http://identifiers.org/exac.variant/4-156634468-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634468
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634468
    reference: chr 4
allele count: 7
allele frequency: 5.771006463527239e-5
allele num: 121296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3843C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1305C>A
  hgvsp: ENST00000455639.2:c.1305C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1305C>A
  hgvsp: ENST00000511507.1:c.1305C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3843C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.531C>A
  hgvsp: ENST00000393832.3:c.531C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1305C>A
  hgvsp: ENST00000296518.7:c.1305C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1305C>A
  hgvsp: ENST00000511108.1:c.1305C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*748C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1305C>A
  hgvsp: ENST00000506455.1:c.1305C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1305C>A
  hgvsp: ENST00000513574.1:c.1305C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20498
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr435Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS

4-156634468-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634468
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634468
    reference: chr 4
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*748C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1305C>T
  hgvsp: ENST00000513574.1:c.1305C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.531C>T
  hgvsp: ENST00000393832.3:c.531C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3843C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1305C>T
  hgvsp: ENST00000511108.1:c.1305C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1305C>T
  hgvsp: ENST00000506455.1:c.1305C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3843C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1305C>T
  hgvsp: ENST00000455639.2:c.1305C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1305C>T
  hgvsp: ENST00000511507.1:c.1305C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1305C>T
  hgvsp: ENST00000296518.7:c.1305C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28034
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr435Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

4-156634469-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634469
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634469
    reference: chr 4
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1306C>T
  hgvsp: ENSP00000426968.1:p.Leu436Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1306C>T
  hgvsp: ENSP00000424361.1:p.Leu436Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1306C>T
  hgvsp: ENSP00000296518.7:p.Leu436Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1306C>T
  hgvsp: ENSP00000421493.1:p.Leu436Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3842C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1306C>T
  hgvsp: ENSP00000426040.1:p.Leu436Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.532C>T
  hgvsp: ENSP00000377418.3:p.Leu178Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1306C>T
  hgvsp: ENSP00000412201.2:p.Leu436Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*749C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3842C>T
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu436Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

4-156634494-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634494
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634494
    reference: chr 4
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.557A>T
  hgvsp: ENSP00000377418.3:p.Glu186Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1331A>T
  hgvsp: ENSP00000426040.1:p.Glu444Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1331A>T
  hgvsp: ENSP00000296518.7:p.Glu444Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3817A>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*774A>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1331A>T
  hgvsp: ENSP00000421493.1:p.Glu444Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1331A>T
  hgvsp: ENSP00000424361.1:p.Glu444Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1331A>T
  hgvsp: ENSP00000426968.1:p.Glu444Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3817A>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1331A>T
  hgvsp: ENSP00000412201.2:p.Glu444Val
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu444Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-156634499-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634499
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634499
    reference: chr 4
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1336G>A
  hgvsp: ENSP00000296518.7:p.Glu446Lys
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.562G>A
  hgvsp: ENSP00000377418.3:p.Glu188Lys
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1336G>A
  hgvsp: ENSP00000426040.1:p.Glu446Lys
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*779G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3812G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1336G>A
  hgvsp: ENSP00000421493.1:p.Glu446Lys
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1336G>A
  hgvsp: ENSP00000426968.1:p.Glu446Lys
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1336G>A
  hgvsp: ENSP00000412201.2:p.Glu446Lys
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1336G>A
  hgvsp: ENSP00000424361.1:p.Glu446Lys
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3812G>A
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20502
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu446Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/4-156634505-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634505
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634505
    reference: chr 4
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1342A>C
  hgvsp: ENSP00000412201.2:p.Lys448Gln
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.568A>C
  hgvsp: ENSP00000377418.3:p.Lys190Gln
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1342A>C
  hgvsp: ENSP00000424361.1:p.Lys448Gln
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1342A>C
  hgvsp: ENSP00000426968.1:p.Lys448Gln
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1342A>C
  hgvsp: ENSP00000296518.7:p.Lys448Gln
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1342A>C
  hgvsp: ENSP00000426040.1:p.Lys448Gln
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1342A>C
  hgvsp: ENSP00000421493.1:p.Lys448Gln
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*785A>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3806A>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3806A>C
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys448Gln
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

4-156634516-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634516
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634516
    reference: chr 4
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3795A>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1353A>T
  hgvsp: ENST00000296518.7:c.1353A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1353A>T
  hgvsp: ENST00000513574.1:c.1353A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1353A>T
  hgvsp: ENST00000511108.1:c.1353A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3795A>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.579A>T
  hgvsp: ENST00000393832.3:c.579A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1353A>T
  hgvsp: ENST00000455639.2:c.1353A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1353A>T
  hgvsp: ENST00000506455.1:c.1353A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1353A>T
  hgvsp: ENST00000511507.1:c.1353A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*796A>T
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42818
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val451Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

4-156634532-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634532
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634532
    reference: chr 4
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1369A>G
  hgvsp: ENSP00000421493.1:p.Ile457Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1369A>G
  hgvsp: ENSP00000424361.1:p.Ile457Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.595A>G
  hgvsp: ENSP00000377418.3:p.Ile199Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1369A>G
  hgvsp: ENSP00000426968.1:p.Ile457Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3779A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3779A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1369A>G
  hgvsp: ENSP00000296518.7:p.Ile457Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*812A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1369A>G
  hgvsp: ENSP00000426040.1:p.Ile457Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1369A>G
  hgvsp: ENSP00000412201.2:p.Ile457Val
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8030
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile457Val
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

4-156634533-TATTTCCCTGTGAGGTTGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634533
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634515
    reference: chr 4
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsp: ENSP00000426968.1:p.Phe458_Ala463del
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsp: ENSP00000377418.3:p.Phe200_Ala205del
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsp: ENSP00000426040.1:p.Phe458_Ala463del
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsp: ENSP00000424361.1:p.Phe458_Ala463del
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsp: ENSP00000296518.7:p.Phe458_Ala463del
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsp: ENSP00000421493.1:p.Phe458_Ala463del
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsp: ENSP00000412201.2:p.Phe458_Ala463del
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe458_Ala463del
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: TATTTCCCTGTGAGGTTGC
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS

4-156634539-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634539
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634539
    reference: chr 4
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.602C>T
  hgvsp: ENSP00000377418.3:p.Pro201Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1376C>T
  hgvsp: ENSP00000296518.7:p.Pro459Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3772C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3772C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*819C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1376C>T
  hgvsp: ENSP00000426968.1:p.Pro459Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1376C>T
  hgvsp: ENSP00000426040.1:p.Pro459Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1376C>T
  hgvsp: ENSP00000421493.1:p.Pro459Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1376C>T
  hgvsp: ENSP00000412201.2:p.Pro459Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1376C>T
  hgvsp: ENSP00000424361.1:p.Pro459Leu
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro459Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ

4-156634540-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634540
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634540
    reference: chr 4
allele count: 4
allele frequency: 3.297065611605671e-5
allele num: 121320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1377C>T
  hgvsp: ENST00000506455.1:c.1377C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*820C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1377C>T
  hgvsp: ENST00000455639.2:c.1377C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1377C>T
  hgvsp: ENST00000513574.1:c.1377C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1377C>T
  hgvsp: ENST00000511507.1:c.1377C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1377C>T
  hgvsp: ENST00000296518.7:c.1377C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1377C>T
  hgvsp: ENST00000511108.1:c.1377C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3771C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3771C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.603C>T
  hgvsp: ENST00000393832.3:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28099
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro459Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

4-156634546-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634546
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634546
    reference: chr 4
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1383G>A
  hgvsp: ENST00000296518.7:c.1383G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1383G>A
  hgvsp: ENST00000455639.2:c.1383G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.609G>A
  hgvsp: ENST00000393832.3:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1383G>A
  hgvsp: ENST00000513574.1:c.1383G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1383G>A
  hgvsp: ENST00000506455.1:c.1383G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*826G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1383G>A
  hgvsp: ENST00000511507.1:c.1383G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1383G>A
  hgvsp: ENST00000511108.1:c.1383G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3765G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3765G>A
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu461Glu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum

4-156634547-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634547
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634547
    reference: chr 4
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.610G>T
  hgvsp: ENSP00000377418.3:p.Val204Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1384G>T
  hgvsp: ENSP00000421493.1:p.Val462Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1384G>T
  hgvsp: ENSP00000424361.1:p.Val462Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1384G>T
  hgvsp: ENSP00000426040.1:p.Val462Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3764G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1384G>T
  hgvsp: ENSP00000426968.1:p.Val462Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1384G>T
  hgvsp: ENSP00000412201.2:p.Val462Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3764G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1384G>T
  hgvsp: ENSP00000296518.7:p.Val462Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*827G>T
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val462Phe
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

4-156634548-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634548
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634548
    reference: chr 4
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1385T>C
  hgvsp: ENSP00000426040.1:p.Val462Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1385T>C
  hgvsp: ENSP00000421493.1:p.Val462Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*828T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3763T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1385T>C
  hgvsp: ENSP00000412201.2:p.Val462Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.611T>C
  hgvsp: ENSP00000377418.3:p.Val204Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1385T>C
  hgvsp: ENSP00000296518.7:p.Val462Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1385T>C
  hgvsp: ENSP00000424361.1:p.Val462Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3763T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1385T>C
  hgvsp: ENSP00000426968.1:p.Val462Ala
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7639
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val462Ala
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum

4-156634566-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634566
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634566
    reference: chr 4
allele count: 6
allele frequency: 4.945761482409575e-5
allele num: 121316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1403A>G
  hgvsp: ENSP00000421493.1:p.Gln468Arg
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1403A>G
  hgvsp: ENSP00000296518.7:p.Gln468Arg
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1403A>G
  hgvsp: ENSP00000426040.1:p.Gln468Arg
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1403A>G
  hgvsp: ENSP00000424361.1:p.Gln468Arg
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*846A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3745A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1403A>G
  hgvsp: ENSP00000412201.2:p.Gln468Arg
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1403A>G
  hgvsp: ENSP00000426968.1:p.Gln468Arg
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.629A>G
  hgvsp: ENSP00000377418.3:p.Gln210Arg
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3745A>G
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln468Arg
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

4-156634566-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634566
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634566
    reference: chr 4
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1403A>T
  hgvsp: ENSP00000421493.1:p.Gln468Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1403A>T
  hgvsp: ENSP00000426968.1:p.Gln468Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1403A>T
  hgvsp: ENSP00000412201.2:p.Gln468Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1403A>T
  hgvsp: ENSP00000296518.7:p.Gln468Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1403A>T
  hgvsp: ENSP00000426040.1:p.Gln468Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3745A>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.629A>T
  hgvsp: ENSP00000377418.3:p.Gln210Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*846A>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3745A>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1403A>T
  hgvsp: ENSP00000424361.1:p.Gln468Leu
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln468Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum

4-156634570-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634570
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634570
    reference: chr 4
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1407G>T
  hgvsp: ENST00000506455.1:c.1407G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3741G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1407G>T
  hgvsp: ENST00000511108.1:c.1407G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1407G>T
  hgvsp: ENST00000455639.2:c.1407G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.633G>T
  hgvsp: ENST00000393832.3:c.633G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1407G>T
  hgvsp: ENST00000296518.7:c.1407G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*850G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3741G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1407G>T
  hgvsp: ENST00000513574.1:c.1407G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1407G>T
  hgvsp: ENST00000511507.1:c.1407G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly469Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

4-156634575-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634575
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634575
    reference: chr 4
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1412T>C
  hgvsp: ENSP00000296518.7:p.Val471Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1412T>C
  hgvsp: ENSP00000426968.1:p.Val471Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1412T>C
  hgvsp: ENSP00000412201.2:p.Val471Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.638T>C
  hgvsp: ENSP00000377418.3:p.Val213Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1412T>C
  hgvsp: ENSP00000424361.1:p.Val471Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1412T>C
  hgvsp: ENSP00000426040.1:p.Val471Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1412T>C
  hgvsp: ENSP00000421493.1:p.Val471Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*855T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3736T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3736T>C
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val471Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

4-156634579-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634579
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634579
    reference: chr 4
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1416G>T
  hgvsp: ENST00000513574.1:c.1416G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*859G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1416G>T
  hgvsp: ENST00000506455.1:c.1416G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3732G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1416G>T
  hgvsp: ENST00000511108.1:c.1416G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1416G>T
  hgvsp: ENST00000455639.2:c.1416G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1416G>T
  hgvsp: ENST00000511507.1:c.1416G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1416G>T
  hgvsp: ENST00000296518.7:c.1416G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.642G>T
  hgvsp: ENST00000393832.3:c.642G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3732G>T
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val472Val
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

4-156634591-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634591
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634591
    reference: chr 4
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1428G>A
  hgvsp: ENST00000296518.7:c.1428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3720G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1428G>A
  hgvsp: ENST00000455639.2:c.1428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1428G>A
  hgvsp: ENST00000511507.1:c.1428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1428G>A
  hgvsp: ENST00000511108.1:c.1428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.654G>A
  hgvsp: ENST00000393832.3:c.654G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1428G>A
  hgvsp: ENST00000506455.1:c.1428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1428G>A
  hgvsp: ENST00000513574.1:c.1428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3720G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*871G>A
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys476Lys
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

4-156634600-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634600
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634600
    reference: chr 4
allele count: 439
allele frequency: 3.618648817963006e-3
allele num: 121316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*880T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3711T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1437T>C
  hgvsp: ENST00000296518.7:c.1437T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1437T>C
  hgvsp: ENST00000506455.1:c.1437T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1437T>C
  hgvsp: ENST00000511108.1:c.1437T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1437T>C
  hgvsp: ENST00000455639.2:c.1437T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.663T>C
  hgvsp: ENST00000393832.3:c.663T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1437T>C
  hgvsp: ENST00000513574.1:c.1437T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1437T>C
  hgvsp: ENST00000511507.1:c.1437T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3711T>C
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 7943
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 20458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 28079
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn479Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

4-156634605-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634605
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634605
    reference: chr 4
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1442C>T
  hgvsp: ENSP00000426040.1:p.Thr481Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1442C>T
  hgvsp: ENSP00000412201.2:p.Thr481Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1442C>T
  hgvsp: ENSP00000296518.7:p.Thr481Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1442C>T
  hgvsp: ENSP00000421493.1:p.Thr481Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*885C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3706C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.668C>T
  hgvsp: ENSP00000377418.3:p.Thr223Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1442C>T
  hgvsp: ENSP00000424361.1:p.Thr481Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1442C>T
  hgvsp: ENSP00000426968.1:p.Thr481Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3706C>T
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr481Ile
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/4-156634606-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634606
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634606
    reference: chr 4
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3705C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1443C>A
  hgvsp: ENST00000513574.1:c.1443C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*886C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.669C>A
  hgvsp: ENST00000393832.3:c.669C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3705C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1443C>A
  hgvsp: ENST00000455639.2:c.1443C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1443C>A
  hgvsp: ENST00000511507.1:c.1443C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1443C>A
  hgvsp: ENST00000511108.1:c.1443C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1443C>A
  hgvsp: ENST00000506455.1:c.1443C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1443C>A
  hgvsp: ENST00000296518.7:c.1443C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr481Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

4-156634609-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634609
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634609
    reference: chr 4
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1446G>C
  hgvsp: ENSP00000426968.1:p.Met482Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*889G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1446G>C
  hgvsp: ENSP00000296518.7:p.Met482Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3702G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1446G>C
  hgvsp: ENSP00000424361.1:p.Met482Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.672G>C
  hgvsp: ENSP00000377418.3:p.Met224Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1446G>C
  hgvsp: ENSP00000426040.1:p.Met482Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1446G>C
  hgvsp: ENSP00000421493.1:p.Met482Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3702G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1446G>C
  hgvsp: ENSP00000412201.2:p.Met482Ile
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met482Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

