9-139562799-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562799
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562799
    reference: chr 9
allele count: 1
allele frequency: 1.242266888618351e-5
allele num: 80498
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.65A>T
  hgvsp: ENSP00000473338.1:p.His22Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.65A>T
  hgvsp: ENSP00000360763.3:p.His22Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-210A>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-210A>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.65A>T
  hgvsp: ENSP00000360764.1:p.His22Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.65A>T
  hgvsp: ENSP00000385639.3:p.His22Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.65A>T
  hgvsp: ENSP00000307843.7:p.His22Leu
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18132
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3292
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3399
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24238
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His22Leu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-139562800-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562800
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562800
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 80112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.66C>A
  hgvsp: ENSP00000473338.1:p.His22Gln
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.66C>A
  hgvsp: ENSP00000360763.3:p.His22Gln
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.66C>A
  hgvsp: ENSP00000360764.1:p.His22Gln
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-209C>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-209C>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.66C>A
  hgvsp: ENSP00000385639.3:p.His22Gln
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.66C>A
  hgvsp: ENSP00000307843.7:p.His22Gln
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17802
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24516
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His22Gln
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

9-139562800-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562800
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562800
    reference: chr 9
allele count: 23
allele frequency: 2.870980627122029e-4
allele num: 80112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.66C>T
  hgvsp: ENST00000308874.7:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.66C>T
  hgvsp: ENST00000406555.3:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-209C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.66C>T
  hgvsp: ENST00000492862.2:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-209C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.66C>T
  hgvsp: ENST00000371698.3:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.66C>T
  hgvsp: ENST00000371699.1:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17802
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16124
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13696
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His22His
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

9-139562801-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562801
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562801
    reference: chr 9
allele count: 149
allele frequency: 1.861987953312839e-3
allele num: 80022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.67G>A
  hgvsp: ENSP00000307843.7:p.Ala23Thr
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.67G>A
  hgvsp: ENSP00000360763.3:p.Ala23Thr
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-208G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.67G>A
  hgvsp: ENSP00000360764.1:p.Ala23Thr
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.67G>A
  hgvsp: ENSP00000473338.1:p.Ala23Thr
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-208G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.67G>A
  hgvsp: ENSP00000385639.3:p.Ala23Thr
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17778
  bin: 7.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15864
  bin: 2.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13922
  bin: 1.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 1.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 9.75e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 24595
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17046
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3438
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 6.75e1
  variant carriers: 3
hgvs: p.Ala23Thr
num of homozygotes: 2
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/9-139562805-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562805
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562805
    reference: chr 9
allele count: 1
allele frequency: 1.255618894553125e-5
allele num: 79642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.71A>C
  hgvsp: ENSP00000307843.7:p.Tyr24Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.71A>C
  hgvsp: ENSP00000473338.1:p.Tyr24Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.71A>C
  hgvsp: ENSP00000385639.3:p.Tyr24Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-204A>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.71A>C
  hgvsp: ENSP00000360763.3:p.Tyr24Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-204A>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.71A>C
  hgvsp: ENSP00000360764.1:p.Tyr24Ser
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3716
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16233
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr24Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

9-139562805-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562805
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562805
    reference: chr 9
allele count: 2
allele frequency: 2.51123778910625e-5
allele num: 79642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.71A>G
  hgvsp: ENSP00000473338.1:p.Tyr24Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.71A>G
  hgvsp: ENSP00000307843.7:p.Tyr24Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.71A>G
  hgvsp: ENSP00000385639.3:p.Tyr24Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.71A>G
  hgvsp: ENSP00000360763.3:p.Tyr24Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-204A>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.71A>G
  hgvsp: ENSP00000360764.1:p.Tyr24Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-204A>G
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16233
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr24Cys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

9-139562807-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562807
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562807
    reference: chr 9
allele count: 1
allele frequency: 1.265502404454569e-5
allele num: 79020
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.73C>T
  hgvsp: ENSP00000307843.7:p.Arg25Trp
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-202C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.73C>T
  hgvsp: ENSP00000360763.3:p.Arg25Trp
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.73C>T
  hgvsp: ENSP00000385639.3:p.Arg25Trp
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.73C>T
  hgvsp: ENSP00000473338.1:p.Arg25Trp
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.73C>T
  hgvsp: ENSP00000360764.1:p.Arg25Trp
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-202C>T
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2294
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15688
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg25Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

9-139562808-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562808
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562808
    reference: chr 9
allele count: 6
allele frequency: 7.586294095334429e-5
allele num: 79090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.74G>A
  hgvsp: ENSP00000307843.7:p.Arg25Gln
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.74G>A
  hgvsp: ENSP00000360764.1:p.Arg25Gln
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-201G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.74G>A
  hgvsp: ENSP00000473338.1:p.Arg25Gln
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-201G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.74G>A
  hgvsp: ENSP00000385639.3:p.Arg25Gln
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.74G>A
  hgvsp: ENSP00000360763.3:p.Arg25Gln
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18019
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13996
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg25Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

9-139562808-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562808
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562808
    reference: chr 9
allele count: 1
allele frequency: 1.264382349222405e-5
allele num: 79090
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.74G>T
  hgvsp: ENSP00000360764.1:p.Arg25Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.74G>T
  hgvsp: ENSP00000473338.1:p.Arg25Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-201G>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.74G>T
  hgvsp: ENSP00000360763.3:p.Arg25Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.74G>T
  hgvsp: ENSP00000307843.7:p.Arg25Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-201G>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.74G>T
  hgvsp: ENSP00000385639.3:p.Arg25Leu
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18019
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13996
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3911
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15710
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg25Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

9-139562809-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562809
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562809
    reference: chr 9
allele count: 3
allele frequency: 3.825652273712668e-5
allele num: 78418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.75G>A
  hgvsp: ENST00000308874.7:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.75G>A
  hgvsp: ENST00000371699.1:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.75G>A
  hgvsp: ENST00000406555.3:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.75G>A
  hgvsp: ENST00000492862.2:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.75G>A
  hgvsp: ENST00000371698.3:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-200G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-200G>A
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16366
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13421
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26070
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg25Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

9-139562813-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562813
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562813
    reference: chr 9
allele count: 17
allele frequency: 2.174858634188778e-4
allele num: 78166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.79G>A
  hgvsp: ENSP00000385639.3:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.79G>A
  hgvsp: ENSP00000307843.7:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.79G>A
  hgvsp: ENSP00000360764.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.79G>A
  hgvsp: ENSP00000473338.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.79G>A
  hgvsp: ENSP00000360763.3:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-196G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-196G>A
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18167
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12769
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16802
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26698
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly27Ser
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

9-139562815-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562815
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562815
    reference: chr 9
allele count: 2
allele frequency: 2.563182447326601e-5
allele num: 78028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.80+1G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-194G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.80+1G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.80+1G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.80+1G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-194G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.80+1G>C
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17390
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2683
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4291
  bin: 3.25e1
  variant carriers: 0
hgvs: c.80+1G>C
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

9-139562819-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562819
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562819
    reference: chr 9
allele count: 1
allele frequency: 1.297117804238981e-5
allele num: 77094
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.80+5G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.80+5G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-190G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.80+5G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-190G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.80+5G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.80+5G>C
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10226
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2979
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4730
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4620
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
hgvs: c.80+5G>C
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-139562824-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562824
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562824
    reference: chr 9
allele count: 2
allele frequency: 2.637756851573422e-5
allele num: 75822
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-185G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.80+10G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.80+10G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.80+10G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.80+10G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.80+10G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-185G>A
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6178
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20072
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5082
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3585
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5535
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8467
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2772
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

