7-18668945-ATT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18668945
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18668943
    reference: chr 7
allele count: 324
allele frequency: 2.415026833631485e-2
allele num: 13416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.656-16_656-15delTT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5293_665-5292delTT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.665-16_665-15delTT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.572-16_572-15delTT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5293_782-5292delTT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.656-16_656-15delTT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5293_656-5292delTT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5293_557-5292delTT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.656-16_656-15delTT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.656-16_656-15delTT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5293_800-5292delTT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5293_749-5292delTT
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 18586
  bin: 2.5e0
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 13376
  bin: 7.5e0
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 1.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
num of homozygotes: 1
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: ATT
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

7-18668945-ATTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18668945
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18668942
    reference: chr 7
allele count: 1
allele frequency: 7.453786523553965e-5
allele num: 13416
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13376
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11024
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3641
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20051
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 266
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6826
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4588
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 9.398496240601503e-4
  allele num: 1064
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
reference allele: ATTT
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ

7-18668958-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18668958
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18668957
    reference: chr 7
allele count: 1
allele frequency: 3.879577901924271e-5
allele num: 25776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.656-14delG
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5291delG
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.656-14delG
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5291delG
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5291delG
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5291delG
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.656-14delG
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.665-14delG
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5291delG
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5291delG
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.572-14delG
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.656-14delG
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: TG
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

7-18668959-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18668959
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18668959
    reference: chr 7
allele count: 50
allele frequency: 2.707678977580418e-3
allele num: 18466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5291G>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.656-14G>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5291G>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.656-14G>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.656-14G>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.656-14G>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5291G>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5291G>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5291G>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.572-14G>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.665-14G>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5291G>T
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22924
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20640
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS

7-18668961-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18668961
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18668961
    reference: chr 7
allele count: 1
allele frequency: 3.39881721161036e-5
allele num: 29422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5289C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5289C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5289C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.656-12C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5289C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.656-12C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.656-12C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.572-12C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5289C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.665-12C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.656-12C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5289C>T
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25953
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

7-18668970-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18668970
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18668970
    reference: chr 7
allele count: 4
allele frequency: 1.005227181342983e-4
allele num: 39792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.656-3C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5280C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.656-3C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.656-3C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5280C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.656-3C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.665-3C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.572-3C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5280C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5280C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5280C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5280C>T
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6726
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6274
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.665-3C>T
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

7-18668986-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18668986
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18668986
    reference: chr 7
allele count: 2
allele frequency: 3.618468664061369e-5
allele num: 55272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.669C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.669C>T
  hgvsp: ENST00000406451.4:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5264C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5264C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5264C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5264C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.585C>T
  hgvsp: ENST00000456174.2:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.669C>T
  hgvsp: ENST00000432645.2:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.678C>T
  hgvsp: ENST00000441542.2:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5264C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.669C>T
  hgvsp: ENST00000405010.3:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5264C>T
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6358
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn226Asn
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

7-18668995-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18668995
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18668995
    reference: chr 7
allele count: 1
allele frequency: 1.492492761410107e-5
allele num: 67002
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5255G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5255G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.678G>A
  hgvsp: ENST00000405010.3:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5255G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5255G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.678G>A
  hgvsp: ENST00000432645.2:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.594G>A
  hgvsp: ENST00000456174.2:c.594G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.687G>A
  hgvsp: ENST00000441542.2:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5255G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.678G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.678G>A
  hgvsp: ENST00000406451.4:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5255G>A
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val229Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

7-18668998-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18668998
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18668998
    reference: chr 7
allele count: 1
allele frequency: 1.352118770112767e-5
allele num: 73958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5252G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.597G>A
  hgvsp: ENST00000456174.2:c.597G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.681G>A
  hgvsp: ENST00000405010.3:c.681G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5252G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5252G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.681G>A
  hgvsp: ENST00000432645.2:c.681G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.690G>A
  hgvsp: ENST00000441542.2:c.690G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5252G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.681G>A
  hgvsp: ENST00000406451.4:c.681G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5252G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5252G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.681G>A
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg230Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

7-18669009-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18669009
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18669009
    reference: chr 7
allele count: 1
allele frequency: 1.096659574934749e-5
allele num: 91186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5241A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5241A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5241A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.692A>T
  hgvsp: ENSP00000384657.3:p.Lys231Ile
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.608A>T
  hgvsp: ENSP00000388568.2:p.Lys203Ile
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5241A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.692A>T
  hgvsp: ENSP00000410337.2:p.Lys231Ile
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5241A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.701A>T
  hgvsp: ENSP00000408617.2:p.Lys234Ile
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.692A>T
  hgvsp: ENSP00000384382.3:p.Lys231Ile
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5241A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.692A>T
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14032
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys234Ile
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

7-18669016-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18669016
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18669016
    reference: chr 7
allele count: 1
allele frequency: 1.005328239670252e-5
allele num: 99470
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.699A>G
  hgvsp: ENST00000406451.4:c.699A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.699A>G
  hgvsp: ENST00000405010.3:c.699A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5234A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5234A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.699A>G
  hgvsp: ENST00000432645.2:c.699A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.615A>G
  hgvsp: ENST00000456174.2:c.615A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5234A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5234A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.708A>G
  hgvsp: ENST00000441542.2:c.708A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.699A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5234A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5234A>G
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32471
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys236Lys
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

7-18669020-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18669020
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18669020
    reference: chr 7
allele count: 1
allele frequency: 9.731413001167769e-6
allele num: 102760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5230G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5230G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5230G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.619G>A
  hgvsp: ENSP00000388568.2:p.Ala207Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5230G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5230G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.712G>A
  hgvsp: ENSP00000408617.2:p.Ala238Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5230G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.703G>A
  hgvsp: ENSP00000384382.3:p.Ala235Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.703G>A
  hgvsp: ENSP00000410337.2:p.Ala235Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.703G>A
  hgvsp: ENSP00000384657.3:p.Ala235Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.703G>A
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala238Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

7-18669039-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18669039
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18669039
    reference: chr 7
allele count: 1
allele frequency: 8.925861791956013e-6
allele num: 112034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5211C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.722C>T
  hgvsp: ENSP00000384657.3:p.Pro241Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.731C>T
  hgvsp: ENSP00000408617.2:p.Pro244Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.722C>T
  hgvsp: ENSP00000410337.2:p.Pro241Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.722C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5211C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.722C>T
  hgvsp: ENSP00000384382.3:p.Pro241Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5211C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.638C>T
  hgvsp: ENSP00000388568.2:p.Pro213Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5211C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5211C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5211C>T
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro244Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

7-18669046-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18669046
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18669046
    reference: chr 7
allele count: 1
allele frequency: 8.75825465501235e-6
allele num: 114178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.729C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5204C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5204C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5204C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5204C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.729C>G
  hgvsp: ENST00000406451.4:c.729C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.738C>G
  hgvsp: ENST00000441542.2:c.738C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.645C>G
  hgvsp: ENST00000456174.2:c.645C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.729C>G
  hgvsp: ENST00000432645.2:c.729C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5204C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.729C>G
  hgvsp: ENST00000405010.3:c.729C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5204C>G
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu246Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS

7-18669063-ATGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18669063
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18669060
    reference: chr 7
allele count: 1
allele frequency: 8.508610714042611e-6
allele num: 117528
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.666_668delTGT
  hgvsp: ENSP00000388568.2:p.Val223del
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.750_752delTGT
  hgvsp: ENSP00000384657.3:p.Val251del
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.759_761delTGT
  hgvsp: ENSP00000408617.2:p.Val254del
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5183_557-5181delTGT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5183_749-5181delTGT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.750_752delTGT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5183_665-5181delTGT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5183_782-5181delTGT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.750_752delTGT
  hgvsp: ENSP00000410337.2:p.Val251del
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.750_752delTGT
  hgvsp: ENSP00000384382.3:p.Val251del
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5183_656-5181delTGT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5183_800-5181delTGT
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val254del
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: ATGT
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

