9-127064368-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127064368
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127064368
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 40070
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.192+35G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.90+35G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.90+35G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.192+35G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.90+35G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.90+35G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.192+35G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.165+35G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.90+35G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.144+35G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.90+35G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.90+35G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.90+35G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.90+35G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.90+35G>A
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24510
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

9-127064371-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127064371
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127064371
    reference: chr 9
allele count: 1
allele frequency: 2.549849558876026e-5
allele num: 39218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.90+38T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.90+38T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.90+38T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.192+38T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.90+38T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.90+38T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.90+38T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.90+38T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.90+38T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.90+38T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.144+38T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.192+38T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.192+38T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.165+38T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.90+38T>C
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8958
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

9-127064385-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127064385
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127064385
    reference: chr 9
allele count: 1815
allele frequency: 5.902439024390244e-2
allele num: 30750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.90+52G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.90+52G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.90+52G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.192+52G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.192+52G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.144+52G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.90+52G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.90+52G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.90+52G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.90+52G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.165+52G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.192+52G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.90+52G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.90+52G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.90+52G>A
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 1.75e1
  variant carriers: 327
genotype depth: GenotypeDepth
  all individuals: 5951
  bin: 1.25e1
  variant carriers: 568
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15687
  bin: 2.5e0
  variant carriers: 293
genotype depth: GenotypeDepth
  all individuals: 26647
  bin: 7.5e0
  variant carriers: 1600
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 3.25e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
num of homozygotes: 76
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

9-127074740-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074740
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074740
    reference: chr 9
allele count: 1
allele frequency: 1.070778455937467e-5
allele num: 93390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.91-48T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8998T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.91-48T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.193-48T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.91-48T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.145-48T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.193-48T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.91-48T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.193-48T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.91-48T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.91-48T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.91-48T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.91-48T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.91-48T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.166-48T>C
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7056
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

9-127074741-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074741
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074741
    reference: chr 9
allele count: 1
allele frequency: 1.070526270714683e-5
allele num: 93412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.91-47C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.145-47C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8997C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.91-47C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.166-47C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.91-47C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.91-47C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.91-47C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.91-47C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.91-47C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.193-47C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.193-47C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.91-47C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.193-47C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.91-47C>G
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12990
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12447
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

9-127074762-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074762
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074762
    reference: chr 9
allele count: 17
allele frequency: 1.756670180007027e-4
allele num: 96774
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.193-26C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.91-26C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.145-26C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.91-26C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.91-26C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.166-26C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.91-26C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.193-26C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.91-26C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.91-26C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8976C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.91-26C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.193-26C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.91-26C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.91-26C>T
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16864
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11203
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19863
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

9-127074763-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074763
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074763
    reference: chr 9
allele count: 5
allele frequency: 5.118755118755119e-5
allele num: 97680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8975G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.145-25G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.91-25G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.91-25G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.91-25G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.91-25G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.91-25G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.166-25G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.91-25G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.91-25G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.91-25G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.193-25G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.193-25G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.193-25G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.91-25G>A
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21577
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15648
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS

9-127074774-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074774
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074774
    reference: chr 9
allele count: 2
allele frequency: 1.95576069312159e-5
allele num: 102262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.91-14G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.145-14G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.91-14G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8964G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.91-14G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.91-14G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.91-14G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.193-14G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.91-14G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.91-14G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.91-14G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.91-14G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.193-14G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.166-14G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.193-14G>A
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28252
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

9-127074776-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074776
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074776
    reference: chr 9
allele count: 12
allele frequency: 1.162632976146647e-4
allele num: 103214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.91-12C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.193-12C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.91-12C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8962C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.91-12C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.91-12C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.145-12C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.91-12C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.91-12C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.91-12C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.166-12C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.91-12C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.91-12C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.193-12C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.193-12C>G
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8253
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9928
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29451
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS

http://identifiers.org/exac.variant/9-127074779-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074779
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074779
    reference: chr 9
allele count: 2
allele frequency: 1.901610664232605e-5
allele num: 105174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8959C>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.193-9C>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.91-9C>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.91-9C>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.91-9C>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.166-9C>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.91-9C>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.91-9C>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.91-9C>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.91-9C>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.145-9C>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.91-9C>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.193-9C>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.193-9C>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.91-9C>A
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8562
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