9-139562834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562834
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562834
    reference: chr 9
allele count: 1
allele frequency: 1.400677928117209e-5
allele num: 71394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-175G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.80+20G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.80+20G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.80+20G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-175G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.80+20G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.80+20G>A
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5536
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5010
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6313
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

9-139562842-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562842
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562842
    reference: chr 9
allele count: 59
allele frequency: 8.405276804285267e-4
allele num: 70194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-167T>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-167T>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.80+28T>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.80+28T>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.80+28T>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.80+28T>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.80+28T>C
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19379
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20453
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25764
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3587
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

9-139562842-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562842
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562841
    reference: chr 9
allele count: 1
allele frequency: 1.424623187166994e-5
allele num: 70194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-163delG
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.80+32delG
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-163delG
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.80+32delG
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.80+32delG
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.80+32delG
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.80+32delG
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19379
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4308
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3587
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25764
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: TG
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

9-139562848-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562848
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562848
    reference: chr 9
allele count: 1
allele frequency: 1.515289268721399e-5
allele num: 65994
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-161G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.80+34G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-161G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.80+34G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.80+34G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.80+34G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.80+34G>C
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6279
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6500
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5509
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3775
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3877
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

9-139562848-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562848
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562848
    reference: chr 9
allele count: 566
allele frequency: 8.576537260963118e-3
allele num: 65994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.80+34G>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.80+34G>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-161G>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.80+34G>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-161G>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.80+34G>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.80+34G>T
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 1.75e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 2.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 20083
  bin: 7.5e0
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19466
  bin: 1.25e1
  variant carriers: 254
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21816
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5509
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 6.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3775
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 4.25e1
  variant carriers: 1
num of homozygotes: 5
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

9-139562856-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562856
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562856
    reference: chr 9
allele count: 4
allele frequency: 6.246096189881324e-5
allele num: 64040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.80+42C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.80+42C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-153C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.80+42C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.80+42C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.80+42C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-153C>T
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18760
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20994
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5527
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4057
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3919
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2284
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

9-139562857-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562857
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562857
    reference: chr 9
allele count: 1
allele frequency: 1.547316952404531e-5
allele num: 64628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.80+43G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.80+43G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.80+43G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-152G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.80+43G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-152G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.80+43G>A
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18761
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8543
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3951
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6712
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3062
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

9-139562859-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562859
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562859
    reference: chr 9
allele count: 1
allele frequency: 1.541212009123975e-5
allele num: 64884
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.80+45G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.80+45G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-150G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.80+45G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-150G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.80+45G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.80+45G>C
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21185
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5528
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4005
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21657
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

9-139562860-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562860
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562860
    reference: chr 9
allele count: 2
allele frequency: 3.093006711824564e-5
allele num: 64662
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.80+46A>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.80+46A>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-149A>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.80+46A>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.80+46A>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.80+46A>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-149A>G
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8374
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21309
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4041
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4029
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2522
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5533
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

9-139562860-AGCCCTCAGCACCTCCTAGAGGCG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562860
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562837
    reference: chr 9
allele count: 5
allele frequency: 7.732516779561412e-5
allele num: 64662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21309
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18462
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8374
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2522
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4041
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5533
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6894
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: AGCCCTCAGCACCTCCTAGAGGCG
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

9-139562959-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562959
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562959
    reference: chr 9
allele count: 1
allele frequency: 8.514841368505305e-6
allele num: 117442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-50T>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-50T>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81-50T>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81-50T>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81-50T>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81-50T>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81-50T>A
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6008
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42317
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

9-139562971-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562971
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562971
    reference: chr 9
allele count: 1
allele frequency: 8.510928031592565e-6
allele num: 117496
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81-38C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81-38C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81-38C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81-38C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-38C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-38C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81-38C>T
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42340
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

9-139562974-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562974
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562974
    reference: chr 9
allele count: 10
allele frequency: 8.508031581813231e-5
allele num: 117536
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-35G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81-35G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81-35G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81-35G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-35G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81-35G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81-35G>C
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4720
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42349
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4724
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

9-139562979-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562979
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562979
    reference: chr 9
allele count: 1
allele frequency: 8.499932000543996e-6
allele num: 117648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81-30C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81-30C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-30C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81-30C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-30C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81-30C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81-30C>T
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5001
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42351
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

9-139562980-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562980
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562980
    reference: chr 9
allele count: 1
allele frequency: 8.497476249553883e-6
allele num: 117682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81-29C>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81-29C>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-29C>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81-29C>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81-29C>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-29C>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81-29C>G
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

9-139562981-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562981
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562981
    reference: chr 9
allele count: 2033
allele frequency: 1.727155333537228e-2
allele num: 117708
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81-28T>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81-28T>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-28T>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81-28T>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-28T>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81-28T>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81-28T>A
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 9.75e1
  variant carriers: 164
genotype depth: GenotypeDepth
  all individuals: 6129
  bin: 4.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 2.25e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 5.75e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 2.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 4.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 7.75e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 1.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 6.25e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 3.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 6.75e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 7.25e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 5.25e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 8.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 3.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5198
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 3
num of homozygotes: 31
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

9-139562985-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562985
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562986
    reference: chr 9
allele count: 1
allele frequency: 8.496754239880366e-6
allele num: 117692
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81-23dupT
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81-23dupT
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-23dupT
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-23dupT
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81-23dupT
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81-23dupT
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81-23dupT
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

9-139562985-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562985
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562985
    reference: chr 9
allele count: 1
allele frequency: 8.496754239880366e-6
allele num: 117692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81-24C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81-24C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-24C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81-24C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81-24C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-24C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81-24C>T
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

9-139562987-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562987
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562987
    reference: chr 9
allele count: 2
allele frequency: 1.698081168279844e-5
allele num: 117780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81-22G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81-22G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81-22G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81-22G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-22G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-22G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81-22G>C
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5729
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

9-139562989-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562989
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562989
    reference: chr 9
allele count: 1
allele frequency: 8.487811502682149e-6
allele num: 117816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81-20C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81-20C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-20C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81-20C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-20C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81-20C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81-20C>T
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5759
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

9-139562993-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562993
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562993
    reference: chr 9
allele count: 14059
allele frequency: 1.189303962372686e-1
allele num: 118212
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81-16C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81-16C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81-16C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81-16C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-16C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81-16C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-16C>T
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 4.75e1
  variant carriers: 447
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 1.25e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 4.25e1
  variant carriers: 330
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 8.25e1
  variant carriers: 922
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 6.25e1
  variant carriers: 758
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 3.25e1
  variant carriers: 471
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 3.75e1
  variant carriers: 471
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 2.25e1
  variant carriers: 502
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.75e1
  variant carriers: 342
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 7.25e1
  variant carriers: 880
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 8.75e1
  variant carriers: 813
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 2.75e1
  variant carriers: 564
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 7.5e0
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 6.75e1
  variant carriers: 868
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 5.75e1
  variant carriers: 682
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 9.25e1
  variant carriers: 736
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 5.25e1
  variant carriers: 498
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 9.75e1
  variant carriers: 2631
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 7.75e1
  variant carriers: 974
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4841
  bin: 6.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 2.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 6.75e1
  variant carriers: 17
num of homozygotes: 961
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

