http://identifiers.org/exac.variant/6-13053548-AAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053548
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053546
    reference: chr 6
allele count: 1
allele frequency: 1.400520993809697e-5
allele num: 71402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.251-46_251-45delAC
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.251-46_251-45delAC
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.394-46_394-45delAC
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.357-46_357-45delAC
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-185-46_-185-45delAC
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-185-46_-185-45delAC
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7692
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14207
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5798
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5271
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2857
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: AAC
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

6-13053559-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053559
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053559
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 73432
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.394-38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-185-38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.251-38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.357-38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.251-38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-185-38T>C
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20708
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5539
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5778
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18864
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

6-13053564-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053564
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053564
    reference: chr 6
allele count: 1
allele frequency: 1.344845208316523e-5
allele num: 74358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.394-33C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.357-33C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.251-33C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-185-33C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.251-33C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-185-33C>T
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20854
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 374
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9939
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 306
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 463
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5615
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

6-13053568-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053568
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053568
    reference: chr 6
allele count: 2
allele frequency: 2.634351949420443e-5
allele num: 75920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-185-29G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.357-29G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.251-29G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.394-29G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.251-29G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-185-29G>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13281
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20762
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3621
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13618
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20669
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

6-13053569-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053569
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053569
    reference: chr 6
allele count: 1
allele frequency: 1.304393196285088e-5
allele num: 76664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.251-28T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-185-28T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.357-28T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.251-28T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-185-28T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.394-28T>C
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3443
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20482
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6614
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

6-13053575-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053575
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053575
    reference: chr 6
allele count: 1
allele frequency: 1.240633219195077e-5
allele num: 80604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-185-22T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.251-22T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.394-22T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.251-22T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-185-22T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.357-22T>G
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 19378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5098
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19618
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2301
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4304
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-13053593-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053593
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053593
    reference: chr 6
allele count: 1
allele frequency: 1.030566605519715e-5
allele num: 97034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-185-4C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.394-4C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.251-4C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.357-4C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-185-4C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.251-4C>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33022
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2802
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
hgvs: n.394-4C>A
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

6-13053605-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053605
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053605
    reference: chr 6
allele count: 11
allele frequency: 1.038166786213145e-4
allele num: 105956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.402G>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.259G>T
  hgvsp: ENSP00000368655.1:p.Val87Leu
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.365G>T
  hgvsp: ENSP00000384760.2:p.Val123Leu
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.259G>T
  hgvsp: ENSP00000329880.7:p.Val87Leu
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-177G>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-177G>T
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36970
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38787
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val123Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

6-13053606-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053606
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053606
    reference: chr 6
allele count: 1
allele frequency: 9.447152628197861e-6
allele num: 105852
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.260T>C
  hgvsp: ENSP00000368655.1:p.Val87Ala
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-176T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-176T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.260T>C
  hgvsp: ENSP00000329880.7:p.Val87Ala
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.366T>C
  hgvsp: ENSP00000384760.2:p.Val123Ala
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.403T>C
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8603
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33956
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val123Ala
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

6-13053618-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053618
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053618
    reference: chr 6
allele count: 94
allele frequency: 9.435856253764305e-4
allele num: 99620
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.378C>G
  hgvsp: ENSP00000384760.2:p.Ala127Gly
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.272C>G
  hgvsp: ENSP00000368655.1:p.Ala91Gly
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-164C>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-164C>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.415C>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.272C>G
  hgvsp: ENSP00000329880.7:p.Ala91Gly
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6362
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8342
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28926
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2047
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 29385
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4038
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 9.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6929
  bin: 2.25e1
  variant carriers: 2
hgvs: p.Ala127Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

6-13053618-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053618
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053618
    reference: chr 6
allele count: 7
allele frequency: 7.026701465569163e-5
allele num: 99620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.272C>T
  hgvsp: ENSP00000329880.7:p.Ala91Val
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.272C>T
  hgvsp: ENSP00000368655.1:p.Ala91Val
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-164C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-164C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.415C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.378C>T
  hgvsp: ENSP00000384760.2:p.Ala127Val
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6362
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8342
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28926
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4038
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6929
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala127Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-13053619-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053619
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053619
    reference: chr 6
allele count: 2
allele frequency: 1.857493127275429e-5
allele num: 107672
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.273G>A
  hgvsp: ENST00000379350.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-163G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.273G>A
  hgvsp: ENST00000332995.7:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-163G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.379G>A
  hgvsp: ENST00000406205.2:c.379G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.416G>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29521
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7464
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2337
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2433
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala127Ala
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

6-13053621-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053621
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053621
    reference: chr 6
allele count: 91
allele frequency: 8.613672074664446e-4
allele num: 105646
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.275C>G
  hgvsp: ENSP00000368655.1:p.Ala92Gly
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.275C>G
  hgvsp: ENSP00000329880.7:p.Ala92Gly
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-161C>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-161C>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.381C>G
  hgvsp: ENSP00000384760.2:p.Ala128Gly
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.418C>G
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 30168
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6778
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7362
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31707
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 4.25e1
  variant carriers: 1
hgvs: p.Ala128Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

6-13053622-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053622
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053622
    reference: chr 6
allele count: 4
allele frequency: 3.698224852071006e-5
allele num: 108160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-160G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.276G>A
  hgvsp: ENST00000379350.1:c.276G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.276G>A
  hgvsp: ENST00000332995.7:c.276G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.419G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.382G>A
  hgvsp: ENST00000406205.2:c.382G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-160G>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7550
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6982
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1904
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala128Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

6-13053626-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053626
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053626
    reference: chr 6
allele count: 2
allele frequency: 1.831132921938804e-5
allele num: 109222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.423C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.386C>T
  hgvsp: ENSP00000384760.2:p.Arg130Cys
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-156C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.280C>T
  hgvsp: ENSP00000368655.1:p.Arg94Cys
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.280C>T
  hgvsp: ENSP00000329880.7:p.Arg94Cys
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-156C>T
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4841
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32538
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6468
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg130Cys
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