4-156634622-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634622
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634622
    reference: chr 4
allele count: 2
allele frequency: 1.649130908011478e-5
allele num: 121276
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3689A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1459A>G
  hgvsp: ENSP00000426040.1:p.Ile487Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*902A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3689A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1459A>G
  hgvsp: ENSP00000412201.2:p.Ile487Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1459A>G
  hgvsp: ENSP00000426968.1:p.Ile487Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1459A>G
  hgvsp: ENSP00000421493.1:p.Ile487Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1459A>G
  hgvsp: ENSP00000424361.1:p.Ile487Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.685A>G
  hgvsp: ENSP00000377418.3:p.Ile229Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1459A>G
  hgvsp: ENSP00000296518.7:p.Ile487Val
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile487Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

4-156634624-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634624
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634624
    reference: chr 4
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1461C>T
  hgvsp: ENST00000455639.2:c.1461C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.687C>T
  hgvsp: ENST00000393832.3:c.687C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1461C>T
  hgvsp: ENST00000511507.1:c.1461C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*904C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3687C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1461C>T
  hgvsp: ENST00000296518.7:c.1461C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1461C>T
  hgvsp: ENST00000513574.1:c.1461C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1461C>T
  hgvsp: ENST00000511108.1:c.1461C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3687C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1461C>T
  hgvsp: ENST00000506455.1:c.1461C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile487Ile
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

4-156634625-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634625
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634625
    reference: chr 4
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1462G>A
  hgvsp: ENSP00000426968.1:p.Val488Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1462G>A
  hgvsp: ENSP00000424361.1:p.Val488Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1462G>A
  hgvsp: ENSP00000296518.7:p.Val488Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3686G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1462G>A
  hgvsp: ENSP00000421493.1:p.Val488Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.688G>A
  hgvsp: ENSP00000377418.3:p.Val230Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3686G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1462G>A
  hgvsp: ENSP00000412201.2:p.Val488Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*905G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1462G>A
  hgvsp: ENSP00000426040.1:p.Val488Ile
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val488Ile
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

4-156634625-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634625
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634625
    reference: chr 4
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.688G>T
  hgvsp: ENSP00000377418.3:p.Val230Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1462G>T
  hgvsp: ENSP00000421493.1:p.Val488Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3686G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*905G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1462G>T
  hgvsp: ENSP00000296518.7:p.Val488Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1462G>T
  hgvsp: ENSP00000424361.1:p.Val488Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1462G>T
  hgvsp: ENSP00000412201.2:p.Val488Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1462G>T
  hgvsp: ENSP00000426968.1:p.Val488Phe
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3686G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1462G>T
  hgvsp: ENSP00000426040.1:p.Val488Phe
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val488Phe
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

4-156634634-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634634
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634634
    reference: chr 4
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.697A>T
  hgvsp: ENSP00000377418.3:p.Thr233Ser
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1471A>T
  hgvsp: ENSP00000412201.2:p.Thr491Ser
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1471A>T
  hgvsp: ENSP00000426040.1:p.Thr491Ser
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1471A>T
  hgvsp: ENSP00000296518.7:p.Thr491Ser
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*914A>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1471A>T
  hgvsp: ENSP00000421493.1:p.Thr491Ser
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1471A>T
  hgvsp: ENSP00000424361.1:p.Thr491Ser
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1471A>T
  hgvsp: ENSP00000426968.1:p.Thr491Ser
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3677A>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3677A>T
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20498
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr491Ser
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

4-156634651-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634651
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634651
    reference: chr 4
allele count: 3
allele frequency: 2.477209671026556e-5
allele num: 121104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.714G>A
  hgvsp: ENST00000393832.3:c.714G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3660G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1488G>A
  hgvsp: ENST00000511108.1:c.1488G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1488G>A
  hgvsp: ENST00000296518.7:c.1488G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1488G>A
  hgvsp: ENST00000511507.1:c.1488G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1488G>A
  hgvsp: ENST00000455639.2:c.1488G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*931G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3660G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1488G>A
  hgvsp: ENST00000506455.1:c.1488G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1488G>A
  hgvsp: ENST00000513574.1:c.1488G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28193
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln496Gln
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

4-156634651-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634651
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634651
    reference: chr 4
allele count: 1
allele frequency: 8.257365570088519e-6
allele num: 121104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1488G>T
  hgvsp: ENSP00000421493.1:p.Gln496His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3660G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3660G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.714G>T
  hgvsp: ENSP00000377418.3:p.Gln238His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1488G>T
  hgvsp: ENSP00000412201.2:p.Gln496His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1488G>T
  hgvsp: ENSP00000296518.7:p.Gln496His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*931G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1488G>T
  hgvsp: ENSP00000426968.1:p.Gln496His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1488G>T
  hgvsp: ENSP00000424361.1:p.Gln496His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1488G>T
  hgvsp: ENSP00000426040.1:p.Gln496His
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln496His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

4-156634655-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634655
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634655
    reference: chr 4
allele count: 1
allele frequency: 8.258865892535638e-6
allele num: 121082
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1492T>C
  hgvsp: ENSP00000296518.7:p.Ser498Pro
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*935T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1492T>C
  hgvsp: ENSP00000426040.1:p.Ser498Pro
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3656T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1492T>C
  hgvsp: ENSP00000412201.2:p.Ser498Pro
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1492T>C
  hgvsp: ENSP00000424361.1:p.Ser498Pro
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.718T>C
  hgvsp: ENSP00000377418.3:p.Ser240Pro
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1492T>C
  hgvsp: ENSP00000421493.1:p.Ser498Pro
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3656T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1492T>C
  hgvsp: ENSP00000426968.1:p.Ser498Pro
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser498Pro
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/4-156634659-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634659
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634659
    reference: chr 4
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3652C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1496C>A
  hgvsp: ENSP00000426968.1:p.Pro499Gln
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1496C>A
  hgvsp: ENSP00000412201.2:p.Pro499Gln
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1496C>A
  hgvsp: ENSP00000421493.1:p.Pro499Gln
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.722C>A
  hgvsp: ENSP00000377418.3:p.Pro241Gln
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1496C>A
  hgvsp: ENSP00000424361.1:p.Pro499Gln
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1496C>A
  hgvsp: ENSP00000426040.1:p.Pro499Gln
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*939C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3652C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1496C>A
  hgvsp: ENSP00000296518.7:p.Pro499Gln
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7506
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro499Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

4-156634659-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634659
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634659
    reference: chr 4
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1496C>T
  hgvsp: ENSP00000421493.1:p.Pro499Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1496C>T
  hgvsp: ENSP00000426968.1:p.Pro499Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1496C>T
  hgvsp: ENSP00000296518.7:p.Pro499Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1496C>T
  hgvsp: ENSP00000426040.1:p.Pro499Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3652C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.722C>T
  hgvsp: ENSP00000377418.3:p.Pro241Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*939C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1496C>T
  hgvsp: ENSP00000424361.1:p.Pro499Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1496C>T
  hgvsp: ENSP00000412201.2:p.Pro499Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3652C>T
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro499Leu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

4-156634660-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634660
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634660
    reference: chr 4
allele count: 54
allele frequency: 4.461261380347317e-4
allele num: 121042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*940G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1497G>A
  hgvsp: ENST00000511507.1:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3651G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.723G>A
  hgvsp: ENST00000393832.3:c.723G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1497G>A
  hgvsp: ENST00000511108.1:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1497G>A
  hgvsp: ENST00000513574.1:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1497G>A
  hgvsp: ENST00000296518.7:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1497G>A
  hgvsp: ENST00000506455.1:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3651G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1497G>A
  hgvsp: ENST00000455639.2:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20385
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28121
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7927
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro499Pro
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-156634662-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634662
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634662
    reference: chr 4
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1499T>C
  hgvsp: ENSP00000426968.1:p.Leu500Pro
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1499T>C
  hgvsp: ENSP00000424361.1:p.Leu500Pro
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1499T>C
  hgvsp: ENSP00000421493.1:p.Leu500Pro
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1499T>C
  hgvsp: ENSP00000296518.7:p.Leu500Pro
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3649T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1499T>C
  hgvsp: ENSP00000426040.1:p.Leu500Pro
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*942T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.725T>C
  hgvsp: ENSP00000377418.3:p.Leu242Pro
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1499T>C
  hgvsp: ENSP00000412201.2:p.Leu500Pro
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3649T>C
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2716
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu500Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