9-139562993-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139562993
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139562992
    reference: chr 9
allele count: 1
allele frequency: 8.459378066524549e-6
allele num: 118212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81-15delT
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-15delT
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-15delT
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81-15delT
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81-15delT
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81-15delT
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81-15delT
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46454
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: CT
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

9-139563004-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563004
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563004
    reference: chr 9
allele count: 12
allele frequency: 1.013616244889685e-4
allele num: 118388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81-5C>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-5C>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81-5C>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81-5C>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81-5C>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81-5C>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-5C>G
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
hgvs: c.81-5C>G
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-139563004-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563004
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563004
    reference: chr 9
allele count: 1
allele frequency: 8.446802040747373e-6
allele num: 118388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-5C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81-5C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81-5C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81-5C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81-5C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-5C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81-5C>T
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2066
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
hgvs: c.81-5C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-139563005-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563005
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563005
    reference: chr 9
allele count: 14
allele frequency: 1.182592242194891e-4
allele num: 118384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81-4G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-4G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81-4G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-4G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81-4G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81-4G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81-4G>A
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 2.25e1
  variant carriers: 0
hgvs: c.81-4G>A
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

9-139563005-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563005
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563005
    reference: chr 9
allele count: 30
allele frequency: 2.534126233274767e-4
allele num: 118384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271-4G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81-4G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81-4G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81-4G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81-4G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31-4G>C
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81-4G>C
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6660
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 9.25e1
  variant carriers: 0
hgvs: c.81-4G>C
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

9-139563009-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563009
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563009
    reference: chr 9
allele count: 6
allele frequency: 5.062265870203503e-5
allele num: 118524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.81C>T
  hgvsp: ENST00000492862.2:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.81C>T
  hgvsp: ENST00000308874.7:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.81C>T
  hgvsp: ENST00000371698.3:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.31C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.81C>T
  hgvsp: ENST00000406555.3:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.271C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.81C>T
  hgvsp: ENST00000371699.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 3.25e1
  variant carriers: 0
hgvs: c.81C>T
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

9-139563010-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563010
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563010
    reference: chr 9
allele count: 1
allele frequency: 8.436255652291287e-6
allele num: 118536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.32C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.82C>T
  hgvsp: ENSP00000360763.3:p.Arg28Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.82C>T
  hgvsp: ENSP00000307843.7:p.Arg28Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.82C>T
  hgvsp: ENSP00000360764.1:p.Arg28Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.82C>T
  hgvsp: ENSP00000385639.3:p.Arg28Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.272C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.82C>T
  hgvsp: ENSP00000473338.1:p.Arg28Cys
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7132
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg28Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

9-139563011-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563011
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563011
    reference: chr 9
allele count: 3
allele frequency: 2.530022938874646e-5
allele num: 118576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.83G>A
  hgvsp: ENSP00000307843.7:p.Arg28His
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.83G>A
  hgvsp: ENSP00000385639.3:p.Arg28His
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.83G>A
  hgvsp: ENSP00000360763.3:p.Arg28His
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.273G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.83G>A
  hgvsp: ENSP00000473338.1:p.Arg28His
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.83G>A
  hgvsp: ENSP00000360764.1:p.Arg28His
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.33G>A
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43481
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg28His
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

9-139563016-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563016
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563016
    reference: chr 9
allele count: 2
allele frequency: 1.685459540543729e-5
allele num: 118662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.88G>A
  hgvsp: ENSP00000307843.7:p.Val30Met
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.278G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.88G>A
  hgvsp: ENSP00000385639.3:p.Val30Met
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.88G>A
  hgvsp: ENSP00000360763.3:p.Val30Met
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.38G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.88G>A
  hgvsp: ENSP00000360764.1:p.Val30Met
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.88G>A
  hgvsp: ENSP00000473338.1:p.Val30Met
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43482
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7470
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val30Met
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

9-139563024-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563024
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563024
    reference: chr 9
allele count: 1
allele frequency: 8.419209267865562e-6
allele num: 118776
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.286T>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.96T>G
  hgvsp: ENST00000406555.3:c.96T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.96T>G
  hgvsp: ENST00000492862.2:c.96T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.46T>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.96T>G
  hgvsp: ENST00000308874.7:c.96T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.96T>G
  hgvsp: ENST00000371699.1:c.96T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.96T>G
  hgvsp: ENST00000371698.3:c.96T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43482
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala32Ala
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

9-139563025-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563025
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563025
    reference: chr 9
allele count: 1
allele frequency: 8.418925745074929e-6
allele num: 118780
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.97G>A
  hgvsp: ENSP00000360764.1:p.Val33Ile
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.97G>A
  hgvsp: ENSP00000473338.1:p.Val33Ile
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.287G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.97G>A
  hgvsp: ENSP00000385639.3:p.Val33Ile
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.97G>A
  hgvsp: ENSP00000360763.3:p.Val33Ile
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.47G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.97G>A
  hgvsp: ENSP00000307843.7:p.Val33Ile
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val33Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

9-139563028-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563028
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563028
    reference: chr 9
allele count: 1
allele frequency: 8.41779184484326e-6
allele num: 118796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.290C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.100C>T
  hgvsp: ENSP00000307843.7:p.Arg34Trp
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.100C>T
  hgvsp: ENSP00000360763.3:p.Arg34Trp
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.100C>T
  hgvsp: ENSP00000385639.3:p.Arg34Trp
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.100C>T
  hgvsp: ENSP00000360764.1:p.Arg34Trp
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.100C>T
  hgvsp: ENSP00000473338.1:p.Arg34Trp
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.50C>T
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7544
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg34Trp
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

9-139563034-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563034
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563034
    reference: chr 9
allele count: 4
allele frequency: 3.364850768868401e-5
allele num: 118876
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.106C>T
  hgvsp: ENSP00000360764.1:p.His36Tyr
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.296C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.106C>T
  hgvsp: ENSP00000473338.1:p.His36Tyr
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.106C>T
  hgvsp: ENSP00000360763.3:p.His36Tyr
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.106C>T
  hgvsp: ENSP00000385639.3:p.His36Tyr
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.56C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.106C>T
  hgvsp: ENSP00000307843.7:p.His36Tyr
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7760
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His36Tyr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

9-139563036-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563036
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563036
    reference: chr 9
allele count: 1
allele frequency: 8.411277841329655e-6
allele num: 118888
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.298C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.108C>T
  hgvsp: ENST00000371698.3:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.108C>T
  hgvsp: ENST00000492862.2:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.108C>T
  hgvsp: ENST00000406555.3:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.58C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.108C>T
  hgvsp: ENST00000371699.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.108C>T
  hgvsp: ENST00000308874.7:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 6.75e1
  variant carriers: 0
hgvs: p.His36His
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-139563037-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563037
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563037
    reference: chr 9
allele count: 1
allele frequency: 8.409580193756727e-6
allele num: 118912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.109G>A
  hgvsp: ENSP00000385639.3:p.Gly37Arg
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.109G>A
  hgvsp: ENSP00000473338.1:p.Gly37Arg
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.109G>A
  hgvsp: ENSP00000360764.1:p.Gly37Arg
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.59G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.109G>A
  hgvsp: ENSP00000360763.3:p.Gly37Arg
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.299G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.109G>A
  hgvsp: ENSP00000307843.7:p.Gly37Arg
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly37Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