7-18669065-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18669065
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18669065
    reference: chr 7
allele count: 2
allele frequency: 1.69920647057824e-5
allele num: 117702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5185G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.664G>A
  hgvsp: ENSP00000388568.2:p.Val222Ile
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.748G>A
  hgvsp: ENSP00000410337.2:p.Val250Ile
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.748G>A
  hgvsp: ENSP00000384382.3:p.Val250Ile
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5185G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.757G>A
  hgvsp: ENSP00000408617.2:p.Val253Ile
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5185G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.748G>A
  hgvsp: ENSP00000384657.3:p.Val250Ile
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.748G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5185G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5185G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5185G>A
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 36632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val253Ile
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

7-18669077-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18669077
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18669077
    reference: chr 7
allele count: 1
allele frequency: 8.411985396793351e-6
allele num: 118878
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.676T>C
  hgvsp: ENSP00000388568.2:p.Phe226Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.760T>C
  hgvsp: ENSP00000410337.2:p.Phe254Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5173T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5173T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.760T>C
  hgvsp: ENSP00000384382.3:p.Phe254Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.769T>C
  hgvsp: ENSP00000408617.2:p.Phe257Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.760T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.760T>C
  hgvsp: ENSP00000384657.3:p.Phe254Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5173T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5173T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5173T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5173T>C
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe257Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

7-18669085-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18669085
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18669085
    reference: chr 7
allele count: 1
allele frequency: 8.389965601141035e-6
allele num: 119190
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.777G>A
  hgvsp: ENST00000441542.2:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5165G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.768G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5165G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5165G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5165G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.684G>A
  hgvsp: ENST00000456174.2:c.684G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.768G>A
  hgvsp: ENST00000406451.4:c.768G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.768G>A
  hgvsp: ENST00000432645.2:c.768G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.768G>A
  hgvsp: ENST00000405010.3:c.768G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5165G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5165G>A
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys259Lys
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

7-18669113-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18669113
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18669113
    reference: chr 7
allele count: 1
allele frequency: 8.369741709770836e-6
allele num: 119478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.787+9G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5137G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.787+9G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5137G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5137G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.787+9G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5137G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5137G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.787+9G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5137G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.796+9G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.703+9G>A
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

7-18669124-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18669124
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18669124
    reference: chr 7
allele count: 1
allele frequency: 8.373806732540612e-6
allele num: 119420
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.787+20A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.796+20A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5126A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.787+20A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5126A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.703+20A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5126A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5126A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.787+20A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5126A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.787+20A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5126A>G
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

7-18669140-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18669140
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18669140
    reference: chr 7
allele count: 5
allele frequency: 4.204224404681824e-5
allele num: 118928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5110A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.787+36A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.787+36A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.703+36A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.787+36A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5110A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5110A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.796+36A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.787+36A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5110A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5110A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5110A>T
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5333
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31323
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

7-18669147-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18669147
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18669147
    reference: chr 7
allele count: 1
allele frequency: 8.451942256330504e-6
allele num: 118316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.787+43A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5103A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5103A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.796+43A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5103A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5103A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5103A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.787+43A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5103A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.787+43A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.703+43A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.787+43A>G
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

7-18669149-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18669149
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18669150
    reference: chr 7
allele count: 165
allele frequency: 1.544683480312307e-3
allele num: 106818
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.703+54dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.787+54dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.787+54dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.787+54dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.796+54dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5092dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5092dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5092dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5092dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.787+54dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5092dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5092dupA
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26333
  bin: 2.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 1.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11321
  bin: 2.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

7-18669149-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18669149
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18669148
    reference: chr 7
allele count: 187
allele frequency: 1.750641277687281e-3
allele num: 106818
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.787+54delA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.703+54delA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5092delA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5092delA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.796+54delA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.787+54delA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5092delA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5092delA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.787+54delA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5092delA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.787+54delA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5092delA
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 1.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 26333
  bin: 2.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11321
  bin: 2.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: GA
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum

7-18669152-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18669152
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18669152
    reference: chr 7
allele count: 1
allele frequency: 8.472135147499873e-6
allele num: 118034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-5098A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-5098A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-5098A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.796+48A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-5098A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.787+48A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.703+48A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-5098A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.787+48A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.787+48A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.787+48A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-5098A>T
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

7-18674200-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674200
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674200
    reference: chr 7
allele count: 1
allele frequency: 3.940731399747793e-5
allele num: 25376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.788-50A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.704-50A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-50A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-50A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.797-50A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-50A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.788-50A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.788-50A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-50A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-50A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.788-50A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-50A>G
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13101
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

7-18674204-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674204
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674204
    reference: chr 7
allele count: 1
allele frequency: 3.941663381947182e-5
allele num: 25370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-46A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.788-46A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.797-46A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-46A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-46A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-46A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.704-46A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-46A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.788-46A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.788-46A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-46A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.788-46A>G
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13130
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

7-18674206-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674206
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674206
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 25362
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.797-44G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.788-44G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.704-44G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-44G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.788-44G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.788-44G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-44G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-44G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-44G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.788-44G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-44G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-44G>A
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13241
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/7-18674213-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674213
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674213
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 25444
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.788-37C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-37C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-37C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-37C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-37C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.797-37C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-37C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.788-37C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-37C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.704-37C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.788-37C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.788-37C>A
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14261
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30696
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

7-18674213-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674213
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674213
    reference: chr 7
allele count: 1
allele frequency: 3.930199654142431e-5
allele num: 25444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-37C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-37C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.797-37C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.788-37C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.788-37C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-37C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-37C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-37C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.788-37C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-37C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.788-37C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.704-37C>T
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30696
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14261
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ

7-18674222-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674222
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674222
    reference: chr 7
allele count: 2
allele frequency: 7.717835918808367e-5
allele num: 25914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.788-28C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.788-28C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-28C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.797-28C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-28C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-28C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-28C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-28C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.704-28C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.788-28C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-28C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.788-28C>T
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28093
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17351
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD

7-18674227-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674227
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674227
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 26264
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.788-23T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.557-23T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.788-23T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.665-23T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.782-23T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.788-23T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.797-23T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.788-23T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.656-23T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.749-23T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.800-23T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.704-23T>C
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19687
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25966
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-18674266-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674266
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674266
    reference: chr 7
allele count: 1
allele frequency: 2.883838966432115e-5
allele num: 34676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.804C>T
  hgvsp: ENST00000432645.2:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.681C>T
  hgvsp: ENST00000401921.1:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.813C>T
  hgvsp: ENST00000441542.2:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.804C>T
  hgvsp: ENST00000406451.4:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.672C>T
  hgvsp: ENST00000428307.2:c.672C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.765C>T
  hgvsp: ENST00000406072.1:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.720C>T
  hgvsp: ENST00000456174.2:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.804C>T
  hgvsp: ENST00000405010.3:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.816C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.573C>T
  hgvsp: ENST00000524023.1:c.573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.804C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.798C>T
  hgvsp: ENST00000417496.2:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser271Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS

7-18674271-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674271
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674271
    reference: chr 7
allele count: 9
allele frequency: 2.493489222585471e-4
allele num: 36094
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.677C>G
  hgvsp: ENSP00000395655.2:p.Ser226Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.821C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.818C>G
  hgvsp: ENSP00000408617.2:p.Ser273Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.803C>G
  hgvsp: ENSP00000401669.2:p.Ser268Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.686C>G
  hgvsp: ENSP00000383912.1:p.Ser229Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.809C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.725C>G
  hgvsp: ENSP00000388568.2:p.Ser242Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.809C>G
  hgvsp: ENSP00000410337.2:p.Ser270Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.809C>G
  hgvsp: ENSP00000384382.3:p.Ser270Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.770C>G
  hgvsp: ENSP00000384017.1:p.Ser257Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.578C>G
  hgvsp: ENSP00000430036.1:p.Ser193Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.809C>G
  hgvsp: ENSP00000384657.3:p.Ser270Cys
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34639
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser273Cys
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