6-13053627-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053627
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053627
    reference: chr 6
allele count: 4
allele frequency: 3.647305553022704e-5
allele num: 109670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.387G>A
  hgvsp: ENSP00000384760.2:p.Arg130His
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.281G>A
  hgvsp: ENSP00000368655.1:p.Arg94His
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.281G>A
  hgvsp: ENSP00000329880.7:p.Arg94His
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.424G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-155G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-155G>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33269
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6270
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg130His
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

6-13053627-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053627
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053627
    reference: chr 6
allele count: 2
allele frequency: 1.823652776511352e-5
allele num: 109670
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-155G>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.281G>C
  hgvsp: ENSP00000329880.7:p.Arg94Pro
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.281G>C
  hgvsp: ENSP00000368655.1:p.Arg94Pro
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.424G>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-155G>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.387G>C
  hgvsp: ENSP00000384760.2:p.Arg130Pro
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33269
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8100
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37306
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg130Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

6-13053631-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053631
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053631
    reference: chr 6
allele count: 1
allele frequency: 9.045680687471733e-6
allele num: 110550
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.285T>C
  hgvsp: ENST00000332995.7:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.428T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-151T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.391T>C
  hgvsp: ENST00000406205.2:c.391T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.285T>C
  hgvsp: ENST00000379350.1:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-151T>C
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8625
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5902
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser131Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/6-13053636-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053636
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053636
    reference: chr 6
allele count: 1
allele frequency: 8.960734063334468e-6
allele num: 111598
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.396C>A
  hgvsp: ENSP00000384760.2:p.Ser133Tyr
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.433C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.290C>A
  hgvsp: ENSP00000368655.1:p.Ser97Tyr
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-146C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.290C>A
  hgvsp: ENSP00000329880.7:p.Ser97Tyr
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-146C>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9408
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33942
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5371
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38287
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser133Tyr
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

6-13053639-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053639
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053639
    reference: chr 6
allele count: 1
allele frequency: 8.925383791503035e-6
allele num: 112040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.399T>A
  hgvsp: ENSP00000384760.2:p.Leu134His
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.293T>A
  hgvsp: ENSP00000329880.7:p.Leu98His
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.436T>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-143T>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.293T>A
  hgvsp: ENSP00000368655.1:p.Leu98His
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-143T>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34442
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5049
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu134His
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum

6-13053640-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053640
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053640
    reference: chr 6
allele count: 12
allele frequency: 1.068642467851672e-4
allele num: 112292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-142C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.294C>T
  hgvsp: ENST00000379350.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.400C>T
  hgvsp: ENST00000406205.2:c.400C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.437C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-142C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.294C>T
  hgvsp: ENST00000332995.7:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9904
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34567
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4908
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu134Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

6-13053643-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053643
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053643
    reference: chr 6
allele count: 151
allele frequency: 1.332321592433119e-3
allele num: 113336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.297C>T
  hgvsp: ENST00000379350.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.440C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-139C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.297C>T
  hgvsp: ENST00000332995.7:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-139C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.403C>T
  hgvsp: ENST00000406205.2:c.403C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 10404
  bin: 2.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 35135
  bin: 2.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3281
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4419
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40098
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val135Val
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP

6-13053652-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053652
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053652
    reference: chr 6
allele count: 17
allele frequency: 1.477875336868643e-4
allele num: 115030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-130C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.449C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.306C>T
  hgvsp: ENST00000332995.7:c.306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-130C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.306C>T
  hgvsp: ENST00000379350.1:c.306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.412C>T
  hgvsp: ENST00000406205.2:c.412C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11694
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35634
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2645
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr138Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/6-13053655-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053655
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053655
    reference: chr 6
allele count: 4
allele frequency: 3.466204506065858e-5
allele num: 115400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.452C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-127C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-127C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.415C>A
  hgvsp: ENSP00000384760.2:p.His139Gln
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.309C>A
  hgvsp: ENSP00000329880.7:p.His103Gln
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.309C>A
  hgvsp: ENSP00000368655.1:p.His103Gln
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12011
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His139Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

6-13053655-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053655
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053655
    reference: chr 6
allele count: 1
allele frequency: 8.665511265164645e-6
allele num: 115400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-127C>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-127C>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.309C>G
  hgvsp: ENSP00000329880.7:p.His103Gln
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.309C>G
  hgvsp: ENSP00000368655.1:p.His103Gln
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.415C>G
  hgvsp: ENSP00000384760.2:p.His139Gln
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.452C>G
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3542
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42600
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His139Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-13053669-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053669
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053669
    reference: chr 6
allele count: 2
allele frequency: 1.71109818281373e-5
allele num: 116884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.466G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-113G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-113G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.429G>A
  hgvsp: ENSP00000384760.2:p.Arg144His
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.323G>A
  hgvsp: ENSP00000329880.7:p.Arg108His
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.323G>A
  hgvsp: ENSP00000368655.1:p.Arg108His
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35882
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44882
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3590
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg144His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/6-13053671-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053671
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053671
    reference: chr 6
allele count: 1
allele frequency: 8.533296924599789e-6
allele num: 117188
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.325A>C
  hgvsp: ENST00000379350.1:c.325A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.468A>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.431A>C
  hgvsp: ENST00000406205.2:c.431A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.325A>C
  hgvsp: ENST00000332995.7:c.325A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-111A>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-111A>C
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45301
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg145Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

6-13053682-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053682
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053682
    reference: chr 6
allele count: 1
allele frequency: 8.481188723411473e-6
allele num: 117908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-100G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.336G>A
  hgvsp: ENST00000332995.7:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.336G>A
  hgvsp: ENST00000379350.1:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-100G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.442G>A
  hgvsp: ENST00000406205.2:c.442G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.479G>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys148Lys
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

6-13053699-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053699
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053699
    reference: chr 6
allele count: 8
allele frequency: 6.776904310111141e-5
allele num: 118048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.459G>A
  hgvsp: ENSP00000384760.2:p.Arg154Lys
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.353G>A
  hgvsp: ENSP00000329880.7:p.Arg118Lys
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.11G>A
  hgvsp: ENSP00000412573.1:p.Arg4Lys
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-83G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-83G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.496G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.353G>A
  hgvsp: ENSP00000368655.1:p.Arg118Lys
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14505
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36577
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg154Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

