
  bin: 2.75e1
  variant carriers: 1400
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.25e1
  variant carriers: 632
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.75e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.25e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 3.25e1
  variant carriers: 1488
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 3.75e1
  variant carriers: 1419
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.75e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 1.25e1
  variant carriers: 261
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.75e1
  variant carriers: 423
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 4.25e1
  variant carriers: 1263
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 28080
  bin: 2.25e1
  variant carriers: 1011
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 4.75e1
  variant carriers: 977
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 138
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 2.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 2.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 4786
  bin: 6.75e1
  variant carriers: 47
num of homozygotes: 805
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

6-54025157-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025157
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025157
    reference: chr 6
allele count: 1
allele frequency: 8.603186620324168e-6
allele num: 116236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9169G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9169G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.685-8G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-8G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.331-8G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2323-8G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-8G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2290-8G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9169G>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2257-8G>A
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 7.25e1
  variant carriers: 0
hgvs: c.685-8G>A
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum

6-54025159-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025159
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025159
    reference: chr 6
allele count: 1
allele frequency: 8.58000858000858e-6
allele num: 116550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2323-6C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9167C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.331-6C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2257-6C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9167C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-6C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-6C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2290-6C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9167C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.685-6C>T
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13612
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
hgvs: c.685-6C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

6-54025161-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025161
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025161
    reference: chr 6
allele count: 1
allele frequency: 8.556808652644909e-6
allele num: 116866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9165C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457-4C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616-4C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9165C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2323-4C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2257-4C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2290-4C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.331-4C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.685-4C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9165C>G
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 3.25e1
  variant carriers: 0
hgvs: c.685-4C>G
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

6-54025165-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025165
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025165
    reference: chr 6
allele count: 4
allele frequency: 3.410524879778998e-5
allele num: 117284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9161G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.331G>C
  hgvsp: ENSP00000411917.2:p.Ala111Pro
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.616G>C
  hgvsp: ENSP00000421444.1:p.Ala206Pro
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9161G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.457G>C
  hgvsp: ENSP00000359914.2:p.Ala153Pro
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9161G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2290G>C
  hgvsp: ENSP00000426290.1:p.Ala764Pro
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.685G>C
  hgvsp: ENSP00000274897.5:p.Ala229Pro
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2257G>C
  hgvsp: ENSP00000425142.1:p.Ala753Pro
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2323G>C
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29725
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13981
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala229Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

6-54025173-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025173
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025173
    reference: chr 6
allele count: 6
allele frequency: 5.085435313262815e-5
allele num: 117984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2298T>A
  hgvsp: ENSP00000426290.1:p.Asp766Glu
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2265T>A
  hgvsp: ENSP00000425142.1:p.Asp755Glu
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.339T>A
  hgvsp: ENSP00000411917.2:p.Asp113Glu
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.624T>A
  hgvsp: ENSP00000421444.1:p.Asp208Glu
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2331T>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.465T>A
  hgvsp: ENSP00000359914.2:p.Asp155Glu
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9153T>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9153T>A
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.693T>A
  hgvsp: ENSP00000274897.5:p.Asp231Glu
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9153T>A
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35618
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp231Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

6-54025177-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025177
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025177
    reference: chr 6
allele count: 1
allele frequency: 8.456230550669733e-6
allele num: 118256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2269C>G
  hgvsp: ENSP00000425142.1:p.Pro757Ala
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.628C>G
  hgvsp: ENSP00000421444.1:p.Pro210Ala
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.343C>G
  hgvsp: ENSP00000411917.2:p.Pro115Ala
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9149C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9149C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2302C>G
  hgvsp: ENSP00000426290.1:p.Pro768Ala
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.469C>G
  hgvsp: ENSP00000359914.2:p.Pro157Ala
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9149C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.697C>G
  hgvsp: ENSP00000274897.5:p.Pro233Ala
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2335C>G
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5410
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro233Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