7-18674276-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674276
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674276
    reference: chr 7
allele count: 1
allele frequency: 2.640054913142193e-5
allele num: 37878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.814G>A
  hgvsp: ENSP00000410337.2:p.Gly272Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.583G>A
  hgvsp: ENSP00000430036.1:p.Gly195Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.814G>A
  hgvsp: ENSP00000384382.3:p.Gly272Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.808G>A
  hgvsp: ENSP00000401669.2:p.Gly270Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.823G>A
  hgvsp: ENSP00000408617.2:p.Gly275Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.682G>A
  hgvsp: ENSP00000395655.2:p.Gly228Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.826G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.814G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.814G>A
  hgvsp: ENSP00000384657.3:p.Gly272Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.691G>A
  hgvsp: ENSP00000383912.1:p.Gly231Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.775G>A
  hgvsp: ENSP00000384017.1:p.Gly259Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.730G>A
  hgvsp: ENSP00000388568.2:p.Gly244Ser
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly275Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-18674276-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674276
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674276
    reference: chr 7
allele count: 1
allele frequency: 2.640054913142193e-5
allele num: 37878
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.814G>C
  hgvsp: ENSP00000384657.3:p.Gly272Arg
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.775G>C
  hgvsp: ENSP00000384017.1:p.Gly259Arg
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.808G>C
  hgvsp: ENSP00000401669.2:p.Gly270Arg
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.730G>C
  hgvsp: ENSP00000388568.2:p.Gly244Arg
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.682G>C
  hgvsp: ENSP00000395655.2:p.Gly228Arg
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.814G>C
  hgvsp: ENSP00000410337.2:p.Gly272Arg
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.814G>C
  hgvsp: ENSP00000384382.3:p.Gly272Arg
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.583G>C
  hgvsp: ENSP00000430036.1:p.Gly195Arg
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.823G>C
  hgvsp: ENSP00000408617.2:p.Gly275Arg
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.826G>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.814G>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.691G>C
  hgvsp: ENSP00000383912.1:p.Gly231Arg
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly275Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

7-18674279-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674279
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674279
    reference: chr 7
allele count: 2
allele frequency: 5.152248956669586e-5
allele num: 38818
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.817T>G
  hgvsp: ENSP00000410337.2:p.Ser273Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.817T>G
  hgvsp: ENSP00000384657.3:p.Ser273Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.586T>G
  hgvsp: ENSP00000430036.1:p.Ser196Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.685T>G
  hgvsp: ENSP00000395655.2:p.Ser229Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.817T>G
  hgvsp: ENSP00000384382.3:p.Ser273Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.829T>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.694T>G
  hgvsp: ENSP00000383912.1:p.Ser232Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.778T>G
  hgvsp: ENSP00000384017.1:p.Ser260Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.817T>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.826T>G
  hgvsp: ENSP00000408617.2:p.Ser276Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.811T>G
  hgvsp: ENSP00000401669.2:p.Ser271Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.733T>G
  hgvsp: ENSP00000388568.2:p.Ser245Ala
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser276Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

7-18674282-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674282
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674282
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 39630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.820G>T
  hgvsp: ENSP00000410337.2:p.Gly274Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.781G>T
  hgvsp: ENSP00000384017.1:p.Gly261Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.829G>T
  hgvsp: ENSP00000408617.2:p.Gly277Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.820G>T
  hgvsp: ENSP00000384382.3:p.Gly274Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.589G>T
  hgvsp: ENSP00000430036.1:p.Gly197Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.832G>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.688G>T
  hgvsp: ENSP00000395655.2:p.Gly230Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.697G>T
  hgvsp: ENSP00000383912.1:p.Gly233Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.736G>T
  hgvsp: ENSP00000388568.2:p.Gly246Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.820G>T
  hgvsp: ENSP00000384657.3:p.Gly274Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.820G>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.814G>T
  hgvsp: ENSP00000401669.2:p.Gly272Cys
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34373
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly277Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ

7-18674289-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674289
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674289
    reference: chr 7
allele count: 2
allele frequency: 4.691972035846667e-5
allele num: 42626
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.704G>C
  hgvsp: ENSP00000383912.1:p.Ser235Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.827G>C
  hgvsp: ENSP00000410337.2:p.Ser276Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.596G>C
  hgvsp: ENSP00000430036.1:p.Ser199Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.836G>C
  hgvsp: ENSP00000408617.2:p.Ser279Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.695G>C
  hgvsp: ENSP00000395655.2:p.Ser232Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.827G>C
  hgvsp: ENSP00000384657.3:p.Ser276Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.743G>C
  hgvsp: ENSP00000388568.2:p.Ser248Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.839G>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.827G>C
  hgvsp: ENSP00000384382.3:p.Ser276Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.821G>C
  hgvsp: ENSP00000401669.2:p.Ser274Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.788G>C
  hgvsp: ENSP00000384017.1:p.Ser263Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.827G>C
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser279Thr
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

7-18674306-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674306
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674306
    reference: chr 7
allele count: 1
allele frequency: 2.02232648438764e-5
allele num: 49448
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.838C>G
  hgvsp: ENSP00000401669.2:p.Pro280Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.844C>G
  hgvsp: ENSP00000384657.3:p.Pro282Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.844C>G
  hgvsp: ENSP00000384382.3:p.Pro282Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.760C>G
  hgvsp: ENSP00000388568.2:p.Pro254Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.844C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.844C>G
  hgvsp: ENSP00000410337.2:p.Pro282Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.856C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.712C>G
  hgvsp: ENSP00000395655.2:p.Pro238Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.853C>G
  hgvsp: ENSP00000408617.2:p.Pro285Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.613C>G
  hgvsp: ENSP00000430036.1:p.Pro205Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.805C>G
  hgvsp: ENSP00000384017.1:p.Pro269Ala
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.721C>G
  hgvsp: ENSP00000383912.1:p.Pro241Ala
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro285Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

7-18674306-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674306
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674306
    reference: chr 7
allele count: 2
allele frequency: 4.044652968775279e-5
allele num: 49448
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.844C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.844C>T
  hgvsp: ENSP00000384382.3:p.Pro282Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.853C>T
  hgvsp: ENSP00000408617.2:p.Pro285Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.844C>T
  hgvsp: ENSP00000384657.3:p.Pro282Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.838C>T
  hgvsp: ENSP00000401669.2:p.Pro280Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.712C>T
  hgvsp: ENSP00000395655.2:p.Pro238Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.844C>T
  hgvsp: ENSP00000410337.2:p.Pro282Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.721C>T
  hgvsp: ENSP00000383912.1:p.Pro241Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.613C>T
  hgvsp: ENSP00000430036.1:p.Pro205Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.760C>T
  hgvsp: ENSP00000388568.2:p.Pro254Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.805C>T
  hgvsp: ENSP00000384017.1:p.Pro269Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.856C>T
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro285Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/7-18674307-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674307
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674307
    reference: chr 7
allele count: 10
allele frequency: 2.010696907548156e-4
allele num: 49734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.761C>A
  hgvsp: ENSP00000388568.2:p.Pro254Gln
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.722C>A
  hgvsp: ENSP00000383912.1:p.Pro241Gln
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.614C>A
  hgvsp: ENSP00000430036.1:p.Pro205Gln
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.857C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.845C>A
  hgvsp: ENSP00000384657.3:p.Pro282Gln
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.806C>A
  hgvsp: ENSP00000384017.1:p.Pro269Gln
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.713C>A
  hgvsp: ENSP00000395655.2:p.Pro238Gln
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.839C>A
  hgvsp: ENSP00000401669.2:p.Pro280Gln
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.845C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.845C>A
  hgvsp: ENSP00000410337.2:p.Pro282Gln
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.845C>A
  hgvsp: ENSP00000384382.3:p.Pro282Gln
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.854C>A
  hgvsp: ENSP00000408617.2:p.Pro285Gln
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10911
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31663
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro285Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