9-139563040-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563040
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563040
    reference: chr 9
allele count: 2
allele frequency: 1.68143527314916e-5
allele num: 118946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.112G>T
  hgvsp: ENSP00000307843.7:p.Asp38Tyr
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.302G>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.112G>T
  hgvsp: ENSP00000473338.1:p.Asp38Tyr
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.112G>T
  hgvsp: ENSP00000360763.3:p.Asp38Tyr
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.112G>T
  hgvsp: ENSP00000360764.1:p.Asp38Tyr
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.112G>T
  hgvsp: ENSP00000385639.3:p.Asp38Tyr
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.62G>T
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8002
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp38Tyr
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-139563040-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563040
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563040
    reference: chr 9
allele count: 1
allele frequency: 8.4071763657458e-6
allele num: 118946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.112G>A
  hgvsp: ENSP00000385639.3:p.Asp38Asn
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.112G>A
  hgvsp: ENSP00000360764.1:p.Asp38Asn
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.112G>A
  hgvsp: ENSP00000473338.1:p.Asp38Asn
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.62G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.302G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.112G>A
  hgvsp: ENSP00000307843.7:p.Asp38Asn
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.112G>A
  hgvsp: ENSP00000360763.3:p.Asp38Asn
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8002
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp38Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

9-139563043-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563043
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563043
    reference: chr 9
allele count: 16
allele frequency: 1.344854251420502e-4
allele num: 118972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.115C>T
  hgvsp: ENSP00000360763.3:p.Pro39Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.65C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.115C>T
  hgvsp: ENSP00000473338.1:p.Pro39Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.115C>T
  hgvsp: ENSP00000307843.7:p.Pro39Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.115C>T
  hgvsp: ENSP00000360764.1:p.Pro39Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.305C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.115C>T
  hgvsp: ENSP00000385639.3:p.Pro39Ser
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 8039
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro39Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP

9-139563048-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563048
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563048
    reference: chr 9
allele count: 1
allele frequency: 8.40223163272165e-6
allele num: 119016
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.70C>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.120C>G
  hgvsp: ENST00000371699.1:c.120C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.310C>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.120C>G
  hgvsp: ENST00000492862.2:c.120C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.120C>G
  hgvsp: ENST00000308874.7:c.120C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.120C>G
  hgvsp: ENST00000406555.3:c.120C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.120C>G
  hgvsp: ENST00000371698.3:c.120C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4994
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val40Val
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-139563052-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563052
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563052
    reference: chr 9
allele count: 5
allele frequency: 4.200198249357369e-5
allele num: 119042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.124G>A
  hgvsp: ENSP00000307843.7:p.Glu42Lys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.74G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.124G>A
  hgvsp: ENSP00000360764.1:p.Glu42Lys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.124G>A
  hgvsp: ENSP00000360763.3:p.Glu42Lys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.124G>A
  hgvsp: ENSP00000385639.3:p.Glu42Lys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.124G>A
  hgvsp: ENSP00000473338.1:p.Glu42Lys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.314G>A
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu42Lys
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

9-139563056-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563056
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563056
    reference: chr 9
allele count: 1
allele frequency: 8.399126490844953e-6
allele num: 119060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.128C>T
  hgvsp: ENSP00000385639.3:p.Ser43Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.128C>T
  hgvsp: ENSP00000307843.7:p.Ser43Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.318C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.128C>T
  hgvsp: ENSP00000360764.1:p.Ser43Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.128C>T
  hgvsp: ENSP00000473338.1:p.Ser43Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.128C>T
  hgvsp: ENSP00000360763.3:p.Ser43Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.78C>T
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser43Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

9-139563057-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563057
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563057
    reference: chr 9
allele count: 1
allele frequency: 8.39785686692756e-6
allele num: 119078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.129G>A
  hgvsp: ENST00000406555.3:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.319G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.129G>A
  hgvsp: ENST00000371698.3:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.129G>A
  hgvsp: ENST00000308874.7:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.129G>A
  hgvsp: ENST00000371699.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.129G>A
  hgvsp: ENST00000492862.2:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.79G>A
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser43Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

9-139563060-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563060
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563060
    reference: chr 9
allele count: 1
allele frequency: 8.398844319021702e-6
allele num: 119064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.132C>T
  hgvsp: ENST00000308874.7:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.132C>T
  hgvsp: ENST00000492862.2:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.132C>T
  hgvsp: ENST00000406555.3:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.322C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.132C>T
  hgvsp: ENST00000371699.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.132C>T
  hgvsp: ENST00000371698.3:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.82C>T
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe44Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

9-139563061-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563061
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563061
    reference: chr 9
allele count: 10
allele frequency: 8.398138972403715e-5
allele num: 119074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.83G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.133G>A
  hgvsp: ENSP00000360763.3:p.Val45Met
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.133G>A
  hgvsp: ENSP00000307843.7:p.Val45Met
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.133G>A
  hgvsp: ENSP00000385639.3:p.Val45Met
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.323G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.133G>A
  hgvsp: ENSP00000360764.1:p.Val45Met
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.133G>A
  hgvsp: ENSP00000473338.1:p.Val45Met
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val45Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum

9-139563061-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563061
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563061
    reference: chr 9
allele count: 7
allele frequency: 5.878697280682601e-5
allele num: 119074
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.133G>T
  hgvsp: ENSP00000360764.1:p.Val45Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.83G>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.323G>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.133G>T
  hgvsp: ENSP00000360763.3:p.Val45Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.133G>T
  hgvsp: ENSP00000385639.3:p.Val45Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.133G>T
  hgvsp: ENSP00000307843.7:p.Val45Leu
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.133G>T
  hgvsp: ENSP00000473338.1:p.Val45Leu
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val45Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

9-139563063-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563063
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563063
    reference: chr 9
allele count: 4
allele frequency: 3.358860674459224e-5
allele num: 119088
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.135G>T
  hgvsp: ENST00000492862.2:c.135G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.85G>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.135G>T
  hgvsp: ENST00000406555.3:c.135G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.135G>T
  hgvsp: ENST00000308874.7:c.135G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.325G>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.135G>T
  hgvsp: ENST00000371698.3:c.135G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.135G>T
  hgvsp: ENST00000371699.1:c.135G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8198
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val45Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

9-139563067-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563067
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563067
    reference: chr 9
allele count: 1
allele frequency: 8.396587626788473e-6
allele num: 119096
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.139C>T
  hgvsp: ENSP00000360764.1:p.Arg47Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.329C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.89C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.139C>T
  hgvsp: ENSP00000473338.1:p.Arg47Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.139C>T
  hgvsp: ENSP00000385639.3:p.Arg47Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.139C>T
  hgvsp: ENSP00000360763.3:p.Arg47Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.139C>T
  hgvsp: ENSP00000307843.7:p.Arg47Cys
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg47Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD

9-139563068-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563068
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563068
    reference: chr 9
allele count: 4
allele frequency: 3.359086328518643e-5
allele num: 119080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.330G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.90G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.140G>A
  hgvsp: ENSP00000307843.7:p.Arg47His
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.140G>A
  hgvsp: ENSP00000360763.3:p.Arg47His
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.140G>A
  hgvsp: ENSP00000473338.1:p.Arg47His
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.140G>A
  hgvsp: ENSP00000385639.3:p.Arg47His
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.140G>A
  hgvsp: ENSP00000360764.1:p.Arg47His
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43495
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8162
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg47His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