9-127074780-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074780
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074780
    reference: chr 9
allele count: 4
allele frequency: 3.785369546701997e-5
allele num: 105670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.91-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.91-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.193-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.166-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.91-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.91-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.91-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.91-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.145-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.91-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.193-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8958C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.91-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.91-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.193-8C>T
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31830
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.193-8C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

9-127074781-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074781
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074781
    reference: chr 9
allele count: 46
allele frequency: 4.314468476242286e-4
allele num: 106618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.91-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.145-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.91-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.91-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.91-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.91-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.91-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.91-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.193-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.193-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.91-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.166-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8957G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.91-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.193-7G>A
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7493
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32758
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
hgvs: c.193-7G>A
num of homozygotes: 1
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

9-127074781-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074781
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074781
    reference: chr 9
allele count: 7
allele frequency: 6.565495507325217e-5
allele num: 106618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.145-7G>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8957G>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.193-7G>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.91-7G>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.91-7G>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.193-7G>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.91-7G>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.91-7G>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.91-7G>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.91-7G>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.91-7G>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.91-7G>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.193-7G>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.166-7G>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.91-7G>T
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7615
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.193-7G>T
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS

9-127074783-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074783
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074782
    reference: chr 9
allele count: 3779
allele frequency: 3.461129835873388e-2
allele num: 109184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.91-3delC
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.91-3delC
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.145-3delC
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.91-3delC
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.91-3delC
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.91-3delC
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.91-3delC
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.91-3delC
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.193-3delC
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8953delC
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.91-3delC
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.166-3delC
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.193-3delC
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.193-3delC
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.91-3delC
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5904
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.25e1
  variant carriers: 190
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 356
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 3.25e1
  variant carriers: 577
genotype depth: GenotypeDepth
  all individuals: 8437
  bin: 2.75e1
  variant carriers: 774
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 76
genotype quality: GenotypeQuality
hgvs: c.193-3delC
num of homozygotes: 100
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TC
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

9-127074797-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074797
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074797
    reference: chr 9
allele count: 1
allele frequency: 8.693686644758577e-6
allele num: 115026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8941A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.100A>G
  hgvsp: ENSP00000362698.1:p.Asn34Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.202A>G
  hgvsp: ENSP00000362702.3:p.Asn68Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.100A>G
  hgvsp: ENSP00000389517.1:p.Asn34Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.100A>G
  hgvsp: ENSP00000441426.1:p.Asn34Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.100A>G
  hgvsp: ENSP00000403087.1:p.Asn34Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.100A>G
  hgvsp: ENSP00000319734.5:p.Asn34Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.100A>G
  hgvsp: ENSP00000403414.1:p.Asn34Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.100A>G
  hgvsp: ENSP00000362705.1:p.Asn34Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.100A>G
  hgvsp: ENSP00000442636.1:p.Asn34Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.100A>G
  hgvsp: ENSP00000411401.1:p.Asn34Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.154A>G
  hgvsp: ENSP00000441469.1:p.Asn52Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.202A>G
  hgvsp: ENSP00000399847.1:p.Asn68Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.202A>G
  hgvsp: ENSP00000377749.2:p.Asn68Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.175A>G
  hgvsp: ENSP00000439651.1:p.Asn59Asp
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn68Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

9-127074800-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074800
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074800
    reference: chr 9
allele count: 1
allele frequency: 8.636622735045688e-6
allele num: 115786
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.205A>G
  hgvsp: ENSP00000399847.1:p.Thr69Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.205A>G
  hgvsp: ENSP00000377749.2:p.Thr69Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8938A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.103A>G
  hgvsp: ENSP00000442636.1:p.Thr35Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.103A>G
  hgvsp: ENSP00000362698.1:p.Thr35Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.103A>G
  hgvsp: ENSP00000411401.1:p.Thr35Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.103A>G
  hgvsp: ENSP00000441426.1:p.Thr35Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.103A>G
  hgvsp: ENSP00000319734.5:p.Thr35Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.178A>G
  hgvsp: ENSP00000439651.1:p.Thr60Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.157A>G
  hgvsp: ENSP00000441469.1:p.Thr53Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.103A>G
  hgvsp: ENSP00000403414.1:p.Thr35Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.103A>G
  hgvsp: ENSP00000362705.1:p.Thr35Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.103A>G
  hgvsp: ENSP00000403087.1:p.Thr35Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.103A>G
  hgvsp: ENSP00000389517.1:p.Thr35Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.205A>G
  hgvsp: ENSP00000362702.3:p.Thr69Ala
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr69Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