6-13053706-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053706
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053706
    reference: chr 6
allele count: 8
allele frequency: 6.785066069580852e-5
allele num: 117906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-76C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.360C>T
  hgvsp: ENST00000332995.7:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.466C>T
  hgvsp: ENST00000406205.2:c.466C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.360C>T
  hgvsp: ENST00000379350.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.18C>T
  hgvsp: ENST00000434977.1:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.503C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-76C>T
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36382
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14610
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe156Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

6-13053737-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053737
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053737
    reference: chr 6
allele count: 3
allele frequency: 2.625866535956866e-5
allele num: 114248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-45G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.497G>A
  hgvsp: ENSP00000384760.2:p.Glu167Lys
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.391G>A
  hgvsp: ENSP00000368655.1:p.Glu131Lys
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.534G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.391G>A
  hgvsp: ENSP00000329880.7:p.Glu131Lys
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-45G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.49G>A
  hgvsp: ENSP00000412573.1:p.Glu17Lys
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5373
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu167Lys
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

6-13053742-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053742
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053742
    reference: chr 6
allele count: 1
allele frequency: 8.849714154232818e-6
allele num: 112998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.396G>A
  hgvsp: ENST00000332995.7:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-40G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.396G>A
  hgvsp: ENST00000379350.1:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-40G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.502G>A
  hgvsp: ENST00000406205.2:c.502G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.54G>A
  hgvsp: ENST00000434977.1:c.54G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.539G>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13714
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys168Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

6-13053751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053751
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053751
    reference: chr 6
allele count: 1
allele frequency: 9.096697898662786e-6
allele num: 109930
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.405C>T
  hgvsp: ENST00000332995.7:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.511C>T
  hgvsp: ENST00000406205.2:c.511C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-31C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-31C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.405C>T
  hgvsp: ENST00000379350.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.548C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.63C>T
  hgvsp: ENST00000434977.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9940
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His171His
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

6-13053753-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053753
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053753
    reference: chr 6
allele count: 3
allele frequency: 2.753303964757709e-5
allele num: 108960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-29C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.407C>T
  hgvsp: ENSP00000329880.7:p.Thr136Met
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.550C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.513C>T
  hgvsp: ENSP00000384760.2:p.Thr172Met
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.407C>T
  hgvsp: ENSP00000368655.1:p.Thr136Met
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.65C>T
  hgvsp: ENSP00000412573.1:p.Thr22Met
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-29C>T
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2639
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36370
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr172Met
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

6-13053754-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053754
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053754
    reference: chr 6
allele count: 4
allele frequency: 3.68588857558836e-5
allele num: 108522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.408G>A
  hgvsp: ENST00000379350.1:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-28G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.66G>A
  hgvsp: ENST00000434977.1:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-28G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.551G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.408G>A
  hgvsp: ENST00000332995.7:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.514G>A
  hgvsp: ENST00000406205.2:c.514G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11675
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8577
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr172Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD

6-13053768-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053768
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053768
    reference: chr 6
allele count: 2
allele frequency: 1.941445988972587e-5
allele num: 103016
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-21+7T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.558+7T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.73+7T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.521+7T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-21+7T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.415+7T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.415+7T>G
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.75e1
  variant carriers: 0
hgvs: c.-21+7T>G
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

6-13053778-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053778
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053778
    reference: chr 6
allele count: 1
allele frequency: 1.000920847179405e-5
allele num: 99908
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-21+17T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.415+17T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-21+17T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.73+17T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.558+17T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.521+17T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.415+17T>C
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4795
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22359
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ

6-13053781-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053781
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053781
    reference: chr 6
allele count: 1
allele frequency: 1.018807180553009e-5
allele num: 98154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.558+20C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-21+20C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.415+20C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.521+20C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.415+20C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.73+20C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-21+20C>T
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5149
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

6-13053782-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053782
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053782
    reference: chr 6
allele count: 1
allele frequency: 1.016880211511084e-5
allele num: 98340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.415+21A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.415+21A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.73+21A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-21+21A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.558+21A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.521+21A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-21+21A>G
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23331
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13619
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

6-13053785-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053785
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053785
    reference: chr 6
allele count: 1
allele frequency: 1.026251513720983e-5
allele num: 97442
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.558+24T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-21+24T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.73+24T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.415+24T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.415+24T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.521+24T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-21+24T>C
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9431
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6343
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5489
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

6-13053799-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053799
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053799
    reference: chr 6
allele count: 1
allele frequency: 1.1059500110595e-5
allele num: 90420
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.415+38T>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.415+38T>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-21+38T>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.521+38T>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.73+38T>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.558+38T>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-21+38T>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10741
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21631
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4571
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

6-13053799-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053799
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053799
    reference: chr 6
allele count: 2
allele frequency: 2.211900022119e-5
allele num: 90420
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.521+38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-21+38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.415+38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.415+38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-21+38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.558+38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.73+38T>C
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10741
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23501
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4571
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3016
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

6-13053801-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13053801
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13053801
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 88810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.415+40T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.558+40T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.415+40T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-21+40T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-21+40T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.521+40T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.73+40T>C
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13473
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11032
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7987
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3264
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

6-13160387-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160387
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160387
    reference: chr 6
allele count: 940
allele frequency: 7.78919456413656e-3
allele num: 120680
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-20-49A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.74-49A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.522-49A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.416-49A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.559-49A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-20-49A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.416-49A>G
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 5.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 9.75e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 3.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 6789
  bin: 4.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 3.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7240
  bin: 4.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 6.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 7.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 5.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 6.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 7.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 8.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2399
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 44
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

6-13160395-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160395
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160395
    reference: chr 6
allele count: 2
allele frequency: 1.657193046417977e-5
allele num: 120686
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.416-41A>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.74-41A>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.559-41A>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.522-41A>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.416-41A>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-20-41A>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-20-41A>T
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

6-13160398-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160398
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160398
    reference: chr 6
allele count: 1
allele frequency: 8.284455048546906e-6
allele num: 120708
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-20-38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-20-38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.416-38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.522-38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.559-38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.416-38T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.74-38T>C
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