9-139563072-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563072
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563072
    reference: chr 9
allele count: 2
allele frequency: 1.679684219366759e-5
allele num: 119070
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.144G>A
  hgvsp: ENST00000308874.7:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.144G>A
  hgvsp: ENST00000371698.3:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.144G>A
  hgvsp: ENST00000492862.2:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.144G>A
  hgvsp: ENST00000406555.3:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.144G>A
  hgvsp: ENST00000371699.1:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.94G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.334G>A
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8174
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val48Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

9-139563074-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563074
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563074
    reference: chr 9
allele count: 1
allele frequency: 8.399267583866688e-6
allele num: 119058
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.146A>G
  hgvsp: ENSP00000307843.7:p.Tyr49Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.146A>G
  hgvsp: ENSP00000360763.3:p.Tyr49Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.146A>G
  hgvsp: ENSP00000360764.1:p.Tyr49Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.146A>G
  hgvsp: ENSP00000473338.1:p.Tyr49Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.96A>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.146A>G
  hgvsp: ENSP00000385639.3:p.Tyr49Cys
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.336A>G
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8132
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr49Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

9-139563080-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563080
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563080
    reference: chr 9
allele count: 2
allele frequency: 1.68061577762092e-5
allele num: 119004
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.152C>G
  hgvsp: ENSP00000385639.3:p.Pro51Arg
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.152C>G
  hgvsp: ENSP00000360763.3:p.Pro51Arg
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.152C>G
  hgvsp: ENSP00000473338.1:p.Pro51Arg
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.342C>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.152C>G
  hgvsp: ENSP00000360764.1:p.Pro51Arg
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.102C>G
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.152C>G
  hgvsp: ENSP00000307843.7:p.Pro51Arg
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8028
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro51Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

9-139563090-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563090
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563090
    reference: chr 9
allele count: 1
allele frequency: 8.414816809438059e-6
allele num: 118838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.112C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.162C>T
  hgvsp: ENST00000371698.3:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.352C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.162C>T
  hgvsp: ENST00000371699.1:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.162C>T
  hgvsp: ENST00000406555.3:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.162C>T
  hgvsp: ENST00000492862.2:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.162C>T
  hgvsp: ENST00000308874.7:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43495
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7641
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr54Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

9-139563091-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563091
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563091
    reference: chr 9
allele count: 1
allele frequency: 8.418500496691529e-6
allele num: 118786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.163A>T
  hgvsp: ENSP00000385639.3:p.Thr55Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.163A>T
  hgvsp: ENSP00000360763.3:p.Thr55Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.163A>T
  hgvsp: ENSP00000307843.7:p.Thr55Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.163A>T
  hgvsp: ENSP00000360764.1:p.Thr55Ser
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.113A>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.353A>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.163A>T
  hgvsp: ENSP00000473338.1:p.Thr55Ser
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4748
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43494
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7520
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr55Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/9-139563093-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563093
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563093
    reference: chr 9
allele count: 1
allele frequency: 8.418783990840363e-6
allele num: 118782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.165C>A
  hgvsp: ENST00000492862.2:c.165C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.165C>A
  hgvsp: ENST00000371698.3:c.165C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.165C>A
  hgvsp: ENST00000308874.7:c.165C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.115C>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.165C>A
  hgvsp: ENST00000406555.3:c.165C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.355C>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.165C>A
  hgvsp: ENST00000371699.1:c.165C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43494
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr55Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

9-139563096-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563096
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563096
    reference: chr 9
allele count: 3
allele frequency: 2.528231923141749e-5
allele num: 118660
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.168C>T
  hgvsp: ENST00000371699.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.358C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.168C>T
  hgvsp: ENST00000371698.3:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.168C>T
  hgvsp: ENST00000406555.3:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.118C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.168C>T
  hgvsp: ENST00000308874.7:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.168C>T
  hgvsp: ENST00000492862.2:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7079
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Cys56Cys
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

9-139563097-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563097
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563097
    reference: chr 9
allele count: 3
allele frequency: 2.52853024965022e-5
allele num: 118646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.119G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.169G>A
  hgvsp: ENSP00000473338.1:p.Asp57Asn
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.169G>A
  hgvsp: ENSP00000360763.3:p.Asp57Asn
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.359G>A
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.169G>A
  hgvsp: ENSP00000385639.3:p.Asp57Asn
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.169G>A
  hgvsp: ENSP00000307843.7:p.Asp57Asn
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.169G>A
  hgvsp: ENSP00000360764.1:p.Asp57Asn
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp57Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

9-139563099-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 139563099
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 139563099
    reference: chr 9
allele count: 2
allele frequency: 1.686454398273071e-5
allele num: 118592
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000385639
  ensembl transcript: ENST00000406555
  gene symbol: EGFL7
  hgvsc: ENST00000406555.3:c.171C>T
  hgvsp: ENST00000406555.3:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000492002
  gene symbol: EGFL7
  hgvsc: ENST00000492002.1:n.121C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000307843
  ensembl transcript: ENST00000308874
  gene symbol: EGFL7
  hgvsc: ENST00000308874.7:c.171C>T
  hgvsp: ENST00000308874.7:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360764
  ensembl transcript: ENST00000371699
  gene symbol: EGFL7
  hgvsc: ENST00000371699.1:c.171C>T
  hgvsp: ENST00000371699.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172889
  ensembl transcript: ENST00000490469
  gene symbol: EGFL7
  hgvsc: ENST00000490469.1:n.361C>T
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000360763
  ensembl transcript: ENST00000371698
  gene symbol: EGFL7
  hgvsc: ENST00000371698.3:c.171C>T
  hgvsp: ENST00000371698.3:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172889
  ensembl protein: ENSP00000473338
  ensembl transcript: ENST00000492862
  gene symbol: EGFL7
  hgvsc: ENST00000492862.2:c.171C>T
  hgvsp: ENST00000492862.2:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp57Asp
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.183596820683029e-5
allele num: 45796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.47777e5

FS
type: SiteQuality
SIO_000300: 5.967e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.628e-1

QD
type: SiteQuality
SIO_000300: 7.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3122
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

QD
type: SiteQuality
SIO_000300: 1.125e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 9.41299e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.25e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 23

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 229
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variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 8.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.040399918384003e-4
allele num: 9802
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 2.747252747252747e-3
allele num: 6916
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.589331952356292e-4
allele num: 7724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3122
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

FS
type: SiteQuality
SIO_000300: 5.78e-1

QD
type: SiteQuality
SIO_000300: 1.125e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 9.41299e5

BaseQRankSum
type: SiteQuality
SIO_000300: 6.25e-1

GenotypeQuality
all individuals: 264
bin: 7.25e1
variant carriers: 3

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
all individuals: 59
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variant carriers: 4

GenotypeQuality
all individuals: 484
bin: 1.25e1
variant carriers: 2

Latino
type: Population
allele count: 2
allele frequency: 2.593360995850622e-4
allele num: 7712
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.448855404230658e-4
allele num: 6902
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 5.319148936170213e-3
allele num: 564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 49
allele frequency: 1.076166212773434e-3
allele num: 45532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 94
allele frequency: 2.974683544303797e-2
allele num: 3160
num of homozygotes: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.029e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

FS
type: SiteQuality
SIO_000300: 5.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.38602e5

GenotypeQuality
all individuals: 227
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1146
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GenotypeQuality
all individuals: 600
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7688
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.578781180928323e-4
allele num: 6334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.113e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.862e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

DP
type: SiteQuality
SIO_000300: 9.24029e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-1

GenotypeQuality
all individuals: 25301
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3716
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variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.202837254383646e-5
allele num: 45396
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.300728407908429e-4
allele num: 7688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6334
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