4-156634681-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634681
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634681
    reference: chr 4
allele count: 1
allele frequency: 8.287201246395068e-6
allele num: 120668
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1518C>T
  hgvsp: ENST00000296518.7:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.744C>T
  hgvsp: ENST00000393832.3:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1518C>T
  hgvsp: ENST00000513574.1:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1518C>T
  hgvsp: ENST00000506455.1:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1518C>T
  hgvsp: ENST00000511507.1:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1518C>T
  hgvsp: ENST00000511108.1:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3630C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1518C>T
  hgvsp: ENST00000455639.2:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*961C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3630C>T
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu506Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

4-156634683-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634683
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634683
    reference: chr 4
allele count: 2
allele frequency: 1.658402295228776e-5
allele num: 120598
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3628A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.746A>G
  hgvsp: ENSP00000377418.3:p.Asn249Ser
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1520A>G
  hgvsp: ENSP00000421493.1:p.Asn507Ser
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1520A>G
  hgvsp: ENSP00000412201.2:p.Asn507Ser
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*963A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1520A>G
  hgvsp: ENSP00000424361.1:p.Asn507Ser
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1520A>G
  hgvsp: ENSP00000426040.1:p.Asn507Ser
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1520A>G
  hgvsp: ENSP00000296518.7:p.Asn507Ser
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3628A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1520A>G
  hgvsp: ENSP00000426968.1:p.Asn507Ser
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn507Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

4-156634697-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634697
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634697
    reference: chr 4
allele count: 3
allele frequency: 2.504759042180142e-5
allele num: 119772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1534C>T
  hgvsp: ENSP00000426040.1:p.Arg512Cys
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1534C>T
  hgvsp: ENSP00000424361.1:p.Arg512Cys
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3614C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1534C>T
  hgvsp: ENSP00000421493.1:p.Arg512Cys
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1534C>T
  hgvsp: ENSP00000296518.7:p.Arg512Cys
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1534C>T
  hgvsp: ENSP00000412201.2:p.Arg512Cys
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*977C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.760C>T
  hgvsp: ENSP00000377418.3:p.Arg254Cys
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1534C>T
  hgvsp: ENSP00000426968.1:p.Arg512Cys
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3614C>T
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7556
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg512Cys
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-156634698-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634698
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634698
    reference: chr 4
allele count: 6
allele frequency: 5.013871711735802e-5
allele num: 119668
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1535G>A
  hgvsp: ENSP00000424361.1:p.Arg512His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1535G>A
  hgvsp: ENSP00000412201.2:p.Arg512His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*978G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1535G>A
  hgvsp: ENSP00000421493.1:p.Arg512His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.761G>A
  hgvsp: ENSP00000377418.3:p.Arg254His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3613G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1535G>A
  hgvsp: ENSP00000426040.1:p.Arg512His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1535G>A
  hgvsp: ENSP00000426968.1:p.Arg512His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3613G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1535G>A
  hgvsp: ENSP00000296518.7:p.Arg512His
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26977
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7487
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg512His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

4-156634698-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634698
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634698
    reference: chr 4
allele count: 10
allele frequency: 8.356452852893004e-5
allele num: 119668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*978G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1535G>T
  hgvsp: ENSP00000296518.7:p.Arg512Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1535G>T
  hgvsp: ENSP00000426968.1:p.Arg512Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3613G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.761G>T
  hgvsp: ENSP00000377418.3:p.Arg254Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3613G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1535G>T
  hgvsp: ENSP00000421493.1:p.Arg512Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1535G>T
  hgvsp: ENSP00000424361.1:p.Arg512Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1535G>T
  hgvsp: ENSP00000412201.2:p.Arg512Leu
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1535G>T
  hgvsp: ENSP00000426040.1:p.Arg512Leu
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26977
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19942
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg512Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

4-156634702-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634702
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634702
    reference: chr 4
allele count: 4
allele frequency: 3.34520882466088e-5
allele num: 119574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1539C>T
  hgvsp: ENST00000455639.2:c.1539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1539C>T
  hgvsp: ENST00000513574.1:c.1539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1539C>T
  hgvsp: ENST00000511108.1:c.1539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.765C>T
  hgvsp: ENST00000393832.3:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*982C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3609C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1539C>T
  hgvsp: ENST00000506455.1:c.1539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3609C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1539C>T
  hgvsp: ENST00000511507.1:c.1539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1539C>T
  hgvsp: ENST00000296518.7:c.1539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20126
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe513Phe
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

4-156634703-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634703
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634703
    reference: chr 4
allele count: 1
allele frequency: 8.372825158665037e-6
allele num: 119434
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1540G>A
  hgvsp: ENSP00000426040.1:p.Asp514Asn
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1540G>A
  hgvsp: ENSP00000296518.7:p.Asp514Asn
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3608G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1540G>A
  hgvsp: ENSP00000421493.1:p.Asp514Asn
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1540G>A
  hgvsp: ENSP00000426968.1:p.Asp514Asn
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1540G>A
  hgvsp: ENSP00000424361.1:p.Asp514Asn
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.766G>A
  hgvsp: ENSP00000377418.3:p.Asp256Asn
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1540G>A
  hgvsp: ENSP00000412201.2:p.Asp514Asn
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3608G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*983G>A
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp514Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

4-156634711-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634711
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634711
    reference: chr 4
allele count: 1
allele frequency: 8.406469619018796e-6
allele num: 118956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.774G>T
  hgvsp: ENSP00000377418.3:p.Gln258His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3600G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1548G>T
  hgvsp: ENSP00000296518.7:p.Gln516His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3600G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1548G>T
  hgvsp: ENSP00000421493.1:p.Gln516His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1548G>T
  hgvsp: ENSP00000426968.1:p.Gln516His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1548G>T
  hgvsp: ENSP00000424361.1:p.Gln516His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1548G>T
  hgvsp: ENSP00000426040.1:p.Gln516His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1548G>T
  hgvsp: ENSP00000412201.2:p.Gln516His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*991G>T
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20103
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln516His
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

4-156634713-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634713
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634713
    reference: chr 4
allele count: 1
allele frequency: 8.424599831508003e-6
allele num: 118700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3598G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1550G>A
  hgvsp: ENSP00000424361.1:p.Cys517Tyr
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1550G>A
  hgvsp: ENSP00000421493.1:p.Cys517Tyr
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3598G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1550G>A
  hgvsp: ENSP00000426040.1:p.Cys517Tyr
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1550G>A
  hgvsp: ENSP00000426968.1:p.Cys517Tyr
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*993G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1550G>A
  hgvsp: ENSP00000412201.2:p.Cys517Tyr
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.776G>A
  hgvsp: ENSP00000377418.3:p.Cys259Tyr
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1550G>A
  hgvsp: ENSP00000296518.7:p.Cys517Tyr
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26130
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys517Tyr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/4-156634721-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634721
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634721
    reference: chr 4
allele count: 1
allele frequency: 8.466683600033867e-6
allele num: 118110
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1558C>A
  hgvsp: ENSP00000296518.7:p.Leu520Met
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1001C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3590C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1558C>A
  hgvsp: ENSP00000426040.1:p.Leu520Met
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1558C>A
  hgvsp: ENSP00000426968.1:p.Leu520Met
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3590C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.784C>A
  hgvsp: ENSP00000377418.3:p.Leu262Met
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1558C>A
  hgvsp: ENSP00000421493.1:p.Leu520Met
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1558C>A
  hgvsp: ENSP00000424361.1:p.Leu520Met
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1558C>A
  hgvsp: ENSP00000412201.2:p.Leu520Met
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu520Met
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/4-156634725-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634725
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634725
    reference: chr 4
allele count: 3
allele frequency: 2.550022950206552e-5
allele num: 117646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1005A>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3586A>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.788A>C
  hgvsp: ENSP00000377418.3:p.Asp263Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1562A>C
  hgvsp: ENSP00000296518.7:p.Asp521Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1562A>C
  hgvsp: ENSP00000424361.1:p.Asp521Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3586A>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1562A>C
  hgvsp: ENSP00000412201.2:p.Asp521Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1562A>C
  hgvsp: ENSP00000421493.1:p.Asp521Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1562A>C
  hgvsp: ENSP00000426968.1:p.Asp521Ala
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1562A>C
  hgvsp: ENSP00000426040.1:p.Asp521Ala
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19746
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asp521Ala
num of homozygotes: 1
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