7-18674310-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674310
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674310
    reference: chr 7
allele count: 1
allele frequency: 1.984363217843394e-5
allele num: 50394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.842C>G
  hgvsp: ENSP00000401669.2:p.Thr281Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.809C>G
  hgvsp: ENSP00000384017.1:p.Thr270Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.716C>G
  hgvsp: ENSP00000395655.2:p.Thr239Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.848C>G
  hgvsp: ENSP00000384382.3:p.Thr283Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.848C>G
  hgvsp: ENSP00000410337.2:p.Thr283Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.725C>G
  hgvsp: ENSP00000383912.1:p.Thr242Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.848C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.857C>G
  hgvsp: ENSP00000408617.2:p.Thr286Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.617C>G
  hgvsp: ENSP00000430036.1:p.Thr206Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.848C>G
  hgvsp: ENSP00000384657.3:p.Thr283Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.764C>G
  hgvsp: ENSP00000388568.2:p.Thr255Ser
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.860C>G
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr286Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

7-18674346-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674346
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674346
    reference: chr 7
allele count: 1
allele frequency: 2.020038784744667e-5
allele num: 49504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.884C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.878C>T
  hgvsp: ENSP00000401669.2:p.Pro293Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.893C>T
  hgvsp: ENSP00000408617.2:p.Pro298Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.653C>T
  hgvsp: ENSP00000430036.1:p.Pro218Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.884C>T
  hgvsp: ENSP00000384382.3:p.Pro295Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.896C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.884C>T
  hgvsp: ENSP00000384657.3:p.Pro295Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.761C>T
  hgvsp: ENSP00000383912.1:p.Pro254Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.884C>T
  hgvsp: ENSP00000410337.2:p.Pro295Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.752C>T
  hgvsp: ENSP00000395655.2:p.Pro251Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.845C>T
  hgvsp: ENSP00000384017.1:p.Pro282Leu
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.800C>T
  hgvsp: ENSP00000388568.2:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29622
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro298Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

7-18674347-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674347
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674347
    reference: chr 7
allele count: 1
allele frequency: 2.022899219160901e-5
allele num: 49434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.753C>T
  hgvsp: ENST00000428307.2:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.885C>T
  hgvsp: ENST00000405010.3:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.654C>T
  hgvsp: ENST00000524023.1:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.897C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.885C>T
  hgvsp: ENST00000432645.2:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.879C>T
  hgvsp: ENST00000417496.2:c.879C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.894C>T
  hgvsp: ENST00000441542.2:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.885C>T
  hgvsp: ENST00000406451.4:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.885C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.846C>T
  hgvsp: ENST00000406072.1:c.846C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.762C>T
  hgvsp: ENST00000401921.1:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.801C>T
  hgvsp: ENST00000456174.2:c.801C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro298Pro
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

7-18674363-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674363
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674363
    reference: chr 7
allele count: 11
allele frequency: 2.535613849061823e-4
allele num: 43382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.769G>A
  hgvsp: ENSP00000395655.2:p.Glu257Lys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.670G>A
  hgvsp: ENSP00000430036.1:p.Glu224Lys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.895G>A
  hgvsp: ENSP00000401669.2:p.Glu299Lys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.901G>A
  hgvsp: ENSP00000384382.3:p.Glu301Lys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.817G>A
  hgvsp: ENSP00000388568.2:p.Glu273Lys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.913G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.901G>A
  hgvsp: ENSP00000384657.3:p.Glu301Lys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.901G>A
  hgvsp: ENSP00000410337.2:p.Glu301Lys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.778G>A
  hgvsp: ENSP00000383912.1:p.Glu260Lys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.901G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.862G>A
  hgvsp: ENSP00000384017.1:p.Glu288Lys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.910G>A
  hgvsp: ENSP00000408617.2:p.Glu304Lys
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9233
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13018
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24374
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu304Lys
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-18674368-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674368
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674368
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 40434
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.864+3A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.897+3A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.903+3A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.903+3A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.915+3A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.672+3A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.819+3A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.771+3A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.903+3A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.912+3A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.780+3A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.903+3A>G
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 16352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22638
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.912+3A>G
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/7-18674373-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674373
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674373
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 37180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.780+8C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.912+8C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.819+8C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.915+8C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.903+8C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.903+8C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.903+8C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.864+8C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.771+8C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.903+8C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.672+8C>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.897+8C>A
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: splice region
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 19954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20264
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.912+8C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

7-18674373-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674373
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674373
    reference: chr 7
allele count: 11
allele frequency: 2.958579881656805e-4
allele num: 37180
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.903+8C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.780+8C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.897+8C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.864+8C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.672+8C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.903+8C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.771+8C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.912+8C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.819+8C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.903+8C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.915+8C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.903+8C>G
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20264
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6982
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.912+8C>G
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

7-18674380-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674380
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674380
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 32970
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.864+15A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.903+15A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.903+15A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.903+15A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.819+15A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.912+15A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.903+15A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.672+15A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.771+15A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.915+15A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.780+15A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.897+15A>G
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17051
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24780
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ

7-18674400-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18674400
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18674400
    reference: chr 7
allele count: 2
allele frequency: 7.980209081477934e-5
allele num: 25062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.780+35T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.903+35T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.903+35T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.819+35T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.864+35T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.903+35T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.672+35T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.771+35T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.912+35T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.903+35T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.915+35T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.897+35T>C
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30992
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

7-18684252-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18684252
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18684252
    reference: chr 7
allele count: 1
allele frequency: 8.493578854386084e-6
allele num: 117736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.916-42G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.904-42G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.898-42G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.673-42G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.904-42G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.913-42G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.820-42G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.865-42G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.904-42G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.904-42G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.772-42G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.781-42G>A
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

7-18684255-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18684255
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18684255
    reference: chr 7
allele count: 7
allele frequency: 5.940459621847313e-5
allele num: 117836
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.781-39A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.904-39A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.916-39A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.904-39A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.673-39A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.898-39A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.904-39A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.772-39A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.913-39A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.865-39A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.820-39A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.904-39A>G
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9067
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14309
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-18684255-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18684255
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18684255
    reference: chr 7
allele count: 6
allele frequency: 5.091822533011983e-5
allele num: 117836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.673-39A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.913-39A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.904-39A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.904-39A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.904-39A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.781-39A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.916-39A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.772-39A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.820-39A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.865-39A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.904-39A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.898-39A>T
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9067
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14309
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

7-18684263-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18684263
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18684263
    reference: chr 7
allele count: 1
allele frequency: 8.471704506946798e-6
allele num: 118040
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.913-31G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.916-31G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.904-31G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.904-31G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.673-31G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.898-31G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.904-31G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.772-31G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.865-31G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.820-31G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.781-31G>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.904-31G>A
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4897
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

7-18684266-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18684266
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18684266
    reference: chr 7
allele count: 4
allele frequency: 3.384667456422407e-5
allele num: 118180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.781-28T>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.898-28T>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.904-28T>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.913-28T>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.904-28T>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.904-28T>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.916-28T>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.820-28T>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.772-28T>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.673-28T>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.865-28T>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.904-28T>A
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14905
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-18684268-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18684268
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18684268
    reference: chr 7
allele count: 1
allele frequency: 8.457804015765346e-6
allele num: 118234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.820-26T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.781-26T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.904-26T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.904-26T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.916-26T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.904-26T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.673-26T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.772-26T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.913-26T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.904-26T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.865-26T>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.898-26T>C
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

7-18684275-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18684275
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18684272
    reference: chr 7
allele count: 1
allele frequency: 8.435117079425063e-6
allele num: 118552
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.904-15_904-13delCTC
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.916-15_916-13delCTC
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.820-15_820-13delCTC
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.913-15_913-13delCTC
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.673-15_673-13delCTC
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.898-15_898-13delCTC
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.904-15_904-13delCTC
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.904-15_904-13delCTC
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.904-15_904-13delCTC
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.781-15_781-13delCTC
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.865-15_865-13delCTC
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.772-15_772-13delCTC
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: TCTC
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

7-18684276-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18684276
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18684276
    reference: chr 7
allele count: 3
allele frequency: 2.529468305762129e-5
allele num: 118602
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.673-18C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.781-18C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.916-18C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.904-18C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.904-18C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.904-18C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.865-18C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.772-18C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.904-18C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.913-18C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.898-18C>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.820-18C>G
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15435
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