DP
type: SiteQuality
SIO_000300: 9.24029e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

FS
type: SiteQuality
SIO_000300: 2.862e0

QD
type: SiteQuality
SIO_000300: 1.113e1

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7648
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.457725947521866e-4
allele num: 6860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.15789e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.184e0

FS
type: SiteQuality
SIO_000300: 2.568e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.41e-1

QD
type: SiteQuality
SIO_000300: 1.135e1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

GenotypeQuality
all individuals: 15710
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 794
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GenotypeQuality
all individuals: 206
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3130
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.36173306193661e-4
allele num: 6878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.907267517582704e-4
allele num: 7678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9446
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.91e-1

DP
type: SiteQuality
SIO_000300: 9.11847e5

MQRankSum
type: SiteQuality
SIO_000300: 5.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.49e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 240
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variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.216705089554886e-5
allele num: 45112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7678
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

MQRankSum
type: SiteQuality
SIO_000300: 5.85e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

FS
type: SiteQuality
SIO_000300: 6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

DP
type: SiteQuality
SIO_000300: 9.11847e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.91e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.49e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 620
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4122
bin: 2.75e1
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GenotypeQuality
all individuals: 4098
bin: 3.25e1
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GenotypeQuality
all individuals: 1031
bin: 6.75e1
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GenotypeQuality
all individuals: 930
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1085
bin: 5.75e1
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GenotypeQuality
all individuals: 238
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1995
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.463488662738796e-5
allele num: 44808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.469723691945914e-4
allele num: 6804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.96642e5

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

FS
type: SiteQuality
SIO_000300: 4.804e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.073e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

VQSLOD
type: SiteQuality
SIO_000300: -8.625e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.71e-1

QD
type: SiteQuality
SIO_000300: 6.4e0

GenotypeQuality
all individuals: 600
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4166
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4080
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1962
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14432
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7610
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 1.289490651192779e-3
allele num: 6204
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.093374152635032e-4
allele num: 9146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3168
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.468428781204112e-4
allele num: 6810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.567117399480613e-4
allele num: 44668
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

FS
type: SiteQuality
SIO_000300: 5.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

DP
type: SiteQuality
SIO_000300: 8.91578e5

GenotypeQuality
all individuals: 2037
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4304
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27082
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6800
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.201188641866608e-4
allele num: 9086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e-1

DP
type: SiteQuality
SIO_000300: 8.79948e5

FS
type: SiteQuality
SIO_000300: 4.645e0

VQSLOD
type: SiteQuality
SIO_000300: -2.556e0

MQRankSum
type: SiteQuality
SIO_000300: -6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

QD
type: SiteQuality
SIO_000300: 2.74e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 27549
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11793
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.264287655103704e-5
allele num: 44164
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.99e-1

MQ
type: SiteQuality
SIO_000300: 5.836e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.511e0

DP
type: SiteQuality
SIO_000300: 8.58735e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

GenotypeQuality
all individuals: 1278
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27576
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
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variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.296527650192908e-5
allele num: 43544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.652346331791143e-4
allele num: 6052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6644
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.387e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.44e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.1224e1

VQSLOD
type: SiteQuality
SIO_000300: -1.049e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

DP
type: SiteQuality
SIO_000300: 8.24158e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

GenotypeQuality
all individuals: 25669
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4324
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3042
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.425300737291424e-5
allele num: 41232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.589e0

VQSLOD
type: SiteQuality
SIO_000300: -1.987e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 7.68475e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

QD
type: SiteQuality
SIO_000300: 5.12e0

GenotypeQuality
all individuals: 980
bin: 9.75e1
variant carriers: 59

GenotypeQuality
all individuals: 5616
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5535
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4308
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1977
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 460
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1932
bin: 1.75e1
variant carriers: 1

Latino
type: Population
allele count: 4
allele frequency: 5.733944954128441e-4
allele num: 6976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

African
type: Population
allele count: 54
allele frequency: 8.712487899322363e-3
allele num: 6198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7330
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.77683013503909e-4
allele num: 5628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3046
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

DP
type: SiteQuality
SIO_000300: 7.51257e5

VQSLOD
type: SiteQuality
SIO_000300: 3.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

QD
type: SiteQuality
SIO_000300: 1.101e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.57e-1

GenotypeQuality
all individuals: 5616
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6423
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 149
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variant carriers: 0

GenotypeQuality
all individuals: 5535
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variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.364256480218281e-4
allele num: 7330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6976
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

DP
type: SiteQuality
SIO_000300: 7.51257e5

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

QD
type: SiteQuality
SIO_000300: 1.101e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
all individuals: 2885
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21816
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.912045889101338e-4
allele num: 5230
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.36e0

QD
type: SiteQuality
SIO_000300: 1.382e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.144e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

DP
type: SiteQuality
SIO_000300: 7.29847e5

GenotypeQuality
all individuals: 1081
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3877
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1447
bin: 9.75e1
variant carriers: 535

GenotypeQuality
all individuals: 6279
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 4.75e1
variant carriers: 8

GenotypeQuality
all individuals: 6500
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 24

GenotypeQuality
all individuals: 134
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 323
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2391
bin: 6.25e1
variant carriers: 9

East Asian
type: Population
allele count: 2
allele frequency: 3.824091778202677e-4
allele num: 5230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 57
allele frequency: 1.916610625420309e-2
allele num: 2974
num of homozygotes: 2

Latino
type: Population
allele count: 67
allele frequency: 1.009036144578313e-2
allele num: 6640
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 417
allele frequency: 1.090196078431373e-2
allele num: 38250
num of homozygotes: 2

African
type: Population
allele count: 11
allele frequency: 1.895244658855961e-3
allele num: 5804
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.01295570955107e-4
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 2.183406113537118e-2
allele num: 458
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

DP
type: SiteQuality
SIO_000300: 7.29847e5

FS
type: SiteQuality
SIO_000300: 1.144e0

VQSLOD
type: SiteQuality
SIO_000300: 4.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

QD
type: SiteQuality
SIO_000300: 1.382e1

GenotypeQuality
all individuals: 6448
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 6.333122229259025e-4
allele num: 6316
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.21078e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.64e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.354e1

GenotypeQuality
all individuals: 2732
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6410
bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2970
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.66794728136172e-5
allele num: 37482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.22819e5

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

QD
type: SiteQuality
SIO_000300: 1.419e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.289e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.62e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 564
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6862
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.575795776867318e-4
allele num: 6346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5070
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.944e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.393e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.84e-1

DP
type: SiteQuality
SIO_000300: 7.22623e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.51e-2

QD
type: SiteQuality
SIO_000300: 5.62e0

GenotypeQuality
all individuals: 6164
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37540
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.534817956875221e-4
allele num: 5658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6334
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

MQ
type: SiteQuality
SIO_000300: 5.039e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

DP
type: SiteQuality
SIO_000300: 7.22901e5

QD
type: SiteQuality
SIO_000300: 3.06e0

FS
type: SiteQuality
SIO_000300: 9.115e0

VQSLOD
type: SiteQuality
SIO_000300: -6.577e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.634e0

GenotypeQuality
all individuals: 984
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4029
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21099
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variant carriers: 0

GenotypeQuality
all individuals: 222
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GenotypeQuality
all individuals: 664
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variant carriers: 0

GenotypeQuality
all individuals: 397
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variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 6.315124723713293e-4
allele num: 6334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2998
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37540
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.510117789187557e-4
allele num: 6622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.634e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