6-54025182-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025182
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025182
    reference: chr 6
allele count: 1
allele frequency: 8.433836552247617e-6
allele num: 118570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.633C>G
  hgvsp: ENST00000514433.1:c.633C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2274C>G
  hgvsp: ENST00000514921.1:c.2274C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.348C>G
  hgvsp: ENST00000447836.2:c.348C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2307C>G
  hgvsp: ENST00000502396.1:c.2307C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2340C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.474C>G
  hgvsp: ENST00000370877.2:c.474C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9144C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9144C>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.702C>G
  hgvsp: ENST00000274897.5:c.702C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9144C>G
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala234Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

6-54025205-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025205
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025205
    reference: chr 6
allele count: 1
allele frequency: 8.372404554588077e-6
allele num: 119440
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.371A>G
  hgvsp: ENSP00000411917.2:p.Asp124Gly
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2297A>G
  hgvsp: ENSP00000425142.1:p.Asp766Gly
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.725A>G
  hgvsp: ENSP00000274897.5:p.Asp242Gly
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.497A>G
  hgvsp: ENSP00000359914.2:p.Asp166Gly
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2330A>G
  hgvsp: ENSP00000426290.1:p.Asp777Gly
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9121A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9121A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2363A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9121A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.656A>G
  hgvsp: ENSP00000421444.1:p.Asp219Gly
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp242Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

6-54025205-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025205
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025205
    reference: chr 6
allele count: 63
allele frequency: 5.274614869390489e-4
allele num: 119440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.656A>T
  hgvsp: ENSP00000421444.1:p.Asp219Val
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2297A>T
  hgvsp: ENSP00000425142.1:p.Asp766Val
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9121A>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.725A>T
  hgvsp: ENSP00000274897.5:p.Asp242Val
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.497A>T
  hgvsp: ENSP00000359914.2:p.Asp166Val
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2330A>T
  hgvsp: ENSP00000426290.1:p.Asp777Val
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9121A>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9121A>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2363A>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.371A>T
  hgvsp: ENSP00000411917.2:p.Asp124Val
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15369
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30358
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp242Val
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

6-54025209-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025209
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025209
    reference: chr 6
allele count: 2
allele frequency: 1.673752217721688e-5
allele num: 119492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9117C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.729C>T
  hgvsp: ENST00000274897.5:c.729C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.501C>T
  hgvsp: ENST00000370877.2:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2367C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.375C>T
  hgvsp: ENST00000447836.2:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9117C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2301C>T
  hgvsp: ENST00000514921.1:c.2301C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2334C>T
  hgvsp: ENST00000502396.1:c.2334C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9117C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.660C>T
  hgvsp: ENST00000514433.1:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15450
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30293
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn243Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

6-54025215-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025215
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025215
    reference: chr 6
allele count: 22
allele frequency: 1.839987956442467e-4
allele num: 119566
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2307A>G
  hgvsp: ENST00000514921.1:c.2307A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2373A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.666A>G
  hgvsp: ENST00000514433.1:c.666A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.381A>G
  hgvsp: ENST00000447836.2:c.381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.735A>G
  hgvsp: ENST00000274897.5:c.735A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9111A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9111A>G
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.507A>G
  hgvsp: ENST00000370877.2:c.507A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2340A>G
  hgvsp: ENST00000502396.1:c.2340A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9111A>G
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30275
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7018
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu245Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

6-54025216-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025216
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025216
    reference: chr 6
allele count: 1
allele frequency: 8.362462577979963e-6
allele num: 119582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.382G>C
  hgvsp: ENSP00000411917.2:p.Glu128Gln
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2341G>C
  hgvsp: ENSP00000426290.1:p.Glu781Gln
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.508G>C
  hgvsp: ENSP00000359914.2:p.Glu170Gln
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9110G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9110G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.736G>C
  hgvsp: ENSP00000274897.5:p.Glu246Gln
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2308G>C
  hgvsp: ENSP00000425142.1:p.Glu770Gln
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.667G>C
  hgvsp: ENSP00000421444.1:p.Glu223Gln
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2374G>C
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9110G>C
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu246Gln
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