9-127074801-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074801
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074801
    reference: chr 9
allele count: 5
allele frequency: 4.311459860308701e-5
allele num: 115970
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.104C>T
  hgvsp: ENSP00000389517.1:p.Thr35Met
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.104C>T
  hgvsp: ENSP00000362705.1:p.Thr35Met
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.158C>T
  hgvsp: ENSP00000441469.1:p.Thr53Met
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.206C>T
  hgvsp: ENSP00000399847.1:p.Thr69Met
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.104C>T
  hgvsp: ENSP00000362698.1:p.Thr35Met
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.104C>T
  hgvsp: ENSP00000403087.1:p.Thr35Met
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.179C>T
  hgvsp: ENSP00000439651.1:p.Thr60Met
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.104C>T
  hgvsp: ENSP00000441426.1:p.Thr35Met
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.104C>T
  hgvsp: ENSP00000403414.1:p.Thr35Met
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.206C>T
  hgvsp: ENSP00000377749.2:p.Thr69Met
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8937C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.104C>T
  hgvsp: ENSP00000442636.1:p.Thr35Met
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.104C>T
  hgvsp: ENSP00000319734.5:p.Thr35Met
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.206C>T
  hgvsp: ENSP00000362702.3:p.Thr69Met
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.104C>T
  hgvsp: ENSP00000411401.1:p.Thr35Met
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr69Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

9-127074802-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074802
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074802
    reference: chr 9
allele count: 593
allele frequency: 5.095727494586326e-3
allele num: 116372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.105G>A
  hgvsp: ENST00000545174.1:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8936G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.105G>A
  hgvsp: ENST00000373603.1:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.159G>A
  hgvsp: ENST00000540326.1:c.159G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.105G>A
  hgvsp: ENST00000444973.1:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.105G>A
  hgvsp: ENST00000546191.1:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.105G>A
  hgvsp: ENST00000447379.1:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.207G>A
  hgvsp: ENST00000394199.2:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.105G>A
  hgvsp: ENST00000422297.1:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.105G>A
  hgvsp: ENST00000373596.1:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.207G>A
  hgvsp: ENST00000423785.1:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.207G>A
  hgvsp: ENST00000373600.3:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.180G>A
  hgvsp: ENST00000539416.1:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.105G>A
  hgvsp: ENST00000425237.1:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.105G>A
  hgvsp: ENST00000320246.5:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38927
  bin: 2.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 3.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
hgvs: p.Thr69Thr
num of homozygotes: 14
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

9-127074802-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074802
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074802
    reference: chr 9
allele count: 1
allele frequency: 8.593132368611007e-6
allele num: 116372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.105G>C
  hgvsp: ENST00000447379.1:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.105G>C
  hgvsp: ENST00000546191.1:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.105G>C
  hgvsp: ENST00000425237.1:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.159G>C
  hgvsp: ENST00000540326.1:c.159G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.207G>C
  hgvsp: ENST00000423785.1:c.207G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.207G>C
  hgvsp: ENST00000394199.2:c.207G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.105G>C
  hgvsp: ENST00000545174.1:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.207G>C
  hgvsp: ENST00000373600.3:c.207G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.105G>C
  hgvsp: ENST00000422297.1:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.105G>C
  hgvsp: ENST00000373603.1:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.180G>C
  hgvsp: ENST00000539416.1:c.180G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.105G>C
  hgvsp: ENST00000444973.1:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.105G>C
  hgvsp: ENST00000320246.5:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.105G>C
  hgvsp: ENST00000373596.1:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8936G>C
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr69Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

9-127074812-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074812
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074812
    reference: chr 9
allele count: 1
allele frequency: 8.479318941102651e-6
allele num: 117934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.115C>T
  hgvsp: ENSP00000389517.1:p.Arg39Cys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.115C>T
  hgvsp: ENSP00000403414.1:p.Arg39Cys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.115C>T
  hgvsp: ENSP00000319734.5:p.Arg39Cys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.217C>T
  hgvsp: ENSP00000362702.3:p.Arg73Cys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.115C>T
  hgvsp: ENSP00000362705.1:p.Arg39Cys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.190C>T
  hgvsp: ENSP00000439651.1:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.115C>T
  hgvsp: ENSP00000403087.1:p.Arg39Cys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.169C>T
  hgvsp: ENSP00000441469.1:p.Arg57Cys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.115C>T
  hgvsp: ENSP00000441426.1:p.Arg39Cys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.115C>T
  hgvsp: ENSP00000411401.1:p.Arg39Cys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.217C>T
  hgvsp: ENSP00000377749.2:p.Arg73Cys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.115C>T
  hgvsp: ENSP00000442636.1:p.Arg39Cys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.115C>T
  hgvsp: ENSP00000362698.1:p.Arg39Cys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.217C>T
  hgvsp: ENSP00000399847.1:p.Arg73Cys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8926C>T
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg73Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