7-18684278-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18684278
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18684278
    reference: chr 7
allele count: 1
allele frequency: 8.422329279385507e-6
allele num: 118732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.865-16C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.913-16C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.916-16C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.772-16C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.898-16C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.820-16C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.904-16C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.781-16C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.673-16C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.904-16C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.904-16C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.904-16C>T
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16156
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4914
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum

7-18684281-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18684281
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18684282
    reference: chr 7
allele count: 6
allele frequency: 5.050335005555368e-5
allele num: 118804
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.898-6dupT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.865-6dupT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.904-6dupT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.673-6dupT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.916-6dupT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.904-6dupT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.772-6dupT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.904-6dupT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.781-6dupT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.913-6dupT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.820-6dupT
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.904-6dupT
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 15666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9460
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD

7-18684288-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18684288
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18684289
    reference: chr 7
allele count: 23
allele frequency: 1.929238873324498e-4
allele num: 119218
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.904-4dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.904-4dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.673-4dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.820-4dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.904-4dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.916-4dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.904-4dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.898-4dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.772-4dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.781-4dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.865-4dupA
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.913-4dupA
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9400
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15902
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.913-4dupA
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

7-18684290-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18684290
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18684290
    reference: chr 7
allele count: 2
allele frequency: 1.67619303038938e-5
allele num: 119318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.904-4A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.865-4A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.904-4A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.904-4A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.913-4A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.904-4A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.772-4A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.673-4A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.820-4A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.898-4A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.916-4A>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.781-4A>T
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15985
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.913-4A>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-18684296-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18684296
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18684296
    reference: chr 7
allele count: 1
allele frequency: 8.365260745177427e-6
allele num: 119542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.900A>C
  hgvsp: ENSP00000401669.2:p.Gln300His
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.906A>C
  hgvsp: ENSP00000410337.2:p.Gln302His
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.906A>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.774A>C
  hgvsp: ENSP00000395655.2:p.Gln258His
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.918A>C
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.675A>C
  hgvsp: ENSP00000430036.1:p.Gln225His
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.867A>C
  hgvsp: ENSP00000384017.1:p.Gln289His
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.915A>C
  hgvsp: ENSP00000408617.2:p.Gln305His
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.783A>C
  hgvsp: ENSP00000383912.1:p.Gln261His
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.822A>C
  hgvsp: ENSP00000388568.2:p.Gln274His
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.906A>C
  hgvsp: ENSP00000384382.3:p.Gln302His
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.906A>C
  hgvsp: ENSP00000384657.3:p.Gln302His
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln305His
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

7-18684297-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18684297
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18684297
    reference: chr 7
allele count: 1
allele frequency: 8.364281173675934e-6
allele num: 119556
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.907A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.907A>G
  hgvsp: ENSP00000410337.2:p.Met303Val
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.907A>G
  hgvsp: ENSP00000384382.3:p.Met303Val
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.907A>G
  hgvsp: ENSP00000384657.3:p.Met303Val
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.775A>G
  hgvsp: ENSP00000395655.2:p.Met259Val
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.868A>G
  hgvsp: ENSP00000384017.1:p.Met290Val
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.919A>G
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.784A>G
  hgvsp: ENSP00000383912.1:p.Met262Val
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.916A>G
  hgvsp: ENSP00000408617.2:p.Met306Val
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.676A>G
  hgvsp: ENSP00000430036.1:p.Met226Val
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.823A>G
  hgvsp: ENSP00000388568.2:p.Met275Val
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.901A>G
  hgvsp: ENSP00000401669.2:p.Met301Val
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met306Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

7-18684303-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18684303
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18684303
    reference: chr 7
allele count: 1
allele frequency: 8.356732183446986e-6
allele num: 119664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.913T>A
  hgvsp: ENSP00000410337.2:p.Ser305Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.790T>A
  hgvsp: ENSP00000383912.1:p.Ser264Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.829T>A
  hgvsp: ENSP00000388568.2:p.Ser277Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.781T>A
  hgvsp: ENSP00000395655.2:p.Ser261Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.682T>A
  hgvsp: ENSP00000430036.1:p.Ser228Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.913T>A
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.874T>A
  hgvsp: ENSP00000384017.1:p.Ser292Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.907T>A
  hgvsp: ENSP00000401669.2:p.Ser303Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.913T>A
  hgvsp: ENSP00000384382.3:p.Ser305Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.913T>A
  hgvsp: ENSP00000384657.3:p.Ser305Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.922T>A
  hgvsp: ENSP00000408617.2:p.Ser308Thr
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.925T>A
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser308Thr
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

7-18684312-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18684312
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 18684312
    reference: chr 7
allele count: 2
allele frequency: 1.669476952870666e-5
allele num: 119798
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000388568
  ensembl transcript: ENST00000456174
  gene symbol: HDAC9
  hgvsc: ENST00000456174.2:c.838C>T
  hgvsp: ENSP00000388568.2:p.Arg280Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384017
  ensembl transcript: ENST00000406072
  gene symbol: HDAC9
  hgvsc: ENST00000406072.1:c.883C>T
  hgvsp: ENSP00000384017.1:p.Arg295Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000410337
  ensembl transcript: ENST00000432645
  gene symbol: HDAC9
  hgvsc: ENST00000432645.2:c.922C>T
  hgvsp: ENSP00000410337.2:p.Arg308Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000523867
  gene symbol: HDAC9
  hgvsc: ENST00000523867.1:n.922C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000408617
  ensembl transcript: ENST00000441542
  gene symbol: HDAC9
  hgvsc: ENST00000441542.2:c.931C>T
  hgvsp: ENSP00000408617.2:p.Arg311Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000401669
  ensembl transcript: ENST00000417496
  gene symbol: HDAC9
  hgvsc: ENST00000417496.2:c.916C>T
  hgvsp: ENSP00000401669.2:p.Arg306Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384382
  ensembl transcript: ENST00000405010
  gene symbol: HDAC9
  hgvsc: ENST00000405010.3:c.922C>T
  hgvsp: ENSP00000384382.3:p.Arg308Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000383912
  ensembl transcript: ENST00000401921
  gene symbol: HDAC9
  hgvsc: ENST00000401921.1:c.799C>T
  hgvsp: ENSP00000383912.1:p.Arg267Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000430036
  ensembl transcript: ENST00000524023
  gene symbol: HDAC9
  hgvsc: ENST00000524023.1:c.691C>T
  hgvsp: ENSP00000430036.1:p.Arg231Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048052
  ensembl transcript: ENST00000461159
  gene symbol: HDAC9
  hgvsc: ENST00000461159.2:n.934C>T
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000384657
  ensembl transcript: ENST00000406451
  gene symbol: HDAC9
  hgvsc: ENST00000406451.4:c.922C>T
  hgvsp: ENSP00000384657.3:p.Arg308Cys
  variant of: http://identifiers.org/hgnc/14065
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048052
  ensembl protein: ENSP00000395655
  ensembl transcript: ENST00000428307
  gene symbol: HDAC9
  hgvsc: ENST00000428307.2:c.790C>T
  hgvsp: ENSP00000395655.2:p.Arg264Cys
  variant of: http://identifiers.org/hgnc/14065
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg311Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C

GenotypeDepth
all individuals: 950
bin: 4.25e1
variant carriers: 42

GenotypeQuality
all individuals: 494
bin: 5.75e1
variant carriers: 19

GenotypeQuality
all individuals: 1363
bin: 1.25e1
variant carriers: 43

GenotypeQuality
all individuals: 176
bin: 9.25e1
variant carriers: 13

GenotypeQuality
all individuals: 20051
bin: 2.5e0
variant carriers: 19

GenotypeQuality
all individuals: 170
bin: 8.75e1
variant carriers: 13

GenotypeQuality
all individuals: 294
bin: 4.25e1
variant carriers: 14

GenotypeQuality
all individuals: 285
bin: 4.75e1
variant carriers: 12

GenotypeQuality
all individuals: 333
bin: 5.25e1
variant carriers: 18

GenotypeQuality
all individuals: 11024
bin: 7.5e0
variant carriers: 39

GenotypeQuality
all individuals: 489
bin: 3.25e1
variant carriers: 15

GenotypeQuality
all individuals: 240
bin: 7.75e1
variant carriers: 18

GenotypeQuality
all individuals: 624
bin: 1.75e1
variant carriers: 25

GenotypeQuality
all individuals: 557
bin: 3.75e1
variant carriers: 18

GenotypeQuality
all individuals: 1075
bin: 2.25e1
variant carriers: 41

GenotypeQuality
all individuals: 199
bin: 8.25e1
variant carriers: 8

GenotypeQuality
all individuals: 206
bin: 7.25e1
variant carriers: 15

GenotypeQuality
all individuals: 338
bin: 2.75e1
variant carriers: 23

GenotypeQuality
all individuals: 338
bin: 6.25e1
variant carriers: 18

GenotypeQuality
all individuals: 243
bin: 6.75e1
variant carriers: 10

GenotypeQuality
all individuals: 3641
bin: 9.75e1
variant carriers: 174

African
type: Population
allele count: 66
allele frequency: 6.203007518796992e-2
allele num: 1064
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 2.631578947368421e-2
allele num: 266
num of homozygotes: 0