6-13160399-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160399
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160399
    reference: chr 6
allele count: 4
allele frequency: 3.31389183457052e-5
allele num: 120704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.522-37A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.416-37A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-20-37A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.559-37A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.416-37A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-20-37A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.74-37A>G
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6610
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3544
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2980
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2625
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

6-13160400-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160400
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160400
    reference: chr 6
allele count: 1
allele frequency: 8.283768783445716e-6
allele num: 120718
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.416-36C>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.416-36C>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.74-36C>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-20-36C>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.559-36C>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-20-36C>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.522-36C>G
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3554
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2465
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

6-13160401-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160401
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160401
    reference: chr 6
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.522-35T>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.416-35T>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.74-35T>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-20-35T>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.559-35T>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-20-35T>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.416-35T>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3570
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

6-13160406-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160406
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160406
    reference: chr 6
allele count: 114
allele frequency: 9.441462929835022e-4
allele num: 120744
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.522-30T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.416-30T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-20-30T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.74-30T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.559-30T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-20-30T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.416-30T>C
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6807
  bin: 4.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2479
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3620
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41872
  bin: 9.75e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 3
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

6-13160411-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160411
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160411
    reference: chr 6
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.522-25C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.559-25C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.416-25C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.74-25C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.416-25C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-20-25C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-20-25C>T
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2985
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41814
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

6-13160412-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160412
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160411
    reference: chr 6
allele count: 4
allele frequency: 3.312464805061446e-5
allele num: 120756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.522-21delC
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-20-21delC
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.416-21delC
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.416-21delC
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-20-21delC
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.74-21delC
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.559-21delC
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41814
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3671
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2986
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: TC
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-13160413-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160413
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160413
    reference: chr 6
allele count: 3
allele frequency: 2.484430899695243e-5
allele num: 120752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-20-23C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-20-23C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.416-23C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.522-23C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.74-23C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.559-23C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.416-23C>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6818
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3284
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3680
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

6-13160414-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160414
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160414
    reference: chr 6
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.522-22C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.74-22C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-20-22C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.416-22C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.416-22C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.559-22C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-20-22C>T
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3284
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

6-13160428-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160428
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160428
    reference: chr 6
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.559-8G>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-20-8G>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.416-8G>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.416-8G>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.522-8G>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-20-8G>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.74-8G>C
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2497
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: c.-20-8G>C
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

6-13160430-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160430
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160430
    reference: chr 6
allele count: 3
allele frequency: 2.484142887898912e-5
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.522-6T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.416-6T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.74-6T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.559-6T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-20-6T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.416-6T>C
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-20-6T>C
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: c.-20-6T>C
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

6-13160432-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160432
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160432
    reference: chr 6
allele count: 18
allele frequency: 1.490485732739347e-4
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.522-4G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.416-4G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.74-4G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.416-4G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.559-4G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-20-4G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-20-4G>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: c.-20-4G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-13160437-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160437
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160437
    reference: chr 6
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.-19C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.417C>A
  hgvsp: ENST00000332995.7:c.417C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.-19C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.560C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.523C>A
  hgvsp: ENST00000406205.2:c.523C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.417C>A
  hgvsp: ENST00000379350.1:c.417C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.75C>A
  hgvsp: ENST00000434977.1:c.75C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3282
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: c.-19C>A
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

6-13160456-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160456
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160456
    reference: chr 6
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.579A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.1A>G
  hgvsp: ENSP00000368650.2:p.Met1?
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.542A>G
  hgvsp: ENSP00000384760.2:p.Met182Val
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.436A>G
  hgvsp: ENSP00000329880.7:p.Met146Val
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.94A>G
  hgvsp: ENSP00000412573.1:p.Met32Val
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.1A>G
  hgvsp: ENSP00000397669.2:p.Met1?
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.436A>G
  hgvsp: ENSP00000368655.1:p.Met146Val
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

6-13160481-T-TGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160481
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160484
    reference: chr 6
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: TGTG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.604_605insGTG
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  consequence: stop_gained
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.119_120insGTG
  hgvsp: ENSP00000412573.1:p.Ile40delinsMetTer
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  consequence: stop_gained
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.26_27insGTG
  hgvsp: ENSP00000368650.2:p.Ile9delinsMetTer
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  consequence: stop_gained
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.567_568insGTG
  hgvsp: ENSP00000384760.2:p.Ile190delinsMetTer
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  consequence: stop_gained
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.461_462insGTG
  hgvsp: ENSP00000368655.1:p.Ile154delinsMetTer
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  consequence: stop_gained
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.461_462insGTG
  hgvsp: ENSP00000329880.7:p.Ile154delinsMetTer
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  consequence: stop_gained
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.26_27insGTG
  hgvsp: ENSP00000397669.2:p.Ile9delinsMetTer
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: stop gained
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile9delinsMetTer
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

6-13160482-A-ACTTGACT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160482
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160489
    reference: chr 6
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: ACTTGACT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.462_463insCTTGACT
  hgvsp: ENSP00000329880.7:p.Lys155LeufsTer3
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.120_121insCTTGACT
  hgvsp: ENSP00000412573.1:p.Lys41LeufsTer3
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.27_28insCTTGACT
  hgvsp: ENSP00000368650.2:p.Lys10LeufsTer3
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.462_463insCTTGACT
  hgvsp: ENSP00000368655.1:p.Lys155LeufsTer3
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.27_28insCTTGACT
  hgvsp: ENSP00000397669.2:p.Lys10LeufsTer3
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.568_569insCTTGACT
  hgvsp: ENSP00000384760.2:p.Lys191LeufsTer3
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.605_606insCTTGACT
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41810
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3737
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys10LeufsTer3
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

6-13160485-G-GGTCACT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160485
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160491
    reference: chr 6
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: GGTCACT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.608_609insGTCACT
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.123_124insGTCACT
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.30_31insGTCACT
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.465_466insGTCACT
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.571_572insGTCACT
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.30_31insGTCACT
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.465_466insGTCACT
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: inframe insertion
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 5477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3737
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2504
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys10_Arg11insValThr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

6-13160488-A-ACTCATGTCCCATAGCTTAGAGGGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160488
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160512
    reference: chr 6
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: ACTCATGTCCCATAGCTTAGAGGGT
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: inframe insertion
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