9-127074819-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074819
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074819
    reference: chr 9
allele count: 1
allele frequency: 8.39278220730172e-6
allele num: 119150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.224C>T
  hgvsp: ENSP00000377749.2:p.Ser75Leu
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.176C>T
  hgvsp: ENSP00000441469.1:p.Ser59Leu
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.197C>T
  hgvsp: ENSP00000439651.1:p.Ser66Leu
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.122C>T
  hgvsp: ENSP00000319734.5:p.Ser41Leu
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.122C>T
  hgvsp: ENSP00000362698.1:p.Ser41Leu
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.122C>T
  hgvsp: ENSP00000403414.1:p.Ser41Leu
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.122C>T
  hgvsp: ENSP00000442636.1:p.Ser41Leu
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.122C>T
  hgvsp: ENSP00000362705.1:p.Ser41Leu
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.122C>T
  hgvsp: ENSP00000441426.1:p.Ser41Leu
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.122C>T
  hgvsp: ENSP00000403087.1:p.Ser41Leu
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8919C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.122C>T
  hgvsp: ENSP00000389517.1:p.Ser41Leu
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.224C>T
  hgvsp: ENSP00000362702.3:p.Ser75Leu
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.122C>T
  hgvsp: ENSP00000411401.1:p.Ser41Leu
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.224C>T
  hgvsp: ENSP00000399847.1:p.Ser75Leu
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser75Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

9-127074820-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074820
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074820
    reference: chr 9
allele count: 1
allele frequency: 8.377314233056882e-6
allele num: 119370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8918G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.225G>A
  hgvsp: ENST00000373600.3:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.123G>A
  hgvsp: ENST00000320246.5:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.123G>A
  hgvsp: ENST00000373596.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.225G>A
  hgvsp: ENST00000394199.2:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.123G>A
  hgvsp: ENST00000546191.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.123G>A
  hgvsp: ENST00000373603.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.177G>A
  hgvsp: ENST00000540326.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.123G>A
  hgvsp: ENST00000422297.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.123G>A
  hgvsp: ENST00000447379.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.123G>A
  hgvsp: ENST00000425237.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.123G>A
  hgvsp: ENST00000545174.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.123G>A
  hgvsp: ENST00000444973.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.225G>A
  hgvsp: ENST00000423785.1:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.198G>A
  hgvsp: ENST00000539416.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser75Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

9-127074825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074825
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074825
    reference: chr 9
allele count: 3
allele frequency: 2.504884524823406e-5
allele num: 119766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.128C>T
  hgvsp: ENSP00000442636.1:p.Ala43Val
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.128C>T
  hgvsp: ENSP00000319734.5:p.Ala43Val
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.128C>T
  hgvsp: ENSP00000441426.1:p.Ala43Val
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.203C>T
  hgvsp: ENSP00000439651.1:p.Ala68Val
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.128C>T
  hgvsp: ENSP00000403414.1:p.Ala43Val
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.128C>T
  hgvsp: ENSP00000411401.1:p.Ala43Val
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.230C>T
  hgvsp: ENSP00000399847.1:p.Ala77Val
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.182C>T
  hgvsp: ENSP00000441469.1:p.Ala61Val
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8913C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.230C>T
  hgvsp: ENSP00000377749.2:p.Ala77Val
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.128C>T
  hgvsp: ENSP00000362705.1:p.Ala43Val
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.128C>T
  hgvsp: ENSP00000389517.1:p.Ala43Val
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.128C>T
  hgvsp: ENSP00000362698.1:p.Ala43Val
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.230C>T
  hgvsp: ENSP00000362702.3:p.Ala77Val
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.128C>T
  hgvsp: ENSP00000403087.1:p.Ala43Val
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40347
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala77Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