South Asian
type: Population
allele count: 105
allele frequency: 1.538236155874597e-2
allele num: 6826
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 2.439024390243903e-2
allele num: 328
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 6.578947368421052e-2
allele num: 152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 5.208333333333333e-3
allele num: 192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 127
allele frequency: 2.768090671316478e-2
allele num: 4588
num of homozygotes: 1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.94e-1

DP
type: SiteQuality
SIO_000300: 5.14894e5

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

QD
type: SiteQuality
SIO_000300: 4.44e0

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.626e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

DP
type: SiteQuality
SIO_000300: 5.14894e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.626e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeDepth
all individuals: 850
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24017
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18634
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2163
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3063
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2221
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.408450704225352e-3
allele num: 710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.75e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.338e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.761e-1

FS
type: SiteQuality
SIO_000300: 9.188000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

DP
type: SiteQuality
SIO_000300: 6.47611e5

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

QD
type: SiteQuality
SIO_000300: 1.2e0

GenotypeDepth
all individuals: 339
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 343
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 15048
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1484
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 377
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 609
bin: 3.25e1
variant carriers: 10

GenotypeQuality
all individuals: 11491
bin: 2.5e0
variant carriers: 8

GenotypeQuality
all individuals: 252
bin: 4.25e1
variant carriers: 8

GenotypeQuality
all individuals: 2534
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19784
bin: 7.5e0
variant carriers: 6

GenotypeQuality
all individuals: 441
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2387
bin: 1.25e1
variant carriers: 7

GenotypeQuality
all individuals: 246
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 230
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 229
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1075
bin: 2.75e1
variant carriers: 8

GenotypeQuality
all individuals: 996
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 227
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 344
bin: 7.25e1
variant carriers: 2

Other
type: Population
allele count: 2
allele frequency: 9.803921568627451e-3
allele num: 204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.587155963302753e-3
allele num: 654
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 3.278122843340235e-3
allele num: 5796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 2.356373429084381e-3
allele num: 8912
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.047120418848168e-3
allele num: 1910
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.872659176029963e-3
allele num: 534
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.385964912280702e-3
allele num: 456
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.63e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.704e0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.101e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

DP
type: SiteQuality
SIO_000300: 6.75478e5

FS
type: SiteQuality
SIO_000300: 2.5102e1

GenotypeDepth
all individuals: 25
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2274
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2488
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2611
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20920
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16634
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4325
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 412
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 972
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.186521120075937e-4
allele num: 8428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1604
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.059e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.1e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

DP
type: SiteQuality
SIO_000300: 6.19802e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.34e-2

FS
type: SiteQuality
SIO_000300: 1.2138e1

VQSLOD
type: SiteQuality
SIO_000300: -9.775e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.38e-1

QD
type: SiteQuality
SIO_000300: 3.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.32e-1

GenotypeDepth
all individuals: 2600
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 56
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6519
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31486
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2991
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 446
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7911
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1750
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.938172303517783e-4
allele num: 20638
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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SIO_000300: 7.39795e5

InbreedingCoeff
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MQ
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ReadPosRankSum
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QD
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FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.328451604313673e-5
allele num: 30044
num of homozygotes: 0

Latino
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allele frequency: 3.280839895013123e-4
allele num: 3048
num of homozygotes: 0

Other
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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QD
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MQ
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.697017099088408e-5
allele num: 37078
num of homozygotes: 0

Latino
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num of homozygotes: 0

QD
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MQRankSum
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VQSLOD
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DP
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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SIO_000300: -2.388e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 8.750437521876094e-5
allele num: 11428
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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InbreedingCoeff
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QD
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VQSLOD
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MQ
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MQRankSum
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FS
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ReadPosRankSum
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DP
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7690
num of homozygotes: 0

African
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allele frequency: 1.337255950788981e-4
allele num: 7478
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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South Asian
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ReadPosRankSum
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BaseQRankSum
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DP
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Non-Finnish)
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num of homozygotes: 0

South Asian
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Latino
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European (Finnish)
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East Asian
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FS
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MQRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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East Asian
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African
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European (Non-Finnish)
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South Asian
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QD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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MQ
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VQSLOD
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FS
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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African
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South Asian
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Latino
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European (Non-Finnish)
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allele frequency: 1.59550705214117e-5
allele num: 62676
num of homozygotes: 0

Other
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MQ
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ReadPosRankSum
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FS
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DP
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QD
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VQSLOD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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num of homozygotes: 0

Latino
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Other
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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VQSLOD
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BaseQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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DP
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MQRankSum
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InbreedingCoeff
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QD
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FS
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.526857422053929e-5
allele num: 65494
num of homozygotes: 0

FS
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SIO_000300: 1.891e0

ReadPosRankSum
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QD
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MQ
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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SIO_000300: 2.02e0

MQRankSum
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SIO_000300: -2.09e-1

DP
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SIO_000300: 1.459941e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.050454517723141e-5
allele num: 65564
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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MQ
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SIO_000300: 5.85e1

MQRankSum
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ClippingRankSum
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Latino
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num of homozygotes: 0

Other
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European (Non-Finnish)
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allele num: 66026
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African
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European (Finnish)
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MQRankSum
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FS
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BaseQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQ
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele num: 16058
num of homozygotes: 0

Other
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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FS
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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ClippingRankSum
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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Other
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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MQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Latino
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allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.78e0

VQSLOD
type: SiteQuality
SIO_000300: -1.045e0

MQRankSum
type: SiteQuality
SIO_000300: -5.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.76e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 1.327e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

DP
type: SiteQuality
SIO_000300: 1.477807e6

GenotypeDepth
all individuals: 19
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2686
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 7.5e0
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GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
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GenotypeQuality
all individuals: 887
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
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GenotypeQuality
all individuals: 2121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1964
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6304
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.75e1
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GenotypeQuality
all individuals: 2003
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36167
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.064097510687972e-5
allele num: 65962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.211951795254069e-5
allele num: 16098
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

FS
type: SiteQuality
SIO_000300: 1.972e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.919e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.259e0

DP
type: SiteQuality
SIO_000300: 1.426612e6

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

QD
type: SiteQuality
SIO_000300: 1.092e1

GenotypeDepth
all individuals: 34
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 7.5e0
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GenotypeQuality
all individuals: 742
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3042
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1911
bin: 5.25e1
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GenotypeQuality
all individuals: 1966
bin: 7.25e1
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GenotypeQuality
all individuals: 28374
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GenotypeQuality
all individuals: 5703
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 9.25e1
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GenotypeQuality
all individuals: 755
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 455
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522672594938636e-5
allele num: 65674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16010
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.851e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.204e0

QD
type: SiteQuality
SIO_000300: 2.767e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

DP
type: SiteQuality
SIO_000300: 1.407383e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeDepth
all individuals: 35
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2840
bin: 4.25e1
variant carriers: 22

GenotypeQuality
all individuals: 2503
bin: 2.75e1
variant carriers: 22

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3021
bin: 2.25e1
variant carriers: 22