FS
type: SiteQuality
SIO_000300: 9.115e0

MQ
type: SiteQuality
SIO_000300: 5.039e1

QD
type: SiteQuality
SIO_000300: 3.06e0

VQSLOD
type: SiteQuality
SIO_000300: -6.577e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

DP
type: SiteQuality
SIO_000300: 7.22901e5

GenotypeQuality
all individuals: 929
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1436
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 320
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GenotypeQuality
all individuals: 1266
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556953353677524e-5
allele num: 64228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.92e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.259e0

DP
type: SiteQuality
SIO_000300: 2.864864e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.323e0

QD
type: SiteQuality
SIO_000300: 1.01e1

GenotypeQuality
all individuals: 154
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
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GenotypeQuality
all individuals: 1750
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4092
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variant carriers: 0

GenotypeQuality
all individuals: 1002
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variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.302785831337451e-5
allele num: 15866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.874867e6

QD
type: SiteQuality
SIO_000300: 1.019e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.282e0

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

GenotypeQuality
all individuals: 132
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1261
bin: 8.25e1
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GenotypeQuality
all individuals: 1004
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.692628650904033e-5
allele num: 11504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.401039882935334e-4
allele num: 64238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.397e1

DP
type: SiteQuality
SIO_000300: 2.878534e6

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 1.402e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

GenotypeQuality
all individuals: 1419
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1316
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.006846556584777e-4
allele num: 9932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15952
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.162e0

DP
type: SiteQuality
SIO_000300: 2.883442e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.41e1

VQSLOD
type: SiteQuality
SIO_000300: 7.52e-1

FS
type: SiteQuality
SIO_000300: 2.06e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.24e-1

GenotypeQuality
all individuals: 5162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 42351
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variant carriers: 1

GenotypeQuality
all individuals: 1461
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17096018735363e-4
allele num: 8540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9934
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15958
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.311e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 2.884606e6

VQSLOD
type: SiteQuality
SIO_000300: -2.259e-1

QD
type: SiteQuality
SIO_000300: 2.148e1

GenotypeQuality
all individuals: 542
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 903
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1227
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 482
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1403
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 42980
bin: 9.75e1
variant carriers: 1988

South Asian
type: Population
allele count: 273
allele frequency: 1.709669338677355e-2
allele num: 15968
num of homozygotes: 3

Other
type: Population
allele count: 10
allele frequency: 1.146788990825688e-2
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1606
allele frequency: 2.497123487887552e-2
allele num: 64314
num of homozygotes: 27

African
type: Population
allele count: 42
allele frequency: 4.227053140096618e-3
allele num: 9936
num of homozygotes: 0

Latino
type: Population
allele count: 82
allele frequency: 7.129194922622152e-3
allele num: 11502
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 20
allele frequency: 3.041362530413625e-3
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

FS
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 4.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

QD
type: SiteQuality
SIO_000300: 1.305e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.43e-1

DP
type: SiteQuality
SIO_000300: 2.916227e6

GenotypeQuality
all individuals: 42548
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5263
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.007252215954875e-4
allele num: 9928
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 4.545e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

DP
type: SiteQuality
SIO_000300: 2.91897e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

QD
type: SiteQuality
SIO_000300: 1.598e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

GenotypeQuality
all individuals: 1002
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42548
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1263
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5263
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555355087566491e-5
allele num: 64294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

QD
type: SiteQuality
SIO_000300: 1.598e1

FS
type: SiteQuality
SIO_000300: 4.545e0

DP
type: SiteQuality
SIO_000300: 2.91897e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

GenotypeQuality
all individuals: 239
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42551
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.738828029907842e-4
allele num: 11502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64330
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.533e0

DP
type: SiteQuality
SIO_000300: 2.921792e6

QD
type: SiteQuality
SIO_000300: 2.079e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.0e-3

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: -1.679e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.144e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-1

GenotypeQuality
all individuals: 1946
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42552
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1432
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-1

DP
type: SiteQuality
SIO_000300: 2.924071e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.12e0

FS
type: SiteQuality
SIO_000300: 8.139999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 6.8e-1

QD
type: SiteQuality
SIO_000300: 1.3e1

GenotypeQuality
all individuals: 385
bin: 3.25e1
variant carriers: 11

GenotypeQuality
all individuals: 172
bin: 4.75e1
variant carriers: 19

GenotypeQuality
all individuals: 700
bin: 8.75e1
variant carriers: 22

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 19

GenotypeQuality
all individuals: 960
bin: 8.25e1
variant carriers: 37

GenotypeQuality
all individuals: 402
bin: 7.5e0
variant carriers: 8

GenotypeQuality
all individuals: 46454
bin: 9.75e1
variant carriers: 12889

GenotypeQuality
all individuals: 807
bin: 7.25e1
variant carriers: 16

GenotypeQuality
all individuals: 980
bin: 7.75e1
variant carriers: 31

GenotypeQuality
all individuals: 1069
bin: 9.25e1
variant carriers: 37

Other
type: Population
allele count: 102
allele frequency: 1.172413793103448e-1
allele num: 870
num of homozygotes: 10

Latino
type: Population
allele count: 1253
allele frequency: 1.088807785888078e-1
allele num: 11508
num of homozygotes: 77

European (Non-Finnish)
type: Population
allele count: 8133
allele frequency: 1.260734769803131e-1
allele num: 64510
num of homozygotes: 497

East Asian
type: Population
allele count: 45
allele frequency: 5.270555165144062e-3
allele num: 8538
num of homozygotes: 0

African
type: Population
allele count: 1094
allele frequency: 1.09707180104292e-1
allele num: 9972
num of homozygotes: 61

European (Finnish)
type: Population
allele count: 628
allele frequency: 9.546974764366069e-2
allele num: 6578
num of homozygotes: 29

South Asian
type: Population
allele count: 2804
allele frequency: 1.727026361172703e-1
allele num: 16236
num of homozygotes: 287

BaseQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

DP
type: SiteQuality
SIO_000300: 3.241024e6

VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

QD
type: SiteQuality
SIO_000300: 1.533e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.16e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 1.372e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

GenotypeQuality
all individuals: 1525
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4841
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.159152500615915e-5
allele num: 16236
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.241024e6

VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.533e1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.16e-1

FS
type: SiteQuality
SIO_000300: 1.372e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

GenotypeQuality
all individuals: 276
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6616
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2066
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43478
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 777
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.209237714881056e-4
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.003814495081309e-4
allele num: 9962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.747373640335927e-5
allele num: 64538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.082e0

FS
type: SiteQuality
SIO_000300: 5.018e0

DP
type: SiteQuality
SIO_000300: 3.185816e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 1.197e1

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

GenotypeQuality
all individuals: 319
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6616
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43478
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169864295741694e-4
allele num: 8548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

QD
type: SiteQuality
SIO_000300: 1.197e1

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 3.185816e6

FS
type: SiteQuality
SIO_000300: 5.018e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.082e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43485
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.883408619216213e-4
allele num: 16382
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.736412571627018e-4
allele num: 11518
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.199820205214049e-5
allele num: 64518
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.291e1

FS
type: SiteQuality
SIO_000300: 3.029e0

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 3.187434e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 29
allele frequency: 4.401942926533091e-3
allele num: 6588
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64518
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.146788990825688e-3
allele num: 872
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.029e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ClippingRankSum
type: SiteQuality
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DP
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MQRankSum
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QD
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16424
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.28965132842014e-5
allele num: 64588
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11520
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.929e0