9-127074826-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074826
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074826
    reference: chr 9
allele count: 1
allele frequency: 8.338753523123364e-6
allele num: 119922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.129G>A
  hgvsp: ENST00000444973.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.129G>A
  hgvsp: ENST00000546191.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.204G>A
  hgvsp: ENST00000539416.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.183G>A
  hgvsp: ENST00000540326.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.129G>A
  hgvsp: ENST00000373603.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.129G>A
  hgvsp: ENST00000320246.5:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.129G>A
  hgvsp: ENST00000425237.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.129G>A
  hgvsp: ENST00000545174.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.129G>A
  hgvsp: ENST00000447379.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.129G>A
  hgvsp: ENST00000373596.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.129G>A
  hgvsp: ENST00000422297.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.231G>A
  hgvsp: ENST00000423785.1:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.231G>A
  hgvsp: ENST00000373600.3:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.231G>A
  hgvsp: ENST00000394199.2:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8912G>A
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala77Ala
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

9-127074838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074838
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074838
    reference: chr 9
allele count: 8
allele frequency: 6.638122738889442e-5
allele num: 120516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.243C>T
  hgvsp: ENST00000394199.2:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.141C>T
  hgvsp: ENST00000422297.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.141C>T
  hgvsp: ENST00000545174.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.216C>T
  hgvsp: ENST00000539416.1:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.243C>T
  hgvsp: ENST00000373600.3:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.141C>T
  hgvsp: ENST00000425237.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.195C>T
  hgvsp: ENST00000540326.1:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.141C>T
  hgvsp: ENST00000373603.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.141C>T
  hgvsp: ENST00000546191.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.141C>T
  hgvsp: ENST00000447379.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.243C>T
  hgvsp: ENST00000423785.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.141C>T
  hgvsp: ENST00000373596.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.141C>T
  hgvsp: ENST00000444973.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8900C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.141C>T
  hgvsp: ENST00000320246.5:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile81Ile
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

9-127074839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074839
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074839
    reference: chr 9
allele count: 8
allele frequency: 6.63558998689471e-5
allele num: 120562
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.142G>A
  hgvsp: ENSP00000362705.1:p.Glu48Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.142G>A
  hgvsp: ENSP00000362698.1:p.Glu48Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.244G>A
  hgvsp: ENSP00000399847.1:p.Glu82Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.244G>A
  hgvsp: ENSP00000377749.2:p.Glu82Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.142G>A
  hgvsp: ENSP00000389517.1:p.Glu48Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.142G>A
  hgvsp: ENSP00000403087.1:p.Glu48Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.142G>A
  hgvsp: ENSP00000411401.1:p.Glu48Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.142G>A
  hgvsp: ENSP00000403414.1:p.Glu48Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.196G>A
  hgvsp: ENSP00000441469.1:p.Glu66Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.142G>A
  hgvsp: ENSP00000441426.1:p.Glu48Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.142G>A
  hgvsp: ENSP00000442636.1:p.Glu48Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.142G>A
  hgvsp: ENSP00000319734.5:p.Glu48Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.244G>A
  hgvsp: ENSP00000362702.3:p.Glu82Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8899G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.217G>A
  hgvsp: ENSP00000439651.1:p.Glu73Lys
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu82Lys
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

9-127074844-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074844
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074844
    reference: chr 9
allele count: 4
allele frequency: 3.313782019418762e-5
allele num: 120708
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.147G>C
  hgvsp: ENSP00000389517.1:p.Lys49Asn
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.147G>C
  hgvsp: ENSP00000403414.1:p.Lys49Asn
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.222G>C
  hgvsp: ENSP00000439651.1:p.Lys74Asn
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.249G>C
  hgvsp: ENSP00000399847.1:p.Lys83Asn
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.201G>C
  hgvsp: ENSP00000441469.1:p.Lys67Asn
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.147G>C
  hgvsp: ENSP00000442636.1:p.Lys49Asn
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.147G>C
  hgvsp: ENSP00000362698.1:p.Lys49Asn
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.147G>C
  hgvsp: ENSP00000319734.5:p.Lys49Asn
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.147G>C
  hgvsp: ENSP00000441426.1:p.Lys49Asn
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.249G>C
  hgvsp: ENSP00000362702.3:p.Lys83Asn
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.147G>C
  hgvsp: ENSP00000411401.1:p.Lys49Asn
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.249G>C
  hgvsp: ENSP00000377749.2:p.Lys83Asn
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.147G>C
  hgvsp: ENSP00000362705.1:p.Lys49Asn
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8894G>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.147G>C
  hgvsp: ENSP00000403087.1:p.Lys49Asn
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Lys83Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD

9-127074851-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074851
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074851
    reference: chr 9
allele count: 1
allele frequency: 8.27787159365584e-6
allele num: 120804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.256G>A
  hgvsp: ENSP00000377749.2:p.Gly86Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.154G>A
  hgvsp: ENSP00000442636.1:p.Gly52Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.256G>A
  hgvsp: ENSP00000399847.1:p.Gly86Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.154G>A
  hgvsp: ENSP00000362705.1:p.Gly52Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8887G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.154G>A
  hgvsp: ENSP00000411401.1:p.Gly52Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.154G>A
  hgvsp: ENSP00000362698.1:p.Gly52Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.154G>A
  hgvsp: ENSP00000403414.1:p.Gly52Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.154G>A
  hgvsp: ENSP00000441426.1:p.Gly52Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.229G>A
  hgvsp: ENSP00000439651.1:p.Gly77Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.154G>A
  hgvsp: ENSP00000403087.1:p.Gly52Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.154G>A
  hgvsp: ENSP00000389517.1:p.Gly52Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.256G>A
  hgvsp: ENSP00000362702.3:p.Gly86Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.208G>A
  hgvsp: ENSP00000441469.1:p.Gly70Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.154G>A
  hgvsp: ENSP00000319734.5:p.Gly52Ser
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly86Ser
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-127074854-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074854
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074854
    reference: chr 9
allele count: 2
allele frequency: 1.655355073663301e-5
allele num: 120820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.157C>T
  hgvsp: ENSP00000411401.1:p.Arg53Ter
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.157C>T
  hgvsp: ENSP00000319734.5:p.Arg53Ter
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.259C>T
  hgvsp: ENSP00000362702.3:p.Arg87Ter
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.157C>T
  hgvsp: ENSP00000362705.1:p.Arg53Ter
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.157C>T
  hgvsp: ENSP00000403414.1:p.Arg53Ter
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.157C>T
  hgvsp: ENSP00000362698.1:p.Arg53Ter
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.259C>T
  hgvsp: ENSP00000377749.2:p.Arg87Ter
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8884C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.157C>T
  hgvsp: ENSP00000389517.1:p.Arg53Ter
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.157C>T
  hgvsp: ENSP00000403087.1:p.Arg53Ter
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.157C>T
  hgvsp: ENSP00000441426.1:p.Arg53Ter
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.259C>T
  hgvsp: ENSP00000399847.1:p.Arg87Ter
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.157C>T
  hgvsp: ENSP00000442636.1:p.Arg53Ter
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.211C>T
  hgvsp: ENSP00000441469.1:p.Arg71Ter
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.232C>T
  hgvsp: ENSP00000439651.1:p.Arg78Ter
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg87Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

9-127074868-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074868
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074868
    reference: chr 9
allele count: 1
allele frequency: 8.272803984182399e-6
allele num: 120878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.273C>T
  hgvsp: ENST00000423785.1:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.171C>T
  hgvsp: ENST00000373596.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.273C>T
  hgvsp: ENST00000394199.2:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.171C>T
  hgvsp: ENST00000425237.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.171C>T
  hgvsp: ENST00000447379.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.171C>T
  hgvsp: ENST00000422297.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8870C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.171C>T
  hgvsp: ENST00000444973.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.171C>T
  hgvsp: ENST00000320246.5:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.171C>T
  hgvsp: ENST00000546191.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.171C>T
  hgvsp: ENST00000373603.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.273C>T
  hgvsp: ENST00000373600.3:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.171C>T
  hgvsp: ENST00000545174.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.246C>T
  hgvsp: ENST00000539416.1:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.225C>T
  hgvsp: ENST00000540326.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15660
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser91Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