GenotypeQuality
all individuals: 810
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3584
bin: 4.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2305
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1190
bin: 7.5e0
variant carriers: 23

GenotypeQuality
all individuals: 1043
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1473
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3341
bin: 3.25e1
variant carriers: 22

GenotypeQuality
all individuals: 358
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variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 1.25e1
variant carriers: 25

GenotypeQuality
all individuals: 3188
bin: 2.5e0
variant carriers: 16

GenotypeQuality
all individuals: 1514
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1084
bin: 1.75e1
variant carriers: 28

GenotypeQuality
all individuals: 731
bin: 9.75e1
variant carriers: 30

GenotypeQuality
all individuals: 3927
bin: 3.75e1
variant carriers: 18

GenotypeQuality
all individuals: 4303
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 21767
bin: 6.25e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 81
allele frequency: 1.351892649709593e-3
allele num: 59916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.457725947521866e-3
allele num: 6174
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.137397634212921e-3
allele num: 8792
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.493428912783752e-3
allele num: 10044
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.531645569620253e-3
allele num: 790
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 1.919385796545105e-3
allele num: 13546
num of homozygotes: 0

East Asian
type: Population
allele count: 22
allele frequency: 2.911593435680254e-3
allele num: 7556
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.524e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-2

FS
type: SiteQuality
SIO_000300: 4.058e0

QD
type: SiteQuality
SIO_000300: 1.99e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 1.482483e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.4e-1

GenotypeDepth
all individuals: 2628
bin: 3.75e1
variant carriers: 16

GenotypeQuality
all individuals: 1084
bin: 1.75e1
variant carriers: 25

GenotypeQuality
all individuals: 1109
bin: 1.25e1
variant carriers: 26

GenotypeQuality
all individuals: 731
bin: 9.75e1
variant carriers: 32

GenotypeQuality
all individuals: 1514
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1043
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2305
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 3927
bin: 3.75e1
variant carriers: 17

GenotypeQuality
all individuals: 3584
bin: 4.75e1
variant carriers: 12

GenotypeQuality
all individuals: 3021
bin: 2.25e1
variant carriers: 21

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4303
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 358
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3188
bin: 2.5e0
variant carriers: 11

GenotypeQuality
all individuals: 3341
bin: 3.25e1
variant carriers: 21

GenotypeQuality
all individuals: 1190
bin: 7.5e0
variant carriers: 19

GenotypeQuality
all individuals: 21767
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1473
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2840
bin: 4.25e1
variant carriers: 22

GenotypeQuality
all individuals: 2503
bin: 2.75e1
variant carriers: 31

GenotypeQuality
all individuals: 810
bin: 8.25e1
variant carriers: 1

African
type: Population
allele count: 9
allele frequency: 1.023657870791629e-3
allele num: 8792
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.265822784810127e-3
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.323451561672843e-3
allele num: 7556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 121
allele frequency: 2.019493958208158e-3
allele num: 59916
num of homozygotes: 1

South Asian
type: Population
allele count: 23
allele frequency: 1.697918204636055e-3
allele num: 13546
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 1.692552767821585e-3
allele num: 10044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.718172983479105e-4
allele num: 6174
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.99e0

DP
type: SiteQuality
SIO_000300: 1.482483e6

VQSLOD
type: SiteQuality
SIO_000300: -6.524e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

FS
type: SiteQuality
SIO_000300: 4.058e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

GenotypeDepth
all individuals: 7039
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23402
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variant carriers: 0

GenotypeQuality
all individuals: 658
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variant carriers: 0

GenotypeQuality
all individuals: 356
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variant carriers: 0

GenotypeQuality
all individuals: 3169
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variant carriers: 0

GenotypeQuality
all individuals: 2512
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GenotypeQuality
all individuals: 2574
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GenotypeQuality
all individuals: 2264
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GenotypeQuality
all individuals: 6243
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GenotypeQuality
all individuals: 198
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GenotypeQuality
all individuals: 3754
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variant carriers: 0

GenotypeQuality
all individuals: 250
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GenotypeQuality
all individuals: 592
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GenotypeQuality
all individuals: 1545
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3625
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variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1980
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.042752867570386e-4
allele num: 9590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15974
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.794e1

MQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

DP
type: SiteQuality
SIO_000300: 1.455227e6

FS
type: SiteQuality
SIO_000300: 1.652e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.917e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.81e0

QD
type: SiteQuality
SIO_000300: 8.9e0

GenotypeDepth
all individuals: 502
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
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GenotypeQuality
all individuals: 270
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GenotypeQuality
all individuals: 252
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GenotypeQuality
all individuals: 5347
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GenotypeQuality
all individuals: 4399
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GenotypeQuality
all individuals: 224
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GenotypeQuality
all individuals: 680
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GenotypeQuality
all individuals: 22013
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GenotypeQuality
all individuals: 6405
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variant carriers: 0

GenotypeQuality
all individuals: 613
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GenotypeQuality
all individuals: 6569
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variant carriers: 0

GenotypeQuality
all individuals: 664
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variant carriers: 0

GenotypeQuality
all individuals: 654
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GenotypeQuality
all individuals: 259
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GenotypeQuality
all individuals: 2309
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GenotypeQuality
all individuals: 724
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GenotypeQuality
all individuals: 374
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GenotypeQuality
all individuals: 4450
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.294665976178146e-4
allele num: 7724
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.192e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.24e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.045e0

MQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

DP
type: SiteQuality
SIO_000300: 6.91578e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.062e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 661
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
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variant carriers: 0

GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 4223
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GenotypeQuality
all individuals: 603
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variant carriers: 0

GenotypeQuality
all individuals: 5259
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GenotypeQuality
all individuals: 604
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GenotypeQuality
all individuals: 6546
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variant carriers: 0

GenotypeQuality
all individuals: 427
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GenotypeQuality
all individuals: 5516
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GenotypeQuality
all individuals: 310
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GenotypeQuality
all individuals: 23216
bin: 7.5e0
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GenotypeQuality
all individuals: 715
bin: 3.25e1
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GenotypeQuality
all individuals: 2856
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GenotypeQuality
all individuals: 688
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GenotypeQuality
all individuals: 240
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GenotypeQuality
all individuals: 126
bin: 8.75e1
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GenotypeQuality
all individuals: 609
bin: 3.75e1
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GenotypeQuality
all individuals: 4447
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 5.74052812858783e-4
allele num: 1742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.407e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 6.95633e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.11e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.231e0

QD
type: SiteQuality
SIO_000300: 3.207e1

GenotypeDepth
all individuals: 511
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23673
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6098
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 690
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4447
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3088
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7730
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.049e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

QD
type: SiteQuality
SIO_000300: 9.09e0

DP
type: SiteQuality
SIO_000300: 6.98427e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.05e-2

GenotypeDepth
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3359
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3714
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.13028e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.01e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.228e1

GenotypeDepth
all individuals: 379
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24832
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3714
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.579272477693891e-5
allele num: 11656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1744
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.01e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.228e1

DP
type: SiteQuality
SIO_000300: 7.13028e5

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 501
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24382
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4498
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
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variant carriers: 0

GenotypeQuality
all individuals: 1650
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4446
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.68123739071957e-4
allele num: 11896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7810
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.23e-1

DP
type: SiteQuality
SIO_000300: 7.40641e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.46e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.096e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.13e0

QD
type: SiteQuality
SIO_000300: 1.484e1

GenotypeDepth
all individuals: 219
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 2.5e0
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GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4936
bin: 6.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4445
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7882
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.14e-2

DP
type: SiteQuality
SIO_000300: 7.57082e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.052e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeDepth
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bin: 9.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1408
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.18962645729241e-4
allele num: 8406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e0

QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.63e-2

MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: -1.43e-1

MQ
type: SiteQuality
SIO_000300: 5.921e1

DP
type: SiteQuality
SIO_000300: 9.0655e5

FS
type: SiteQuality
SIO_000300: 5.655e0

GenotypeDepth
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bin: 2.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
all individuals: 1910
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GenotypeQuality
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GenotypeQuality
all individuals: 335
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.25e1
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4454
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 244
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 5.079580088046055e-4
allele num: 17718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2340
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.52e-2