6-54025219-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54025219
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 54025219
    reference: chr 6
allele count: 1
allele frequency: 8.359806052499582e-6
allele num: 119620
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000274897
  ensembl transcript: ENST00000274897
  gene symbol: MLIP
  hgvsc: ENST00000274897.5:c.739C>T
  hgvsp: ENSP00000274897.5:p.Pro247Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000426290
  ensembl transcript: ENST00000502396
  gene symbol: MLIP
  hgvsc: ENST00000502396.1:c.2344C>T
  hgvsp: ENSP00000426290.1:p.Pro782Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359914
  ensembl transcript: ENST00000370877
  gene symbol: MLIP
  hgvsc: ENST00000370877.2:c.511C>T
  hgvsp: ENSP00000359914.2:p.Pro171Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000427584
  ensembl transcript: ENST00000509997
  gene symbol: MLIP
  hgvsc: ENST00000509997.1:c.457-9107C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000411917
  ensembl transcript: ENST00000447836
  gene symbol: MLIP
  hgvsc: ENST00000447836.2:c.385C>T
  hgvsp: ENSP00000411917.2:p.Pro129Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000421444
  ensembl transcript: ENST00000514433
  gene symbol: MLIP
  hgvsc: ENST00000514433.1:c.670C>T
  hgvsp: ENSP00000421444.1:p.Pro224Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000359913
  ensembl transcript: ENST00000370876
  gene symbol: MLIP
  hgvsc: ENST00000370876.2:c.427-9107C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000425142
  ensembl transcript: ENST00000514921
  gene symbol: MLIP
  hgvsc: ENST00000514921.1:c.2311C>T
  hgvsp: ENSP00000425142.1:p.Pro771Ser
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146147
  ensembl protein: ENSP00000351019
  ensembl transcript: ENST00000358276
  gene symbol: MLIP
  hgvsc: ENST00000358276.5:c.595-9107C>T
  variant of: http://identifiers.org/hgnc/21355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146147
  ensembl transcript: ENST00000511744
  gene symbol: MLIP
  hgvsc: ENST00000511744.1:n.2377C>T
  variant of: http://identifiers.org/hgnc/21355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro247Ser
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2411
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.249343832020997e-4
allele num: 7620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.0e-2
allele num: 200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.768549280177187e-4
allele num: 3612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e0

QD
type: SiteQuality
SIO_000300: 1.788e1

DP
type: SiteQuality
SIO_000300: 1.63034e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.31e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 1.872e0

VQSLOD
type: SiteQuality
SIO_000300: 5.45e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2739
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5174
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.838235294117647e-3
allele num: 544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-2

QD
type: SiteQuality
SIO_000300: 1.338e1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.85e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 4.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.06e-1

DP
type: SiteQuality
SIO_000300: 1.63835e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 608
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5194
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3000
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3622
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.597e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.16e-2

MQ
type: SiteQuality
SIO_000300: 5.913e1

MQRankSum
type: SiteQuality
SIO_000300: -6.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 1.3837e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.65139e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.387e0

QD
type: SiteQuality
SIO_000300: 7.92e0

GenotypeQuality
all individuals: 10
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5199
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3136
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.598e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 1.65407e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.32e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.91e0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5210
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.213e0

DP
type: SiteQuality
SIO_000300: 1.6709e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.14e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

MQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.54e-2

QD
type: SiteQuality
SIO_000300: 9.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5211
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 98
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4803
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 7.194244604316547e-3
allele num: 556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3620
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.648e0

FS
type: SiteQuality
SIO_000300: 3.217e0

MQRankSum
type: SiteQuality
SIO_000300: 4.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 1.70386e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.36e-2

QD
type: SiteQuality
SIO_000300: 1.335e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-2

GenotypeQuality
all individuals: 4406
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.319148936170213e-3
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.250721974271463e-4
allele num: 7618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.469e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.349e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

DP
type: SiteQuality
SIO_000300: 1.67984e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.19e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.067e-1

FS
type: SiteQuality
SIO_000300: 2.456e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.22e-1