6-13160515-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160515
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160515
    reference: chr 6
allele count: 5
allele frequency: 4.140375283615707e-5
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.601A>G
  hgvsp: ENST00000406205.2:c.601A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.60A>G
  hgvsp: ENST00000457702.2:c.60A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.153A>G
  hgvsp: ENST00000434977.1:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.60A>G
  hgvsp: ENST00000379345.2:c.60A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.495A>G
  hgvsp: ENST00000379350.1:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.638A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.495A>G
  hgvsp: ENST00000332995.7:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2628
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3282
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: c.60A>G
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

6-13160518-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160518
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160518
    reference: chr 6
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.61+2T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.602+2T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.639+2T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.496+2T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.496+2T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.61+2T>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.154+2T>G
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41810
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3281
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2501
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
hgvs: c.61+2T>G
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

6-13160519-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160519
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160519
    reference: chr 6
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.61+3A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.602+3A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.496+3A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.61+3A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.154+3A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.496+3A>G
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.639+3A>G
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2626
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3721
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: c.61+3A>G
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

6-13160521-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160521
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160521
    reference: chr 6
allele count: 2
allele frequency: 1.656204971927326e-5
allele num: 120758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.61+5G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.61+5G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.496+5G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.602+5G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.496+5G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.154+5G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.639+5G>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: c.61+5G>A
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

6-13160522-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160522
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160522
    reference: chr 6
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.496+6G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.61+6G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.154+6G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.61+6G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.496+6G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.602+6G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.639+6G>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3719
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2626
  bin: 7.75e1
  variant carriers: 0
hgvs: c.61+6G>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

6-13160534-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160534
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160534
    reference: chr 6
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.602+18G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.61+18G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.639+18G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.496+18G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.61+18G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.154+18G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.496+18G>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3665
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41807
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2495
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3283
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-13160540-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160540
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160540
    reference: chr 6
allele count: 5
allele frequency: 4.140855335078013e-5
allele num: 120748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.496+24C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.639+24C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.61+24C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.154+24C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.496+24C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.602+24C>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.61+24C>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2621
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41807
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2488
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3284
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

6-13160542-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160542
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160542
    reference: chr 6
allele count: 2
allele frequency: 1.656643970644269e-5
allele num: 120726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.154+26C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.496+26C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.639+26C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.496+26C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.61+26C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.61+26C>T
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.602+26C>T
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6816
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7291
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2969
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

6-13160543-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 13160543
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 13160543
    reference: chr 6
allele count: 10
allele frequency: 8.281985026171072e-5
allele num: 120744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000329880
  ensembl transcript: ENST00000332995
  gene symbol: PHACTR1
  hgvsc: ENST00000332995.7:c.496+27G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl transcript: ENST00000482982
  gene symbol: PHACTR1
  hgvsc: ENST00000482982.1:n.639+27G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000384760
  ensembl transcript: ENST00000406205
  gene symbol: PHACTR1
  hgvsc: ENST00000406205.2:c.602+27G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000412573
  ensembl transcript: ENST00000434977
  gene symbol: PHACTR1
  hgvsc: ENST00000434977.1:c.154+27G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000397669
  ensembl transcript: ENST00000457702
  gene symbol: PHACTR1
  hgvsc: ENST00000457702.2:c.61+27G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368655
  ensembl transcript: ENST00000379350
  gene symbol: PHACTR1
  hgvsc: ENST00000379350.1:c.496+27G>A
  variant of: http://identifiers.org/hgnc/20990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112137
  ensembl protein: ENSP00000368650
  ensembl transcript: ENST00000379345
  gene symbol: PHACTR1
  hgvsc: ENST00000379345.2:c.61+27G>A
  variant of: http://identifiers.org/hgnc/20990
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3589
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2621
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3281
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G

GenotypeQuality
all individuals: 5779
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8409
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2473
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2794
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 943
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.540392236561325e-5
allele num: 39364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6196
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

DP
type: SiteQuality
SIO_000300: 8.49353e5

QD
type: SiteQuality
SIO_000300: 1.727e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQ
type: SiteQuality
SIO_000300: 6.236e1

VQSLOD
type: SiteQuality
SIO_000300: 5.28e0

GenotypeQuality
all individuals: 1823
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 595
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8308
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6518
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40448
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.86128e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.517e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.371e1

GenotypeQuality
all individuals: 1320
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4624
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7717
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4784
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.079002079002079e-4
allele num: 4810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10998
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.39e-1

FS
type: SiteQuality
SIO_000300: 3.297e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 1.391e1

DP
type: SiteQuality
SIO_000300: 9.23397e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQ
type: SiteQuality
SIO_000300: 5.896e1

VQSLOD
type: SiteQuality
SIO_000300: -3.42e-2

GenotypeQuality
all individuals: 1190
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6785
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5275
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.676164934629568e-4
allele num: 5966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4978
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.532801961986511e-4
allele num: 6524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.59e0

VQSLOD
type: SiteQuality
SIO_000300: 3.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

DP
type: SiteQuality
SIO_000300: 9.63063e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

FS
type: SiteQuality
SIO_000300: 5.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
all individuals: 395
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5203
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13581
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2797
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.365967917475039e-5
allele num: 42266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.705e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.023e0

DP
type: SiteQuality
SIO_000300: 9.7128e5

QD
type: SiteQuality
SIO_000300: 1.372e1

MQRankSum
type: SiteQuality
SIO_000300: -1.445e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

GenotypeQuality
all individuals: 559
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2799
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 422
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19736
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.457725947521866e-4
allele num: 6860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11660
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.71e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

VQSLOD
type: SiteQuality
SIO_000300: -3.067e0

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

DP
type: SiteQuality
SIO_000300: 1.037374e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

QD
type: SiteQuality
SIO_000300: 2.96e0

FS
type: SiteQuality
SIO_000300: 1.316e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

GenotypeQuality
all individuals: 877
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12240
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33701
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2261
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.859703935133527e-5
allele num: 53772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13154
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.036e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.279e0

QD
type: SiteQuality
SIO_000300: 1.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: -9.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

DP
type: SiteQuality
SIO_000300: 1.236689e6

GenotypeQuality
all individuals: 497
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2821
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.0275380189067e-4
allele num: 9732
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 7.14387769681383e-4
allele num: 13998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7692
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 4.843e0