9-127074869-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074869
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074869
    reference: chr 9
allele count: 2
allele frequency: 1.654451301225948e-5
allele num: 120886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.172G>A
  hgvsp: ENSP00000389517.1:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.172G>A
  hgvsp: ENSP00000442636.1:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.226G>A
  hgvsp: ENSP00000441469.1:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.274G>A
  hgvsp: ENSP00000399847.1:p.Glu92Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.172G>A
  hgvsp: ENSP00000403414.1:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.172G>A
  hgvsp: ENSP00000319734.5:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.172G>A
  hgvsp: ENSP00000362705.1:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.274G>A
  hgvsp: ENSP00000377749.2:p.Glu92Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.172G>A
  hgvsp: ENSP00000403087.1:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.172G>A
  hgvsp: ENSP00000411401.1:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.172G>A
  hgvsp: ENSP00000441426.1:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8869G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.172G>A
  hgvsp: ENSP00000362698.1:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.247G>A
  hgvsp: ENSP00000439651.1:p.Glu83Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.274G>A
  hgvsp: ENSP00000362702.3:p.Glu92Lys
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu92Lys
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-127074870-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074870
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074870
    reference: chr 9
allele count: 2
allele frequency: 1.654533421575116e-5
allele num: 120880
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.173A>C
  hgvsp: ENSP00000389517.1:p.Glu58Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.173A>C
  hgvsp: ENSP00000411401.1:p.Glu58Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.173A>C
  hgvsp: ENSP00000403414.1:p.Glu58Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.275A>C
  hgvsp: ENSP00000362702.3:p.Glu92Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8868A>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.173A>C
  hgvsp: ENSP00000403087.1:p.Glu58Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.173A>C
  hgvsp: ENSP00000362698.1:p.Glu58Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.173A>C
  hgvsp: ENSP00000441426.1:p.Glu58Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.173A>C
  hgvsp: ENSP00000442636.1:p.Glu58Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.173A>C
  hgvsp: ENSP00000362705.1:p.Glu58Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.248A>C
  hgvsp: ENSP00000439651.1:p.Glu83Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.227A>C
  hgvsp: ENSP00000441469.1:p.Glu76Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.275A>C
  hgvsp: ENSP00000399847.1:p.Glu92Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.275A>C
  hgvsp: ENSP00000377749.2:p.Glu92Ala
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.173A>C
  hgvsp: ENSP00000319734.5:p.Glu58Ala
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu92Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

9-127074900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074900
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074900
    reference: chr 9
allele count: 1
allele frequency: 8.299030673217368e-6
allele num: 120496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.305G>A
  hgvsp: ENSP00000399847.1:p.Arg102Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.305G>A
  hgvsp: ENSP00000377749.2:p.Arg102Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.278G>A
  hgvsp: ENSP00000439651.1:p.Arg93Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.305G>A
  hgvsp: ENSP00000362702.3:p.Arg102Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.203G>A
  hgvsp: ENSP00000442636.1:p.Arg68Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.203G>A
  hgvsp: ENSP00000389517.1:p.Arg68Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.203G>A
  hgvsp: ENSP00000362698.1:p.Arg68Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.257G>A
  hgvsp: ENSP00000441469.1:p.Arg86Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.203G>A
  hgvsp: ENSP00000441426.1:p.Arg68Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.203G>A
  hgvsp: ENSP00000403414.1:p.Arg68Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8838G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.203G>A
  hgvsp: ENSP00000403087.1:p.Arg68Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.203G>A
  hgvsp: ENSP00000411401.1:p.Arg68Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.203G>A
  hgvsp: ENSP00000319734.5:p.Arg68Lys
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.203G>A
  hgvsp: ENSP00000362705.1:p.Arg68Lys
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg102Lys
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

9-127074905-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074905
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074905
    reference: chr 9
allele count: 1
allele frequency: 8.307993951780402e-6
allele num: 120366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.208A>T
  hgvsp: ENSP00000411401.1:p.Thr70Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.208A>T
  hgvsp: ENSP00000389517.1:p.Thr70Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.283A>T
  hgvsp: ENSP00000439651.1:p.Thr95Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.208A>T
  hgvsp: ENSP00000403087.1:p.Thr70Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.208A>T
  hgvsp: ENSP00000441426.1:p.Thr70Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.310A>T
  hgvsp: ENSP00000362702.3:p.Thr104Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.208A>T
  hgvsp: ENSP00000319734.5:p.Thr70Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.208A>T
  hgvsp: ENSP00000362698.1:p.Thr70Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8833A>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.208A>T
  hgvsp: ENSP00000442636.1:p.Thr70Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.310A>T
  hgvsp: ENSP00000399847.1:p.Thr104Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.208A>T
  hgvsp: ENSP00000362705.1:p.Thr70Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.262A>T
  hgvsp: ENSP00000441469.1:p.Thr88Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.208A>T
  hgvsp: ENSP00000403414.1:p.Thr70Ser
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.310A>T
  hgvsp: ENSP00000377749.2:p.Thr104Ser
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr104Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