FS
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SIO_000300: 0.0e0

MQRankSum
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QD
type: SiteQuality
SIO_000300: 2.825e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.18302e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeDepth
all individuals: 99
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variant carriers: 0

GenotypeDepth
all individuals: 219
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GenotypeDepth
all individuals: 957
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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Other
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QD
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VQSLOD
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InbreedingCoeff
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MQ
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MQRankSum
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BaseQRankSum
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DP
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FS
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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African
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Other
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European (Finnish)
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FS
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DP
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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East Asian
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Other
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Latino
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European (Non-Finnish)
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ClippingRankSum
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FS
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MQ
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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BaseQRankSum
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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VQSLOD
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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BaseQRankSum
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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VQSLOD
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MQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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Other
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African
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Latino
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
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QD
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FS
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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East Asian
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Other
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South Asian
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ClippingRankSum
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ReadPosRankSum
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DP
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.939179075080753e-4
allele num: 25386
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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allele frequency: 0.0e0
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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InbreedingCoeff
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QD
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MQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 3584
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.88168620448723e-5
allele num: 25762
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -1.278e0

DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQ
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SIO_000300: 5.972e1

QD
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MQRankSum
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9350
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.945395723191036e-5
allele num: 25346
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
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ReadPosRankSum
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MQRankSum
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QD
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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DP
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 9340
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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East Asian
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allele count: 1
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allele num: 3304
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

African
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allele frequency: 2.399232245681382e-3
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Latino
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allele count: 1
allele frequency: 3.63901018922853e-4
allele num: 2748
num of homozygotes: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

South Asian
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Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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QD
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BaseQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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Other
type: Population
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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ClippingRankSum
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MQ
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MQRankSum
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FS
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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Latino
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Other
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East Asian
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African
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South Asian
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: 3.03e-2

DP
type: SiteQuality
SIO_000300: 8.26825e5

QD
type: SiteQuality
SIO_000300: 1.396e1

FS
type: SiteQuality
SIO_000300: 7.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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bin: 9.75e1
variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 238
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4456
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 720
bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 3.007107709130672e-3
allele num: 3658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2424
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

VQSLOD
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QD
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SIO_000300: 1.396e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 7.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.03e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 8.26825e5

GenotypeDepth
all individuals: 501
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25397
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
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SIO_000300: -1.221e0

InbreedingCoeff
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SIO_000300: -4.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.914e-1

DP
type: SiteQuality
SIO_000300: 7.8221e5

QD
type: SiteQuality
SIO_000300: 8.720000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 219
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 96
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GenotypeQuality
all individuals: 118
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.570033410434336e-4
allele num: 7782
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.463e1

DP
type: SiteQuality
SIO_000300: 6.82415e5

ReadPosRankSum
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SIO_000300: 1.34e0

MQRankSum
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SIO_000300: 6.19e-1

BaseQRankSum
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SIO_000300: -8.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.202e0

VQSLOD
type: SiteQuality
SIO_000300: -4.872e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.15e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 755
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variant carriers: 0

GenotypeQuality
all individuals: 1340
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3031
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.026272577996716e-4
allele num: 9744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65594
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

MQRankSum
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SIO_000300: 9.14e-1

VQSLOD
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 1.238e1

DP
type: SiteQuality
SIO_000300: 1.95796e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.49e-1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7020
bin: 6.75e1
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GenotypeQuality
all individuals: 12099
bin: 9.75e1
variant carriers: 7

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.763357432551578e-4
allele num: 11342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.617538620920808e-5
allele num: 65638
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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FS
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.379e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.922594142259414e-4
allele num: 15296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

ClippingRankSum
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DP
type: SiteQuality
SIO_000300: 1.96486e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

MQRankSum
type: SiteQuality
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FS
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7154
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.025851456709069e-4
allele num: 9748
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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ClippingRankSum
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MQ
type: SiteQuality
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65754
num of homozygotes: 0

East Asian
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allele frequency: 3.569728700618753e-4
allele num: 8404
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.813678829543451e-5
allele num: 11346
num of homozygotes: 0

African
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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FS
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MQRankSum
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InbreedingCoeff
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DP
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MQ
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VQSLOD
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QD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -2.35e-1

ReadPosRankSum
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SIO_000300: 5.01e-1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.52012647452268e-5
allele num: 65784
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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MQ
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SIO_000300: 5.956e1

ReadPosRankSum
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BaseQRankSum
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FS
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DP
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MQRankSum
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QD
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ClippingRankSum
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SIO_000300: -1.456e0

InbreedingCoeff
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SIO_000300: 3.1e-3

VQSLOD
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SIO_000300: 9.419999999999999e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.362942224484602e-5
allele num: 15716
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65874
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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SIO_000300: 1.284e1

ReadPosRankSum
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SIO_000300: -6.24e-1

MQ
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BaseQRankSum
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DP
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SIO_000300: 2.006784e6

VQSLOD
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ClippingRankSum
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SIO_000300: -7.11e-1

MQRankSum
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SIO_000300: -2.112e0

FS
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SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 9.0e-4

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 147
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variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.071882039729674e-4
allele num: 9766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 8.070000000000001e-1

FS
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BaseQRankSum
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QD
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MQRankSum
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DP
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ClippingRankSum
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SIO_000300: 4.11e-1

InbreedingCoeff
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SIO_000300: 7.1e-3

VQSLOD
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SIO_000300: 6.79e-1

MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.516254245511887e-5
allele num: 65952
num of homozygotes: 0

South Asian
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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QD
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VQSLOD
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BaseQRankSum
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MQ
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DP
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MQRankSum
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SIO_000300: 3.8e-1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

African
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allele frequency: 1.023751023751024e-4
allele num: 9768
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15888
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.579202667879339e-5
allele num: 65970
num of homozygotes: 0

Other
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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DP
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FS
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SIO_000300: 2.704e1

MQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 73
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variant carriers: 0

Latino
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allele count: 7
allele frequency: 6.165228113440197e-4
allele num: 11354
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023122570083896e-4
allele num: 9774
num of homozygotes: 0

European (Non-Finnish)
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allele count: 15
allele frequency: 2.269151639840252e-4
allele num: 66104
num of homozygotes: 0

South Asian
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East Asian
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Other
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European (Finnish)
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MQ
type: SiteQuality
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QD
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4068
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-5
allele num: 66140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 5.921e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.027594e6

QD
type: SiteQuality
SIO_000300: 1.304e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 4.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.179e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.97e-1

GenotypeDepth
all individuals: 1929
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1104
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 656
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1026
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4921
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 263
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25824
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7583
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3042
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4074
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12091
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.186239620403321e-4
allele num: 8430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

VQSLOD
type: SiteQuality
SIO_000300: 4.61e-1

FS
type: SiteQuality
SIO_000300: 1.241e0

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-2

DP
type: SiteQuality
SIO_000300: 2.033324e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.026e1

GenotypeDepth
all individuals: 156
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 441
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4922
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25809
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4072
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3157
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12091
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7586
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3044
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510026576467746e-5
allele num: 66224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.276e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

QD
type: SiteQuality
SIO_000300: 1.354e1

VQSLOD
type: SiteQuality
SIO_000300: 8.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.524e0

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.033655e6

GenotypeDepth
all individuals: 1393
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 656
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 263
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4081
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3039
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7613
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3163
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12090
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25907
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.184553423359394e-4
allele num: 8442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66268
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.843e0

MQRankSum
type: SiteQuality
SIO_000300: -8.59e-1

FS
type: SiteQuality
SIO_000300: 3.603e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.202e0

QD
type: SiteQuality
SIO_000300: 1.366e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.52e-1

DP
type: SiteQuality
SIO_000300: 2.035573e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeDepth
all individuals: 656
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1104
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 441
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26020
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7603
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4077
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12092
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 98
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3033
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507886245061673e-5
allele num: 66318
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.079766536964981e-5
allele num: 16448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0