4-156634732-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634732
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634732
    reference: chr 4
allele count: 1
allele frequency: 8.577947811765514e-6
allele num: 116578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1569C>T
  hgvsp: ENST00000513574.1:c.1569C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1569C>T
  hgvsp: ENST00000511108.1:c.1569C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3579C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1012C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1569C>T
  hgvsp: ENST00000506455.1:c.1569C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1569C>T
  hgvsp: ENST00000511507.1:c.1569C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.795C>T
  hgvsp: ENST00000393832.3:c.795C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1569C>T
  hgvsp: ENST00000296518.7:c.1569C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1569C>T
  hgvsp: ENST00000455639.2:c.1569C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3579C>T
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr523Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

4-156634747-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634747
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634747
    reference: chr 4
allele count: 2
allele frequency: 1.764508672560126e-5
allele num: 113346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1572+12C>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1572+12C>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3564C>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1572+12C>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.798+12C>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1572+12C>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3564C>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1572+12C>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1015+12C>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1572+12C>G
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21523
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5225
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

4-156634751-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634751
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634751
    reference: chr 4
allele count: 1
allele frequency: 8.878156184523599e-6
allele num: 112636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1572+16G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1015+16G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.798+16G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1572+16G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1572+16G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3560G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1572+16G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1572+16G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1572+16G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3560G>A
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20213
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

4-156634753-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634753
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634753
    reference: chr 4
allele count: 15
allele frequency: 1.333949914627205e-4
allele num: 112448
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1015+18A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3558A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1572+18A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1572+18A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1572+18A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.798+18A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1572+18A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1572+18A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1572+18A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3558A>G
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9868
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15050
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19835
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

4-156634761-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634761
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634761
    reference: chr 4
allele count: 2
allele frequency: 1.798399424512184e-5
allele num: 111210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3550G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1572+26G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1572+26G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1572+26G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1015+26G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.798+26G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1572+26G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3550G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1572+26G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1572+26G>C
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12566
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3173
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-156634762-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634762
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634762
    reference: chr 4
allele count: 1
allele frequency: 9.00009000090001e-6
allele num: 111110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1572+27T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1572+27T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1572+27T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1572+27T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1572+27T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.798+27T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1572+27T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3549T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1015+27T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3549T>C
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16828
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4791
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9185
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

4-156634768-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634768
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634768
    reference: chr 4
allele count: 4
allele frequency: 3.657978966620942e-5
allele num: 109350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3543C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1572+33C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1572+33C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1572+33C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3543C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1572+33C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1572+33C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.798+33C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1015+33C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1572+33C>T
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13379
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13289
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11387
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

4-156634776-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634776
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634776
    reference: chr 4
allele count: 1
allele frequency: 9.265951335223587e-6
allele num: 107922
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1572+41T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1572+41T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1015+41T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1572+41T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1572+41T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3535T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.798+41T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1572+41T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3535T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1572+41T>C
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15311
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13354
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

4-156634782-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634782
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634782
    reference: chr 4
allele count: 1
allele frequency: 9.406275867258635e-6
allele num: 106312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3529G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1572+47G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1572+47G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1572+47G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1015+47G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1572+47G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1572+47G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3529G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1572+47G>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.798+47G>C
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15435
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9554
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

4-156634784-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634784
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634784
    reference: chr 4
allele count: 3
allele frequency: 2.836289377150853e-5
allele num: 105772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3527G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1572+49G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1572+49G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3527G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1572+49G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1572+49G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.798+49G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1572+49G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1572+49G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1015+49G>A
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15371
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12290
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/4-156634787-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156634787
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156634787
    reference: chr 4
allele count: 1
allele frequency: 9.518370454978108e-6
allele num: 105060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-3524C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1015+52C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1572+52C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.798+52C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1572+52C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1572+52C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1572+52C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1572+52C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1572+52C>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-3524C>A
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15309
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5829
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

4-156638281-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156638281
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156638281
    reference: chr 4
allele count: 2
allele frequency: 1.799888406918771e-5
allele num: 111118
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1573-30T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1573-30T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-30T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1016-30T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1573-30T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1573-30T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.799-30T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1573-30T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1573-30T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-30T>C
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39913
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

4-156638282-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156638282
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156638282
    reference: chr 4
allele count: 2
allele frequency: 1.799920803484647e-5
allele num: 111116
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1573-29T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1573-29T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-29T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1573-29T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1573-29T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-29T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1016-29T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1573-29T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.799-29T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1573-29T>C
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

4-156638287-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156638287
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156638287
    reference: chr 4
allele count: 1
allele frequency: 8.993614533681087e-6
allele num: 111190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-24G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1573-24G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1573-24G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1573-24G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-24G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1016-24G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1573-24G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1573-24G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1573-24G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.799-24G>T
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40032
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

4-156638288-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156638288
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156638288
    reference: chr 4
allele count: 4
allele frequency: 3.595440980836299e-5
allele num: 111252
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-23T>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-23T>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1573-23T>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1573-23T>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1573-23T>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.799-23T>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1016-23T>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1573-23T>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1573-23T>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1573-23T>A
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

4-156638289-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156638289
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156638289
    reference: chr 4
allele count: 1
allele frequency: 8.988279283813908e-6
allele num: 111256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1573-22A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-22A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-22A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1573-22A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.799-22A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1573-22A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1573-22A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1573-22A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1573-22A>G
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1016-22A>G
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

4-156638304-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156638304
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156638304
    reference: chr 4
allele count: 1
allele frequency: 8.933995640210128e-6
allele num: 111932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1573-7T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1573-7T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.194-7T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.377-7T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1016-7T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1573-7T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1573-7T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.799-7T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1573-7T>C
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1573-7T>C
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1573-7T>C
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

4-156638313-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156638313
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156638313
    reference: chr 4
allele count: 1
allele frequency: 8.852377748663291e-6
allele num: 112964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1575G>T
  hgvsp: ENST00000513574.1:c.1575G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.196G>T
  hgvsp: ENSP00000424863.1:p.Gly66Ter
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1575G>T
  hgvsp: ENST00000506455.1:c.1575G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1575G>T
  hgvsp: ENST00000455639.2:c.1575G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1018G>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1575G>T
  hgvsp: ENST00000511108.1:c.1575G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.379G>T
  hgvsp: ENSP00000422141.1:p.Gly127Ter
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.801G>T
  hgvsp: ENST00000393832.3:c.801G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1575G>T
  hgvsp: ENST00000296518.7:c.1575G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1575G>T
  hgvsp: ENST00000511507.1:c.1575G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly127Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ

4-156638325-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156638325
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156638325
    reference: chr 4
allele count: 2
allele frequency: 1.747396379394702e-5
allele num: 114456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.813C>T
  hgvsp: ENST00000393832.3:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1587C>T
  hgvsp: ENST00000511108.1:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1587C>T
  hgvsp: ENST00000511507.1:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.208C>T
  hgvsp: ENSP00000424863.1:p.Arg70Ter
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.391C>T
  hgvsp: ENSP00000422141.1:p.Arg131Ter
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1587C>T
  hgvsp: ENST00000506455.1:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1587C>T
  hgvsp: ENST00000296518.7:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1587C>T
  hgvsp: ENST00000455639.2:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1030C>T
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1587C>T
  hgvsp: ENST00000513574.1:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg131Ter
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

4-156638330-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156638330
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156638330
    reference: chr 4
allele count: 1
allele frequency: 8.649321893163576e-6
allele num: 115616
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1592C>T
  hgvsp: ENSP00000296518.7:p.Ala531Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1592C>T
  hgvsp: ENSP00000421493.1:p.Ala531Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1592C>T
  hgvsp: ENSP00000424361.1:p.Ala531Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1592C>T
  hgvsp: ENSP00000426040.1:p.Ala531Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.396C>T
  hgvsp: ENST00000515201.1:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1592C>T
  hgvsp: ENSP00000412201.2:p.Ala531Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.213C>T
  hgvsp: ENST00000509901.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1592C>T
  hgvsp: ENSP00000426968.1:p.Ala531Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.818C>T
  hgvsp: ENSP00000377418.3:p.Ala273Val
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1035C>T
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala531Val
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

4-156638332-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156638332
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156638332
    reference: chr 4
allele count: 1
allele frequency: 8.608667206143144e-6
allele num: 116162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1594T>C
  hgvsp: ENSP00000421493.1:p.Tyr532His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1594T>C
  hgvsp: ENSP00000426040.1:p.Tyr532His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1594T>C
  hgvsp: ENSP00000426968.1:p.Tyr532His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.215T>C
  hgvsp: ENSP00000424863.1:p.Leu72Pro
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.398T>C
  hgvsp: ENSP00000422141.1:p.Leu133Pro
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1594T>C
  hgvsp: ENSP00000412201.2:p.Tyr532His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1594T>C
  hgvsp: ENSP00000424361.1:p.Tyr532His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.820T>C
  hgvsp: ENSP00000377418.3:p.Tyr274His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1594T>C
  hgvsp: ENSP00000296518.7:p.Tyr532His
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1037T>C
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Tyr532His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

4-156638338-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156638338
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 156638338
    reference: chr 4
allele count: 5
allele frequency: 4.273869561500983e-5
allele num: 116990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426040
  ensembl transcript: ENST00000513574
  gene symbol: GUCY1A3
  hgvsc: ENST00000513574.1:c.1600G>A
  hgvsp: ENSP00000426040.1:p.Val534Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000421493
  ensembl transcript: ENST00000511108
  gene symbol: GUCY1A3
  hgvsc: ENST00000511108.1:c.1600G>A
  hgvsp: ENSP00000421493.1:p.Val534Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000412201
  ensembl transcript: ENST00000455639
  gene symbol: GUCY1A3
  hgvsc: ENST00000455639.2:c.1600G>A
  hgvsp: ENSP00000412201.2:p.Val534Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424863
  ensembl transcript: ENST00000509901
  gene symbol: GUCY1A3
  hgvsc: ENST00000509901.1:c.221G>A
  hgvsp: ENSP00000424863.1:p.Cys74Tyr
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000424361
  ensembl transcript: ENST00000506455
  gene symbol: GUCY1A3
  hgvsc: ENST00000506455.1:c.1600G>A
  hgvsp: ENSP00000424361.1:p.Val534Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000409903
  ensembl transcript: ENST00000443668
  gene symbol: GUCY1A3
  hgvsc: ENST00000443668.2:c.*1043G>A
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000422141
  ensembl transcript: ENST00000515201
  gene symbol: GUCY1A3
  hgvsc: ENST00000515201.1:c.404G>A
  hgvsp: ENSP00000422141.1:p.Cys135Tyr
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000377418
  ensembl transcript: ENST00000393832
  gene symbol: GUCY1A3
  hgvsc: ENST00000393832.3:c.826G>A
  hgvsp: ENSP00000377418.3:p.Val276Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000296518
  ensembl transcript: ENST00000296518
  gene symbol: GUCY1A3
  hgvsc: ENST00000296518.7:c.1600G>A
  hgvsp: ENSP00000296518.7:p.Val534Ile
  variant of: http://identifiers.org/hgnc/4685
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164116
  ensembl protein: ENSP00000426968
  ensembl transcript: ENST00000511507
  gene symbol: GUCY1A3
  hgvsc: ENST00000511507.1:c.1600G>A
  hgvsp: ENSP00000426968.1:p.Val534Ile
  variant of: http://identifiers.org/hgnc/4685
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val534Ile
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 7648
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 42719
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.085402786190188e-4
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.942e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.373e1

DP
type: SiteQuality
SIO_000300: 1.639355e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.269e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

FS
type: SiteQuality
SIO_000300: 1.099e0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7648
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42719
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.269e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

FS
type: SiteQuality
SIO_000300: 1.099e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

DP
type: SiteQuality
SIO_000300: 1.639355e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

QD
type: SiteQuality
SIO_000300: 1.373e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7652
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2509
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2771
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42734
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.26e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.639114e6

VQSLOD
type: SiteQuality
SIO_000300: -1.674e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.903e0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42775
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2773
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7652
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.4098e1

VQSLOD
type: SiteQuality
SIO_000300: -1.656e0

DP
type: SiteQuality
SIO_000300: 1.639688e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.109e1

MQRankSum
type: SiteQuality
SIO_000300: -1.175e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.2e-1

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2501
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2769
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42801
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7646
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.036e0

DP
type: SiteQuality
SIO_000300: 1.639764e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.6e-2

QD
type: SiteQuality
SIO_000300: 1.309e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.884e0

VQSLOD
type: SiteQuality
SIO_000300: 6.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2499
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42812
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2771
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 8.957000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0

DP
type: SiteQuality
SIO_000300: 1.639732e6

MQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.072e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.18e-1

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2499
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.73e0

VQSLOD
type: SiteQuality
SIO_000300: -2.365e0

QD
type: SiteQuality
SIO_000300: 1.57e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.639742e6

GenotypeQuality
all individuals: 63
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42826
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7640
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2492
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.639994e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.98e-1

FS
type: SiteQuality
SIO_000300: 7.76e-1

QD
type: SiteQuality
SIO_000300: 1.54e1

GenotypeQuality
all individuals: 2493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2764
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42816
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.639902e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.142e0

MQ
type: SiteQuality
SIO_000300: 4.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.88e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.427e0

VQSLOD
type: SiteQuality
SIO_000300: 7.000000000000001e-2

QD
type: SiteQuality
SIO_000300: 3.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 8.4e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7645
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2488
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42839
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

DP
type: SiteQuality
SIO_000300: 1.639921e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.455e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 1.1313e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.562e0

QD
type: SiteQuality
SIO_000300: 1.004e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-1

MQ
type: SiteQuality
SIO_000300: 5.898e1

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42837
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2488
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2760
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7639
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 9.75e1
variant carriers: 4

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 1.967e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.162e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-2

DP
type: SiteQuality
SIO_000300: 1.640082e6

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2491
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42854
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7637
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.91e0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

QD
type: SiteQuality
SIO_000300: 1.192e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-2

FS
type: SiteQuality
SIO_000300: 9.3e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 1.639847e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.54e-1

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42855
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2494
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7638
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.091e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 5.679999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.332e0

QD
type: SiteQuality
SIO_000300: 1.205e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 1.639917e6

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2764
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42855
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2494
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2073
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.69e0

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 1.639846e6

FS
type: SiteQuality
SIO_000300: 3.184e0

QD
type: SiteQuality
SIO_000300: 1.398e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: -9.81e-1