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5195
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3922
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 129
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312680493567866e-4
allele num: 7618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
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VQSLOD
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ClippingRankSum
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DP
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InbreedingCoeff
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MQ
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QD
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FS
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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Other
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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ClippingRankSum
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DP
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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Other
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European (Finnish)
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East Asian
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
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DP
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ReadPosRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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South Asian
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Other
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African
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European (Non-Finnish)
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MQRankSum
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DP
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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East Asian
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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DP
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VQSLOD
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ReadPosRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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East Asian
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South Asian
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Latino
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MQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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QD
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DP
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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FS
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DP
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MQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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MQ
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QD
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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DP
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GenotypeQuality
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European (Non-Finnish)
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Latino
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European (Finnish)
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South Asian
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African
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East Asian
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VQSLOD
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DP
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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Other
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European (Non-Finnish)
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Latino
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East Asian
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FS
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InbreedingCoeff
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BaseQRankSum
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MQ
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ReadPosRankSum
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QD
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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African
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East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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MQ
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VQSLOD
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BaseQRankSum
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FS
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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European (Finnish)
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African
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South Asian
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East Asian
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Latino
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ReadPosRankSum
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QD
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VQSLOD
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FS
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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Latino
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East Asian
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Other
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VQSLOD
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MQ
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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QD
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BaseQRankSum
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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Latino
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European (Non-Finnish)
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Other
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BaseQRankSum
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QD
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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ReadPosRankSum
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DP
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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European (Finnish)
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FS
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MQRankSum
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VQSLOD
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MQ
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DP
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ClippingRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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Latino
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Other
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South Asian
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FS
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VQSLOD
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MQ
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BaseQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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QD
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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East Asian
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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ReadPosRankSum
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QD
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VQSLOD
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MQ
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DP
type: SiteQuality
SIO_000300: 1.861543e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.751927119831815e-4
allele num: 11416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509798592867711e-5
allele num: 66234
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 71
allele frequency: 6.844033159822634e-3
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: 5.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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SIO_000300: 1.567e1

MQ
type: SiteQuality
SIO_000300: 5.99e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508614187007815e-5
allele num: 66286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.001e0

QD
type: SiteQuality
SIO_000300: 1.196e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.23e-1

DP
type: SiteQuality
SIO_000300: 1.876302e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.625590757920532e-4
allele num: 11426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.923e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

VQSLOD
type: SiteQuality
SIO_000300: 5.37e-1

DP
type: SiteQuality
SIO_000300: 1.878604e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 5.78e0

QD
type: SiteQuality
SIO_000300: 1.309e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174536058256989e-4
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.146e0

MQRankSum
type: SiteQuality
SIO_000300: -1.05e0

VQSLOD
type: SiteQuality
SIO_000300: 2.3e-1

DP
type: SiteQuality
SIO_000300: 1.879914e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.493e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.33e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012683397101799e-5
allele num: 66386
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.065e1

MQRankSum
type: SiteQuality
SIO_000300: 7.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.19e-1

FS
type: SiteQuality
SIO_000300: 3.895e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.388e0

DP
type: SiteQuality
SIO_000300: 1.881474e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.03e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.518344478583047e-5
allele num: 66396
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 1.621e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

DP
type: SiteQuality
SIO_000300: 1.881934e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 3.848374061958822e-4
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.863039399624766e-4
allele num: 8528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.38e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 6.21e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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BaseQRankSum
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SIO_000300: -1.824e0

VQSLOD
type: SiteQuality
SIO_000300: 2.91e0

DP
type: SiteQuality
SIO_000300: 1.882667e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505661286437003e-5
allele num: 66416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.131e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
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SIO_000300: 1.26e0

VQSLOD
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SIO_000300: 7.35e-1

QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.722958827634333e-5
allele num: 11464
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
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QD
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BaseQRankSum
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MQ
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SIO_000300: 5.977e1

FS
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.007880647295915e-5
allele num: 66492
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

FS
type: SiteQuality
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MQ
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SIO_000300: 5.956e1

ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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SIO_000300: 4.28e-1

InbreedingCoeff
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SIO_000300: -2.0e-4

VQSLOD
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DP
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SIO_000300: 1.885563e6

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66508
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East Asian
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allele num: 8566
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South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6580
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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ReadPosRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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VQSLOD
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MQ
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BaseQRankSum
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MQRankSum
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FS
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 12
allele frequency: 1.804402742692169e-4
allele num: 66504
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
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SIO_000300: 1.886875e6

MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66512
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2524e1

VQSLOD
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.93e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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DP
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ClippingRankSum
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MQRankSum
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VQSLOD
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6586
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Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.50271992306074e-5
allele num: 66546
num of homozygotes: 0

FS
type: SiteQuality
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ReadPosRankSum
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DP
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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MQ
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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South Asian
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MQ
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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FS
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DP
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MQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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ReadPosRankSum
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SIO_000300: 1.16e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.715356458079135e-5
allele num: 11474
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
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African
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 1.532e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
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SIO_000300: 4.79e-1

BaseQRankSum
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SIO_000300: 3.32e0

QD
type: SiteQuality
SIO_000300: 9.859999999999999e0

DP
type: SiteQuality
SIO_000300: 1.886994e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 9.01e-1

DP
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ReadPosRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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SIO_000300: -2.0e-4

MQ
type: SiteQuality
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ClippingRankSum
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SIO_000300: -9.61e-1

FS
type: SiteQuality
SIO_000300: 3.27e0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
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South Asian
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allele frequency: 6.06501698204755e-5
allele num: 16488
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66502
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: -3.0e-4

QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

VQSLOD
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MQ
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MQRankSum
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BaseQRankSum
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FS
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SIO_000300: 3.851e0

ClippingRankSum
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SIO_000300: 1.01e0

DP
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SIO_000300: 1.885429e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

African
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allele count: 30
allele frequency: 2.885170225043278e-3
allele num: 10398
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.722958827634333e-5
allele num: 11464
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66442
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.679e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.885132e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66136
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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East Asian
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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FS
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VQSLOD
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.885e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
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DP
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SIO_000300: 1.870079e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
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allele num: 10350
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66042
num of homozygotes: 0

South Asian
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InbreedingCoeff
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VQSLOD
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DP
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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MQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66042
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
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African
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South Asian
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 65724
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Other
type: Population
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East Asian
type: Population
allele count: 0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele num: 10300
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.226e0

ClippingRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.515556336790297e-4
allele num: 11378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65710
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

ReadPosRankSum
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529145513487063e-5
allele num: 65396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.71712e6

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.741e0

InbreedingCoeff
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SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

VQSLOD
type: SiteQuality
SIO_000300: -2.713e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

East Asian
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allele count: 1
allele frequency: 1.250312578144536e-4
allele num: 7998
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.566366968453369e-5
allele num: 63842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9990
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.086e0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

DP
type: SiteQuality
SIO_000300: 1.639527e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e-1

FS
type: SiteQuality
SIO_000300: 2.436e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.721e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 13

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7326
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.565018912221208e-4
allele num: 15334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9336
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.782415136338342e-4
allele num: 10782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.952947003467063e-5
allele num: 60570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

DP
type: SiteQuality
SIO_000300: 1.391483e6

FS
type: SiteQuality
SIO_000300: 7.963e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.501e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeQuality
all individuals: 50
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.631747274982051e-5
allele num: 61284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9522
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

FS
type: SiteQuality
SIO_000300: 1.207e0

MQ
type: SiteQuality
SIO_000300: 5.812e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.711e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.18e0

MQRankSum
type: SiteQuality
SIO_000300: 7.68e-1

QD
type: SiteQuality
SIO_000300: 1.712e1

VQSLOD
type: SiteQuality
SIO_000300: -1.303e0

DP
type: SiteQuality
SIO_000300: 1.450759e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.224662216632808e-5
allele num: 62022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 6.043e1

FS
type: SiteQuality
SIO_000300: 8.587e0

VQSLOD
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SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.605806596653499e-5
allele num: 62274
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.44e-1

QD
type: SiteQuality
SIO_000300: 1.275e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.247e0

DP
type: SiteQuality
SIO_000300: 1.499881e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e0

VQSLOD
type: SiteQuality
SIO_000300: 3.83e-1

GenotypeQuality
all individuals: 365
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variant carriers: 34

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 266
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variant carriers: 23