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

MQ
type: SiteQuality
SIO_000300: 5.934e1

QD
type: SiteQuality
SIO_000300: 9.859999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.938e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.97e-1

DP
type: SiteQuality
SIO_000300: 1.328958e6

GenotypeQuality
all individuals: 2802
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1948
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2505
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.698023500645249e-5
allele num: 58892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6126
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.018e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 1.337296e6

FS
type: SiteQuality
SIO_000300: 3.389e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.021e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

GenotypeQuality
all individuals: 346
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 268
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2160
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1818
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 822
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1533
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 335
bin: 8.25e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 46
allele frequency: 8.336655913588749e-4
allele num: 55178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 36
allele frequency: 7.314099959366111e-3
allele num: 4922
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.324503311258278e-3
allele num: 7550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14132
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.923976608187134e-3
allele num: 684
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.049e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.817e1

VQSLOD
type: SiteQuality
SIO_000300: -1.875e2

FS
type: SiteQuality
SIO_000300: 2.00234e2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e0

DP
type: SiteQuality
SIO_000300: 1.366049e6

QD
type: SiteQuality
SIO_000300: 4.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e0

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29385
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 346
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2047
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4922
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.649006622516556e-4
allele num: 7550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.812316502954076e-5
allele num: 55178
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.158868787689748e-4
allele num: 9618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.15e0

MQ
type: SiteQuality
SIO_000300: 5.817e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.049e0

VQSLOD
type: SiteQuality
SIO_000300: -1.875e2

FS
type: SiteQuality
SIO_000300: 2.00234e2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

DP
type: SiteQuality
SIO_000300: 1.366049e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e0

GenotypeQuality
all individuals: 1985
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2666
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 221
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31771
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.006018054162487e-4
allele num: 9970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60008
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.053e0

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-1

DP
type: SiteQuality
SIO_000300: 1.334932e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.58e-1

QD
type: SiteQuality
SIO_000300: 1.259e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2347
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7053
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 438
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 933
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 534
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 557
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2599
bin: 9.75e1
variant carriers: 65

European (Finnish)
type: Population
allele count: 35
allele frequency: 6.238859180035651e-3
allele num: 5610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.989361702127659e-3
allele num: 752
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.196172248803828e-3
allele num: 8360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 43
allele frequency: 7.285912772374529e-4
allele num: 59018
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7762
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.504e0

VQSLOD
type: SiteQuality
SIO_000300: -4.105e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.542e0

MQ
type: SiteQuality
SIO_000300: 5.887e1

FS
type: SiteQuality
SIO_000300: 8.8523e1

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

DP
type: SiteQuality
SIO_000300: 1.312569e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

GenotypeQuality
all individuals: 214
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2625
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 211
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33671
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2332
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.657055743355207e-5
allele num: 60348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14410
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.269035532994924e-4
allele num: 7880
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.0e-4
allele num: 10000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.231e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.587e0

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.516e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

DP
type: SiteQuality
SIO_000300: 1.322939e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.49e-1

GenotypeQuality
all individuals: 35986
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1984
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.888950124001103e-5
allele num: 14516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.63950552513362e-5
allele num: 60994
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.075e1

DP
type: SiteQuality
SIO_000300: 1.339837e6

FS
type: SiteQuality
SIO_000300: 4.027e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.365e0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

GenotypeQuality
all individuals: 900
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37306
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.266479388515058e-5
allele num: 61228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.372683596431023e-4
allele num: 14570
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 1.34772e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

FS
type: SiteQuality
SIO_000300: 7.224e0

QD
type: SiteQuality
SIO_000300: 1.032e1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

GenotypeQuality
all individuals: 253
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 160
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6270
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.266479388515058e-5
allele num: 61228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14570
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 7.224e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

DP
type: SiteQuality
SIO_000300: 1.34772e6

QD
type: SiteQuality
SIO_000300: 1.032e1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

GenotypeQuality
all individuals: 138
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2598
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2913
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.619852917355104e-5
allele num: 61734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

FS
type: SiteQuality
SIO_000300: 4.386e0

QD
type: SiteQuality
SIO_000300: 1.25e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

DP
type: SiteQuality
SIO_000300: 1.361373e6

GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2623
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 744
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.604569814832643e-5
allele num: 62322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14770
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.669e0

FS
type: SiteQuality
SIO_000300: 9.356e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

QD
type: SiteQuality
SIO_000300: 8.66e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: -4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.874e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.03e-1

DP
type: SiteQuality
SIO_000300: 1.382502e6

GenotypeQuality
all individuals: 714
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2602
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1560
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38849
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8946
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.737636437137851e-5
allele num: 14842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.94e0

VQSLOD
type: SiteQuality
SIO_000300: -3.432e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.391955e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.84e-1

GenotypeQuality
all individuals: 433
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3118
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39204
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.225490196078431e-3
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.787284971116714e-5
allele num: 62666
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.117068811438785e-4
allele num: 8952
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.637587710980466e-4
allele num: 10546
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

DP
type: SiteQuality
SIO_000300: 1.397422e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

GenotypeQuality
all individuals: 1030
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 305
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 9.75e1
variant carriers: 147

GenotypeQuality
all individuals: 809
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 8.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 116
allele frequency: 1.833470316747803e-3
allele num: 63268
num of homozygotes: 1

African
type: Population
allele count: 3
allele frequency: 3.311989401633915e-4
allele num: 9058
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.642544924720738e-4
allele num: 8236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.585791309863622e-4
allele num: 6306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

Latino
type: Population
allele count: 26
allele frequency: 2.436281859070465e-3
allele num: 10672
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.336362421488708e-4
allele num: 14966
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.423e0

QD
type: SiteQuality
SIO_000300: 1.257e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

FS
type: SiteQuality
SIO_000300: 5.36e-1

DP
type: SiteQuality
SIO_000300: 1.41356e6

GenotypeQuality
all individuals: 665
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64164
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.191176470588235e-5
allele num: 10880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 1.054296257248287e-3
allele num: 15176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