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2766
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42878
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7634
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.199306759098787e-4
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.4e-1

FS
type: SiteQuality
SIO_000300: 6.999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.6e-2

DP
type: SiteQuality
SIO_000300: 1.639937e6

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.275e1

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7634
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2766
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42878
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

DP
type: SiteQuality
SIO_000300: 1.639937e6

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 6.999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.275e1

MQRankSum
type: SiteQuality
SIO_000300: 8.4e-1

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2068
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42839
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7625
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2491
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.508e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.613e0

QD
type: SiteQuality
SIO_000300: 1.219e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.566e0

FS
type: SiteQuality
SIO_000300: 6.147e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.639777e6

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42882
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7633
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2491
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2766
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

DP
type: SiteQuality
SIO_000300: 1.639772e6

VQSLOD
type: SiteQuality
SIO_000300: 6.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 4.824e0

QD
type: SiteQuality
SIO_000300: 1.352e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.05e-1

GenotypeQuality
all individuals: 2763
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7624
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42875
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2066
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 585
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e0

MQRankSum
type: SiteQuality
SIO_000300: -1.369e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.193e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.68e-1

FS
type: SiteQuality
SIO_000300: 2.3e0

DP
type: SiteQuality
SIO_000300: 1.639724e6

VQSLOD
type: SiteQuality
SIO_000300: -3.398e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 7.5e0

GenotypeQuality
all individuals: 2490
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 585
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2758
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7613
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42904
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.639508e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

QD
type: SiteQuality
SIO_000300: 1.003e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.584e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 8.077999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.172e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

GenotypeQuality
all individuals: 7587
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2722
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2292
bin: 9.75e1
variant carriers: 439

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42851
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2468
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 347
allele frequency: 5.201930860792132e-3
allele num: 66706
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 60
allele frequency: 5.198405822214521e-3
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.360749924402782e-3
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.68787238131847e-4
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.479709267110841e-4
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

DP
type: SiteQuality
SIO_000300: 1.660511e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e-1

QD
type: SiteQuality
SIO_000300: 1.334e1

VQSLOD
type: SiteQuality
SIO_000300: 6.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43113
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7644
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.112e1

VQSLOD
type: SiteQuality
SIO_000300: 4.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

DP
type: SiteQuality
SIO_000300: 1.63474e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.935e0

FS
type: SiteQuality
SIO_000300: 3.115e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e-1

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2745
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7645
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 572
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43119
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2490
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

FS
type: SiteQuality
SIO_000300: 2.38e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.634675e6

VQSLOD
type: SiteQuality
SIO_000300: -2.013e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.59e-1

QD
type: SiteQuality
SIO_000300: 8.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.502e0

GenotypeQuality
all individuals: 2486
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43097
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1876
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 1.335e1

VQSLOD
type: SiteQuality
SIO_000300: -9.303e-1

DP
type: SiteQuality
SIO_000300: 1.63451e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.85e-1

FS
type: SiteQuality
SIO_000300: 5.605e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

MQ
type: SiteQuality
SIO_000300: 5.79e1

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2484
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2739
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1446
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1876
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7629
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999850007499625e-5
allele num: 66670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.633865e6

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.78e-1

FS
type: SiteQuality
SIO_000300: 3.295e0

QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2736
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7623
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43083
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1874
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1446
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.413e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.633758e6

VQSLOD
type: SiteQuality
SIO_000300: -4.679e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.46e-1

FS
type: SiteQuality
SIO_000300: 3.993e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.534e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

QD
type: SiteQuality
SIO_000300: 1.165e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1874
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7628
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2479
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43086
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 5.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.633581e6

QD
type: SiteQuality
SIO_000300: 1.233e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43086
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1874
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 569
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7628
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2479
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 1.233e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 5.03e0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

DP
type: SiteQuality
SIO_000300: 1.633581e6

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7608
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43060
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.077e1

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.89e0

FS
type: SiteQuality
SIO_000300: 4.608e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.84e-1

DP
type: SiteQuality
SIO_000300: 1.632775e6

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2724
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2460
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42911
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 3
allele frequency: 2.887391722810395e-4
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.63037e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.933e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.95e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42911
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2724
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2460
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50195253829979e-5
allele num: 66580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.63037e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.95e0

VQSLOD
type: SiteQuality
SIO_000300: -7.933e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42859
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2723
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2452
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.628345850182938e-5
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.249e0

FS
type: SiteQuality
SIO_000300: 8.89e-1

DP
type: SiteQuality
SIO_000300: 1.629575e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-2

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2714
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42710
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502855425308085e-5
allele num: 66540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.4e1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.332e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.97e-1

DP
type: SiteQuality
SIO_000300: 1.628421e6

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42710
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7506
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2714
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502855425308085e-5
allele num: 66540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 4.332e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

QD
type: SiteQuality
SIO_000300: 1.4e1

DP
type: SiteQuality
SIO_000300: 1.628421e6

VQSLOD
type: SiteQuality
SIO_000300: 9.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.97e-1

GenotypeQuality
all individuals: 315
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42738
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2710
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 9.75e1
variant carriers: 54

GenotypeQuality
all individuals: 7478
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63020030816641e-5
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50271992306074e-5
allele num: 66546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 52
allele frequency: 3.154956922703555e-3
allele num: 16482
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.414e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 1.630339e6

VQSLOD
type: SiteQuality
SIO_000300: 5.02e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.334e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42853
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7497
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2440
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 595
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502765087761481e-5
allele num: 66544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.683e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.097e0

MQRankSum
type: SiteQuality
SIO_000300: -2.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.93e-1

QD
type: SiteQuality
SIO_000300: 1.625e1

DP
type: SiteQuality
SIO_000300: 1.62751e6

GenotypeQuality
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7362
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42540
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2365
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2647
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 2.921e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.167e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.179e0

QD
type: SiteQuality
SIO_000300: 1.414e1

DP
type: SiteQuality
SIO_000300: 1.61922e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e0

VQSLOD
type: SiteQuality
SIO_000300: -2.277e0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2638
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42500
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7350
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1389
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2366
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216841080554879e-4
allele num: 16436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

DP
type: SiteQuality
SIO_000300: 1.617683e6

FS
type: SiteQuality
SIO_000300: 3.551e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.348e1

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

GenotypeQuality
all individuals: 348
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40945
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7024
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2554
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1834
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.554287102258927e-5
allele num: 65872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 1.596971e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.77e-1

FS
type: SiteQuality
SIO_000300: 4.605e0

QD
type: SiteQuality
SIO_000300: 1.465e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.28e-1

GenotypeQuality
all individuals: 6972
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2550
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2263
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40566
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 9.75e1
variant carriers: 6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.372922861640721e-4
allele num: 11434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519295047098146e-5
allele num: 65820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.522e0

MQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

FS
type: SiteQuality
SIO_000300: 1.238e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 1.593808e6

QD
type: SiteQuality
SIO_000300: 1.229e1

GenotypeQuality
all individuals: 2263
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6972
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2550
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40566
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 9.75e1
variant carriers: 10

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.367365542388332e-4
allele num: 65820
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.745845723281441e-5
allele num: 11434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

DP
type: SiteQuality
SIO_000300: 1.593808e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

FS
type: SiteQuality
SIO_000300: 1.238e0

QD
type: SiteQuality
SIO_000300: 1.229e1

MQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.522e0

GenotypeQuality
all individuals: 221
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6935
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 40941
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.497726477789437e-4
allele num: 11436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.383e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.333e1

MQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.3e-1

DP
type: SiteQuality
SIO_000300: 1.589629e6

GenotypeDepth
all individuals: 20
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6902
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40675
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1774
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 331
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522255373561469e-5
allele num: 65692
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.039e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e0

FS
type: SiteQuality
SIO_000300: 3.361e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