GenotypeQuality
all individuals: 573
bin: 8.75e1
variant carriers: 50

European (Non-Finnish)
type: Population
allele count: 4128
allele frequency: 6.509808868983788e-2
allele num: 63412
num of homozygotes: 149

South Asian
type: Population
allele count: 2478
allele frequency: 1.552826168692819e-1
allele num: 15958
num of homozygotes: 224

East Asian
type: Population
allele count: 2059
allele frequency: 2.540093757710338e-1
allele num: 8106
num of homozygotes: 259

African
type: Population
allele count: 592
allele frequency: 5.99311601538773e-2
allele num: 9878
num of homozygotes: 18

Other
type: Population
allele count: 109
allele frequency: 1.227477477477477e-1
allele num: 888
num of homozygotes: 5

Latino
type: Population
allele count: 1702
allele frequency: 1.53360965939809e-1
allele num: 11098
num of homozygotes: 143

European (Finnish)
type: Population
allele count: 314
allele frequency: 4.880323282561393e-2
allele num: 6434
num of homozygotes: 7

QD
type: SiteQuality
SIO_000300: 1.639e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.32e-2

FS
type: SiteQuality
SIO_000300: 1.543e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

DP
type: SiteQuality
SIO_000300: 1.690321e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5402
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GenotypeQuality
all individuals: 409
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GenotypeQuality
all individuals: 945
bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.25312656328164e-5
allele num: 15992
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63662
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: -9.421e-1

MQRankSum
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

FS
type: SiteQuality
SIO_000300: 3.508e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.746e0

DP
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SIO_000300: 1.604467e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.353e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 6.240639041437844e-5
allele num: 16024
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MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -4.6e-2

MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.342e0

DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
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SIO_000300: 1.464e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64066
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.933357155619081e-5
allele num: 11194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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QD
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.281e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.081e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

DP
type: SiteQuality
SIO_000300: 1.615558e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.966115208291808e-5
allele num: 10034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.66345406497746e-5
allele num: 64330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.624347e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-2

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.346e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 6
allele frequency: 5.926511260371395e-4
allele num: 10124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64758
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-2

BaseQRankSum
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SIO_000300: 8.9e-1

MQRankSum
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QD
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

FS
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SIO_000300: 0.0e0

DP
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SIO_000300: 1.635654e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.53997782431933e-5
allele num: 64936
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6486
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQ
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MQRankSum
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FS
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534636751480924e-5
allele num: 65162
num of homozygotes: 0

Other
type: Population
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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InbreedingCoeff
type: SiteQuality
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FS
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
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MQ
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QD
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522116350573838e-5
allele num: 65698
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.664873e6

InbreedingCoeff
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FS
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VQSLOD
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MQ
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SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

QD
type: SiteQuality
SIO_000300: 1.114e1

GenotypeQuality
all individuals: 210
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 36654
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5465
bin: 9.75e1
variant carriers: 61

GenotypeQuality
all individuals: 161
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6971
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2940
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 885
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 58
allele frequency: 8.82827483332826e-4
allele num: 65698
num of homozygotes: 1

African
type: Population
allele count: 1
allele frequency: 9.720062208398134e-5
allele num: 10288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.144393241167435e-4
allele num: 6510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.664873e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

QD
type: SiteQuality
SIO_000300: 1.114e1

GenotypeQuality
all individuals: 5415
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2936
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36650
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6991
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.042658066086533e-5
allele num: 65732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.88e-1

DP
type: SiteQuality
SIO_000300: 1.665136e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.483e0

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

FS
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e-1

GenotypeQuality
all individuals: 161
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5422
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2932
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36747
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1876
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 22
allele frequency: 1.945525291828794e-3
allele num: 11308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65790
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.666766e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.46e1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.1e0

GenotypeQuality
all individuals: 168
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5405
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2934
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2563
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36823
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7013
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.101281269066504e-5
allele num: 16390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-2

FS
type: SiteQuality
SIO_000300: 5.287e0

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.82e-1

DP
type: SiteQuality
SIO_000300: 1.666714e6

QD
type: SiteQuality
SIO_000300: 1.129e1

MQ
type: SiteQuality
SIO_000300: 6.0e1