DP
type: SiteQuality
SIO_000300: 1.439955e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.226e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.145e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3324
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3542
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.628120893561104e-4
allele num: 15220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10934
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.37e-1

DP
type: SiteQuality
SIO_000300: 1.44455e6

MQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 8.66e-1

QD
type: SiteQuality
SIO_000300: 1.374e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
all individuals: 976
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 786
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 829
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10934
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553711817532084e-5
allele num: 64362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.44455e6

QD
type: SiteQuality
SIO_000300: 1.374e1

MQ
type: SiteQuality
SIO_000300: 5.984e1

MQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

FS
type: SiteQuality
SIO_000300: 8.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 644
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variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.070970119460738e-5
allele num: 65126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.272e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.69e-1

DP
type: SiteQuality
SIO_000300: 1.475686e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 409
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variant carriers: 0

GenotypeQuality
all individuals: 507
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variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.054407423028258e-4
allele num: 9484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.887e1

VQSLOD
type: SiteQuality
SIO_000300: -8.817e-1

QD
type: SiteQuality
SIO_000300: 1.072e1

DP
type: SiteQuality
SIO_000300: 1.477372e6

FS
type: SiteQuality
SIO_000300: 1.202e0

MQRankSum
type: SiteQuality
SIO_000300: -8.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

GenotypeQuality
all individuals: 353
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variant carriers: 0

GenotypeQuality
all individuals: 824
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3698
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variant carriers: 0

GenotypeQuality
all individuals: 203
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variant carriers: 0

GenotypeQuality
all individuals: 786
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variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525041176111755e-5
allele num: 65572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15630
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.852e-1

MQ
type: SiteQuality
SIO_000300: 5.892e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.983e0

QD
type: SiteQuality
SIO_000300: 1.001e1

DP
type: SiteQuality
SIO_000300: 1.489609e6

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.022e0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 756
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 293
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variant carriers: 0

GenotypeQuality
all individuals: 176
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GenotypeQuality
all individuals: 283
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GenotypeQuality
all individuals: 47300
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 296
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variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11226
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.442870632672333e-4
allele num: 8472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

QD
type: SiteQuality
SIO_000300: 1.093e1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

FS
type: SiteQuality
SIO_000300: 4.155e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.776e0

DP
type: SiteQuality
SIO_000300: 1.493906e6

GenotypeQuality
all individuals: 300
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3645
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 292
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 204
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GenotypeQuality
all individuals: 333
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.220665873233849e-4
allele num: 65538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

QD
type: SiteQuality
SIO_000300: 1.197e1

DP
type: SiteQuality
SIO_000300: 1.493296e6

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.07e0

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

GenotypeQuality
all individuals: 729
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 607
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variant carriers: 1

GenotypeQuality
all individuals: 3028
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.105590062111801e-4
allele num: 6440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.572030434509212e-5
allele num: 63612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15074
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 1.22e1

DP
type: SiteQuality
SIO_000300: 1.440901e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

VQSLOD
type: SiteQuality
SIO_000300: 6.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 291
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 369
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62942
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10592
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.234872808100766e-4
allele num: 8098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9246
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MQRankSum
type: SiteQuality
SIO_000300: -5.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

FS
type: SiteQuality
SIO_000300: 1.617e0

VQSLOD
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.61e-1

DP
type: SiteQuality
SIO_000300: 1.41771e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 365
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GenotypeQuality
all individuals: 1393
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GenotypeQuality
all individuals: 201
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GenotypeQuality
all individuals: 682
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GenotypeQuality
all individuals: 1470
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GenotypeQuality
all individuals: 2638
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GenotypeQuality
all individuals: 37901
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2590
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7868
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.631427825632994e-5
allele num: 61296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.653e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

QD
type: SiteQuality
SIO_000300: 2.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.1e0

MQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

DP
type: SiteQuality
SIO_000300: 1.357078e6

GenotypeQuality
all individuals: 288
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GenotypeQuality
all individuals: 764
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GenotypeQuality
all individuals: 38
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GenotypeQuality
all individuals: 1644
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GenotypeQuality
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GenotypeQuality
all individuals: 564
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GenotypeQuality
all individuals: 10988
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GenotypeQuality
all individuals: 201
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GenotypeQuality
all individuals: 387
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variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.936321453253036e-5
allele num: 60774
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.045e0

QD
type: SiteQuality
SIO_000300: 1.182e1

FS
type: SiteQuality
SIO_000300: 1.9389e1

VQSLOD
type: SiteQuality
SIO_000300: -3.423e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.337955e6

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.303055326176714e-5
allele num: 60550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7730
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.003205128205128e-4
allele num: 9984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 1.32785e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.431e0

FS
type: SiteQuality
SIO_000300: 4.079e0

QD
type: SiteQuality
SIO_000300: 1.271e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1930
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9238
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.297266253158741e-4
allele num: 8706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7296
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

DP
type: SiteQuality
SIO_000300: 1.182512e6

QD
type: SiteQuality
SIO_000300: 1.27e1

GenotypeQuality
all individuals: 454
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 198
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variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.788013159776856e-5
allele num: 55928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12918
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8864
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.764e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

DP
type: SiteQuality
SIO_000300: 1.091309e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.088e0

VQSLOD
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

QD
type: SiteQuality
SIO_000300: 1.585e1

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
all individuals: 804
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5782
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 326
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6928
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.933989209774674e-5
allele num: 12604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

DP
type: SiteQuality
SIO_000300: 1.04629e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.501e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.074e1

MQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.39e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e0

GenotypeQuality
all individuals: 384
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5788
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
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GenotypeQuality
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GenotypeQuality
all individuals: 493
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variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8686
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.442169022209403e-4
allele num: 6934
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55086
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.291e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.044522e6

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.139e0

FS
type: SiteQuality
SIO_000300: 1.951e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 443
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.830898238675894e-5
allele num: 54618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6866
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5790
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.27e0

DP
type: SiteQuality
SIO_000300: 1.021357e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3016
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.965872454195172e-5
allele num: 50868
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