ReadPosRankSum
type: SiteQuality
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FS
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VQSLOD
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QD
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InbreedingCoeff
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SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.23e-1

DP
type: SiteQuality
SIO_000300: 3.190759e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64602
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8550
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African
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allele count: 1
allele frequency: 1.002606777621817e-4
allele num: 9974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1821e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

QD
type: SiteQuality
SIO_000300: 1.148e1

MQRankSum
type: SiteQuality
SIO_000300: 4.25e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.191565e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547700117625209e-5
allele num: 64612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169590643274854e-4
allele num: 8550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.002204850671477e-4
allele num: 9978
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

DP
type: SiteQuality
SIO_000300: 3.192899e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.79e-1

QD
type: SiteQuality
SIO_000300: 1.465e1

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

FS
type: SiteQuality
SIO_000300: 5.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.86e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.093580819798917e-5
allele num: 64650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e0

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.984e1

QD
type: SiteQuality
SIO_000300: 1.272e1

FS
type: SiteQuality
SIO_000300: 1.0624e1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.076e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10006
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545117428924598e-5
allele num: 64720
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.903e0

QD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.989e1

VQSLOD
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ClippingRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
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allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.545117428924598e-5
allele num: 64720
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African
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East Asian
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Latino
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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DP
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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South Asian
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African
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allele frequency: 9.986019572598362e-5
allele num: 10014
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European (Finnish)
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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DP
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ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.175317256924075e-5
allele num: 64774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.86e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -4.669e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64782
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.304e0

VQSLOD
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QD
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MQRankSum
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MQ
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SIO_000300: 5.934e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64798
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African
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allele count: 1
allele frequency: 9.948269001193792e-5
allele num: 10052
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.48e-1

QD
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

DP
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SIO_000300: 3.202856e6

FS
type: SiteQuality
SIO_000300: 2.9711e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.42e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
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European (Finnish)
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allele count: 1
allele frequency: 1.514692517418964e-4
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54273372415921e-5
allele num: 64820
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.99e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

FS
type: SiteQuality
SIO_000300: 5.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.634e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.77e-1

QD
type: SiteQuality
SIO_000300: 1.018e1

MQRankSum
type: SiteQuality
SIO_000300: 7.94e-1

DP
type: SiteQuality
SIO_000300: 3.203614e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54273372415921e-5
allele num: 64820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.018e1

MQRankSum
type: SiteQuality
SIO_000300: 7.94e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 3.203614e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.634e0

VQSLOD
type: SiteQuality
SIO_000300: 4.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 5.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

GenotypeQuality
all individuals: 43495
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 27
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 996
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GenotypeQuality
all individuals: 2188
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.058770069675856e-4
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.850652354955122e-4
allele num: 64842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.592e0

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

QD
type: SiteQuality
SIO_000300: 1.37e1

FS
type: SiteQuality
SIO_000300: 5.56e-1

DP
type: SiteQuality
SIO_000300: 3.204982e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541307028360049e-5
allele num: 64880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
SIO_000300: 3.205434e6

FS
type: SiteQuality
SIO_000300: 6.948e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

QD
type: SiteQuality
SIO_000300: 1.489e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.16370808678501e-5
allele num: 64896
num of homozygotes: 0

African
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allele count: 0
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South Asian
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allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.206462e6

MQ
type: SiteQuality
SIO_000300: 5.935e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10096
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.540832049306625e-5
allele num: 64900
num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8552
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.206728e6

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64910
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South Asian
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allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 884
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.31e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
all individuals: 1146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8127
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43491
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2184
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540737088623197e-5
allele num: 64904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10096
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.206804e6

VQSLOD
type: SiteQuality
SIO_000300: 7.11e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

FS
type: SiteQuality
SIO_000300: 5.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e-1

QD
type: SiteQuality
SIO_000300: 1.436e1

GenotypeQuality
all individuals: 774
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8129
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1189
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43495
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 993
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.735207357279195e-4
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.07841626867971e-4
allele num: 64910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169317118802619e-4
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

DP
type: SiteQuality
SIO_000300: 3.208933e6

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 1.365e1

FS
type: SiteQuality
SIO_000300: 1.863e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

GenotypeQuality
all individuals: 105
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8129
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43495
bin: 9.75e1
variant carriers: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.07841626867971e-4
allele num: 64910
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

FS
type: SiteQuality
SIO_000300: 1.863e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

DP
type: SiteQuality
SIO_000300: 3.208933e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

QD
type: SiteQuality
SIO_000300: 1.365e1

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43494
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64920
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.677268475210477e-4
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.208368e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-2

FS
type: SiteQuality
SIO_000300: 5.238e0

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.008e1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.298e0

GenotypeQuality
all individuals: 773
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43494
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 994
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64930
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.395e0

VQSLOD
type: SiteQuality
SIO_000300: 4.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 3.208297e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.076e1

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2178
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.620502710694924e-5
allele num: 64928
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

DP
type: SiteQuality
SIO_000300: 3.208619e6

FS
type: SiteQuality
SIO_000300: 1.845e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.249e1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.95e-1

GenotypeQuality
all individuals: 785
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2188
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43496
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 773
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64918
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.340276152586005e-4
allele num: 8546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.818e0

VQSLOD
type: SiteQuality
SIO_000300: -7.729e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

DP
type: SiteQuality
SIO_000300: 3.208161e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.444e0

QD
type: SiteQuality
SIO_000300: 1.197e1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 781
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43495
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1070
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64910
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.908838684106223e-5
allele num: 10092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.225e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

DP
type: SiteQuality
SIO_000300: 3.20783e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.47e-1

FS
type: SiteQuality
SIO_000300: 2.277e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.221e0

GenotypeQuality
all individuals: 895
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43496
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1178
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.082139004469102e-5
allele num: 64890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.51e0

VQSLOD
type: SiteQuality
SIO_000300: 7.81e-1

FS
type: SiteQuality
SIO_000300: 1.929e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

DP
type: SiteQuality
SIO_000300: 3.206007e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

QD
type: SiteQuality
SIO_000300: 1.015e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.972078181092939e-5
allele num: 10028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.83e-1

FS
type: SiteQuality
SIO_000300: 1.345e0

QD
type: SiteQuality
SIO_000300: 1.103e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 3.201422e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2117
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172607879924953e-4
allele num: 8528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.9e-1

FS
type: SiteQuality
SIO_000300: 4.698e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

DP
type: SiteQuality
SIO_000300: 3.200906e6

MQRankSum
type: SiteQuality
SIO_000300: 2.39e0

QD
type: SiteQuality
SIO_000300: 8.449999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.036e0

GenotypeQuality
all individuals: 1147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.136363636363636e-3
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.889999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

DP
type: SiteQuality
SIO_000300: 3.199193e6

FS
type: SiteQuality
SIO_000300: 8.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.83e-1

GenotypeQuality
all individuals: 2090
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43494
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1067
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.637501932292472e-5
allele num: 64690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.94e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

MQ
type: SiteQuality
SIO_000300: 5.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

DP
type: SiteQuality
SIO_000300: 3.196709e6

VQSLOD
type: SiteQuality
SIO_000300: 3.07e0

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43495
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.638362348866693e-5
allele num: 64678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: -1.175e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.35e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 3.196645e6

QD
type: SiteQuality
SIO_000300: 1.439e1