QD
type: SiteQuality
SIO_000300: 9.33e0

DP
type: SiteQuality
SIO_000300: 1.586015e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.357e0

VQSLOD
type: SiteQuality
SIO_000300: 3.42e-1

GenotypeQuality
all individuals: 6735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1811
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1311
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40596
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2439
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.19041723412158e-5
allele num: 16154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.3e-2

FS
type: SiteQuality
SIO_000300: 3.925e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

VQSLOD
type: SiteQuality
SIO_000300: 3.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

QD
type: SiteQuality
SIO_000300: 1.15e1

DP
type: SiteQuality
SIO_000300: 1.573134e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.75e-1

GenotypeQuality
all individuals: 473
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40071
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6657
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2417
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530456075910621e-5
allele num: 65340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.861e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.391e0

DP
type: SiteQuality
SIO_000300: 1.567636e6

MQRankSum
type: SiteQuality
SIO_000300: 2.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 9.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.688e0

GenotypeQuality
all individuals: 375
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2927
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6495
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39832
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.012965964343598e-4
allele num: 9872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.418e0

MQRankSum
type: SiteQuality
SIO_000300: 2.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.671e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.208e0

DP
type: SiteQuality
SIO_000300: 1.554208e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.36e0

QD
type: SiteQuality
SIO_000300: 1.147e1

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2256
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3351
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6392
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 632
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39565
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.901863826550019e-4
allele num: 15774
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.91e-1

FS
type: SiteQuality
SIO_000300: 4.359e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-2

DP
type: SiteQuality
SIO_000300: 1.543861e6

VQSLOD
type: SiteQuality
SIO_000300: -1.808e0

QD
type: SiteQuality
SIO_000300: 2.16e1

GenotypeQuality
all individuals: 1791
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 328
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6082
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4432
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2163
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553132668592551e-5
allele num: 64386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.843e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.01e-1

FS
type: SiteQuality
SIO_000300: 2.456e0

QD
type: SiteQuality
SIO_000300: 7.44e0

MQRankSum
type: SiteQuality
SIO_000300: 7.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.721e0

DP
type: SiteQuality
SIO_000300: 1.519383e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 394
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 700
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31769
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1987
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7585
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.173494970010472e-5
allele num: 63022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 8.279999999999999e0

FS
type: SiteQuality
SIO_000300: 2.167e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.541e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.131e0

DP
type: SiteQuality
SIO_000300: 1.419416e6

GenotypeQuality
all individuals: 491
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3024
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8299
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2375
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29594
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4942
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.082251082251082e-4
allele num: 9240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14040
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.92e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 1.385522e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.6e-2

QD
type: SiteQuality
SIO_000300: 7.82e0

GenotypeQuality
all individuals: 2460
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8498
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4873
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29775
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1779
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1795
bin: 9.75e1
variant carriers: 15

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.162297665090961e-5
allele num: 13962
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.803101334294987e-4
allele num: 11092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.596627921829097e-4
allele num: 62632
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.380952380952381e-3
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9194
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.375692e6

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.31e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

GenotypeQuality
all individuals: 301
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3160
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9155
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1705
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1778
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4604
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4405
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1063
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9078
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.217606744103736e-5
allele num: 62158
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.483e1

DP
type: SiteQuality
SIO_000300: 1.312203e6

VQSLOD
type: SiteQuality
SIO_000300: 5.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.077e0

FS
type: SiteQuality
SIO_000300: 1.234e0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 504
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24318
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4361
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3259
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1417
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.609787508048938e-5
allele num: 62120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.303713e6

VQSLOD
type: SiteQuality
SIO_000300: 7.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

FS
type: SiteQuality
SIO_000300: 4.992e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

QD
type: SiteQuality
SIO_000300: 1.083e1

GenotypeQuality
all individuals: 1182
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3728
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8977
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1588
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6116
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5346
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17560
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 433
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8890
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.151095005514417e-4
allele num: 12694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61452
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -7.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.194e0

FS
type: SiteQuality
SIO_000300: 9.183e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.235283e6

GenotypeQuality
all individuals: 2993
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6522
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8527
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6597
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3981
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3752
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 984
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.641335390473689e-5
allele num: 60926
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10878
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 4.347e0

QD
type: SiteQuality
SIO_000300: 1.473e1

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.484e0

VQSLOD
type: SiteQuality
SIO_000300: 8.83e-1

DP
type: SiteQuality
SIO_000300: 1.179522e6

GenotypeQuality
all individuals: 4032
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7770
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5348
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3471
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6752
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2968
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6897
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.66024704476026e-5
allele num: 60232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.154943e6

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 6.783e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

VQSLOD
type: SiteQuality
SIO_000300: -1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

GenotypeQuality
all individuals: 1903
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6937
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8307
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3509
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7448
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5678
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 627
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4038
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6760
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.331112591605596e-5
allele num: 60040
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.314456035767511e-5
allele num: 10736
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.151416e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.621e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: -7.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.469e0

QD
type: SiteQuality
SIO_000300: 1.331e1

FS
type: SiteQuality
SIO_000300: 5.574e0

VQSLOD
type: SiteQuality
SIO_000300: 3.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1993
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6942
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6564
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3493
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4011
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5579
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1411
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4822
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6774
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.186521120075937e-4
allele num: 8428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11116
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.150023e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.11e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.413e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

GenotypeQuality
all individuals: 1450
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1579
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6876
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2603
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3651
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.83671060397403e-5
allele num: 10166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557875058420315e-5
allele num: 64190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

DP
type: SiteQuality
SIO_000300: 1.671638e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.221e0

QD
type: SiteQuality
SIO_000300: 1.39e1

FS
type: SiteQuality
SIO_000300: 9.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6881
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39941
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3650
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.115653040877368e-5
allele num: 64192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9422
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

DP
type: SiteQuality
SIO_000300: 1.672168e6

MQRankSum
type: SiteQuality
SIO_000300: 7.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.12e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 1.92e-1

FS
type: SiteQuality
SIO_000300: 5.673e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.688e1

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1580
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3648
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3013
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6887
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64200
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.173708920187793e-4
allele num: 8520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9480
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.05e0

DP
type: SiteQuality
SIO_000300: 1.675e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.53e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.05e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6888
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3649
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40034
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.623753716984433e-4
allele num: 11434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557195801800118e-5
allele num: 64218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.232e1

MQRankSum
type: SiteQuality
SIO_000300: -5.17e-1

FS
type: SiteQuality
SIO_000300: 5.75e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 1.675645e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.23e-2

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6889
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40069
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1581
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3644
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55714730613516e-5
allele num: 64220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.676086e6

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

QD
type: SiteQuality
SIO_000300: 1.425e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.222e0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1448
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6916
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3794
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40318
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3642
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 689
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553036185743128e-5
allele num: 64390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.5806e1

VQSLOD
type: SiteQuality
SIO_000300: -2.211e0

DP
type: SiteQuality
SIO_000300: 1.684317e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.27e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-1

GenotypeDepth
all individuals: 624
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 147
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3810
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3641
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40653
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6931
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1594
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.719916288803627e-5
allele num: 11468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10536
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.016e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.98e-1

DP
type: SiteQuality
SIO_000300: 1.693065e6

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 8.41e0

QD
type: SiteQuality
SIO_000300: 1.188e1

VQSLOD
type: SiteQuality
SIO_000300: 6.59e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3641
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1449
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6958
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41173
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3185
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53817756721836e-5
allele num: 65012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11604
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 1.704822e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.577e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 1.248e1

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41706
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1448
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3640
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6979
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.052826542116283e-5
allele num: 12418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.367e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 8.787000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.237e0

QD
type: SiteQuality
SIO_000300: 2.306e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.712954e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
all individuals: 199
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1452
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2563
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3639
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42004
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528350909368791e-5
allele num: 65430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 4.473e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.71645e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.934e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.45e-1

QD
type: SiteQuality
SIO_000300: 1.36e1