FS
type: SiteQuality
SIO_000300: 2.169e0

DP
type: SiteQuality
SIO_000300: 9.37753e5

QD
type: SiteQuality
SIO_000300: 1.079e1

MQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.186e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7956
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.965872454195172e-5
allele num: 50868
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.724480893386844e-5
allele num: 11462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.169e0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.186e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 5.705e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

DP
type: SiteQuality
SIO_000300: 9.28913e5

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42060
bin: 9.75e1
variant carriers: 894

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3230
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2954
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2616
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2958
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.799856011519078e-4
allele num: 66672
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 877
allele frequency: 8.948979591836735e-2
allele num: 9800
num of homozygotes: 43

Latino
type: Population
allele count: 48
allele frequency: 4.14651002073255e-3
allele num: 11576
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.301733e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.75e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.748e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

MQ
type: SiteQuality
SIO_000300: 5.992e1

GenotypeQuality
all individuals: 47
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41838
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1841
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2963
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3413
bin: 6.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999130252226854e-5
allele num: 66686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.83e-2

DP
type: SiteQuality
SIO_000300: 3.294017e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.17e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2624
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41839
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2975
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2466
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.744e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.062e1

MQ
type: SiteQuality
SIO_000300: 5.722e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.294815e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.046e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
all individuals: 1567
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41839
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.081632653061225e-4
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

FS
type: SiteQuality
SIO_000300: 6.66e-1

DP
type: SiteQuality
SIO_000300: 3.295055e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

QD
type: SiteQuality
SIO_000300: 1.54e1

GenotypeQuality
all individuals: 33
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41839
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3272
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2623
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.83e0

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-1

QD
type: SiteQuality
SIO_000300: 1.6e1

MQ
type: SiteQuality
SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.41e-1

DP
type: SiteQuality
SIO_000300: 3.295379e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3272
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2477
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2625
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41836
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.523e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.295476e6

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.651e0

GenotypeQuality
all individuals: 2631
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.248268832998591e-4
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 97
allele frequency: 5.874515503875969e-3
allele num: 16512
num of homozygotes: 3

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

QD
type: SiteQuality
SIO_000300: 1.586e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.88e-2

DP
type: SiteQuality
SIO_000300: 3.297962e6

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e0

FS
type: SiteQuality
SIO_000300: 9.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.44e-1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3285
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2632
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2495
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.95e-1

FS
type: SiteQuality
SIO_000300: 1.61e0

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

DP
type: SiteQuality
SIO_000300: 3.296449e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3284
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2634
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49599856128046e-5
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

DP
type: SiteQuality
SIO_000300: 3.296538e6

MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

MQ
type: SiteQuality
SIO_000300: 6.008e1

QD
type: SiteQuality
SIO_000300: 1.329e1

FS
type: SiteQuality
SIO_000300: 6.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.479e0

GenotypeQuality
all individuals: 2497
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2635
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41811
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2983
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496133325340207e-5
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.83e-2

QD
type: SiteQuality
SIO_000300: 1.289e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.506e0

FS
type: SiteQuality
SIO_000300: 8.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 3.296315e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: -9.76e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3689
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.9e0

VQSLOD
type: SiteQuality
SIO_000300: 3.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.429999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.688e0

DP
type: SiteQuality
SIO_000300: 3.296704e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.316e0

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

FS
type: SiteQuality
SIO_000300: 1.533e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

DP
type: SiteQuality
SIO_000300: 3.29706e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

QD
type: SiteQuality
SIO_000300: 6.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 41814
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.060599877576005e-4
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.297112e6

FS
type: SiteQuality
SIO_000300: 1.852e0

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.4e-2

QD
type: SiteQuality
SIO_000300: 1.609e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 5.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-2

GenotypeQuality
all individuals: 1592
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 18

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.547350755214577e-4
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

DP
type: SiteQuality
SIO_000300: 3.297781e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.913e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 1.303e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.174e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 6.301e0

DP
type: SiteQuality
SIO_000300: 3.296965e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

MQRankSum
type: SiteQuality
SIO_000300: -5.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

QD
type: SiteQuality
SIO_000300: 1.032e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.092e0

FS
type: SiteQuality
SIO_000300: 1.362e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 5.679999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.354e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.7e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

FS
type: SiteQuality
SIO_000300: 8.740900000000001e1

DP
type: SiteQuality
SIO_000300: 3.297164e6

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.297168e6

VQSLOD
type: SiteQuality
SIO_000300: -1.363e1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.698999999999999e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.78e-1

MQ
type: SiteQuality
SIO_000300: 5.707e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.7e-1

MQ
type: SiteQuality
SIO_000300: 5.724e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 8.6203e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.327e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

DP
type: SiteQuality
SIO_000300: 3.297162e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2505
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 7.6711e1

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.741e1

DP
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BaseQRankSum
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MQRankSum
type: SiteQuality
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VQSLOD
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SIO_000300: -1.094e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.97e-1

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 5.994125756758376e-5
allele num: 66732
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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InbreedingCoeff
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QD
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ClippingRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.074e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.066e0

VQSLOD
type: SiteQuality
SIO_000300: 9.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.64e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

DP
type: SiteQuality
SIO_000300: 3.296946e6

FS
type: SiteQuality
SIO_000300: 7.85e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e0

VQSLOD
type: SiteQuality
SIO_000300: 8.06e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.57e-1

FS
type: SiteQuality
SIO_000300: 4.579e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.01e0

VQSLOD
type: SiteQuality
SIO_000300: 7.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 3.296893e6

QD
type: SiteQuality
SIO_000300: 1.104e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

FS
type: SiteQuality
SIO_000300: 2.613e0

MQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

QD
type: SiteQuality
SIO_000300: 1.273e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 3.296875e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
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QD
type: SiteQuality
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VQSLOD
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SIO_000300: 4.72e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

East Asian
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num of homozygotes: 0

ClippingRankSum
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MQRankSum
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FS
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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QD
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 4.320027648176948e-4
allele num: 11574
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
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ReadPosRankSum
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
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allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8622
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 1.020408163265306e-4
allele num: 9800
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Latino
type: Population
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Other
type: Population
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allele num: 900
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MQ
type: SiteQuality
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InbreedingCoeff
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FS
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ClippingRankSum
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DP
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QD
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele num: 900
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997601918465228e-5
allele num: 66720
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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