9-127074925-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074925
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074925
    reference: chr 9
allele count: 3
allele frequency: 2.513404825737265e-5
allele num: 119360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.282G>T
  hgvsp: ENST00000540326.1:c.282G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.330G>T
  hgvsp: ENST00000373600.3:c.330G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.228G>T
  hgvsp: ENST00000546191.1:c.228G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.228G>T
  hgvsp: ENST00000444973.1:c.228G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.228G>T
  hgvsp: ENST00000422297.1:c.228G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8813G>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.228G>T
  hgvsp: ENST00000425237.1:c.228G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.228G>T
  hgvsp: ENST00000373603.1:c.228G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.303G>T
  hgvsp: ENST00000539416.1:c.303G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.228G>T
  hgvsp: ENST00000447379.1:c.228G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.228G>T
  hgvsp: ENST00000545174.1:c.228G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.330G>T
  hgvsp: ENST00000394199.2:c.330G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.228G>T
  hgvsp: ENST00000373596.1:c.228G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.228G>T
  hgvsp: ENST00000320246.5:c.228G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.330G>T
  hgvsp: ENST00000423785.1:c.330G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15274
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val110Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

9-127074944-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074944
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074944
    reference: chr 9
allele count: 1
allele frequency: 8.498053945646446e-6
allele num: 117674
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.285+16G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.231+16G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.333+16G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.333+16G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.231+16G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8794G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.333+16G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.231+16G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.231+16G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.231+16G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.231+16G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.306+16G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.231+16G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.231+16G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.231+16G>A
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5889
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

9-127074947-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074947
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074947
    reference: chr 9
allele count: 1
allele frequency: 8.511362669163334e-6
allele num: 117490
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.231+19G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.333+19G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.231+19G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.285+19G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.231+19G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.333+19G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8791G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.333+19G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.231+19G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.231+19G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.231+19G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.231+19G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.231+19G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.306+19G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.231+19G>A
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32393
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

9-127074947-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074947
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074947
    reference: chr 9
allele count: 1
allele frequency: 8.511362669163334e-6
allele num: 117490
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.231+19G>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.231+19G>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8791G>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.285+19G>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.333+19G>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.231+19G>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.231+19G>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.231+19G>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.333+19G>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.333+19G>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.231+19G>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.231+19G>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.306+19G>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.231+19G>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.231+19G>C
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32393
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

9-127074958-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074958
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074958
    reference: chr 9
allele count: 2
allele frequency: 1.714089818306479e-5
allele num: 116680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.333+30G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.231+30G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.231+30G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.231+30G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.231+30G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.231+30G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.333+30G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.285+30G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.333+30G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.306+30G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.231+30G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8780G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.231+30G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.231+30G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.231+30G>A
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10031
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7606
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

9-127074960-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074960
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074960
    reference: chr 9
allele count: 1
allele frequency: 8.581628449814637e-6
allele num: 116528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.231+32A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.231+32A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.231+32A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8778A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.333+32A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.306+32A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.333+32A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.231+32A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.285+32A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.231+32A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.231+32A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.231+32A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.333+32A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.231+32A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.231+32A>G
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

9-127074964-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074964
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074964
    reference: chr 9
allele count: 3
allele frequency: 2.592374961114376e-5
allele num: 115724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.333+36C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.231+36C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.231+36C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.231+36C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.285+36C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.231+36C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.231+36C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8774C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.231+36C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.231+36C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.231+36C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.333+36C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.306+36C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.231+36C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.333+36C>G
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22953
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

9-127074965-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074965
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074965
    reference: chr 9
allele count: 585
allele frequency: 5.060290988357006e-3
allele num: 115606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.306+37G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.231+37G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8773G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.231+37G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.285+37G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.231+37G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.231+37G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.231+37G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.231+37G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.231+37G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.231+37G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.333+37G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.333+37G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.231+37G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.333+37G>A
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 9593
  bin: 2.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10503
  bin: 1.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
num of homozygotes: 13
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

9-127074969-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074969
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074969
    reference: chr 9
allele count: 1
allele frequency: 8.678144959733408e-6
allele num: 115232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.231+41G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.231+41G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.231+41G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.231+41G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.231+41G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.306+41G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.231+41G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8769G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.285+41G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.333+41G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.231+41G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.333+41G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.231+41G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.333+41G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.231+41G>A
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8208
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

9-127074978-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127074978
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127074978
    reference: chr 9
allele count: 1
allele frequency: 8.798324798958279e-6
allele num: 113658
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.333+50T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.231+50T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-8760T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.285+50T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.333+50T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.333+50T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.231+50T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.231+50T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.231+50T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.306+50T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.231+50T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.231+50T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.231+50T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.231+50T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.231+50T>C
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21289
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

9-127076161-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127076161
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127076161
    reference: chr 9
allele count: 1
allele frequency: 8.325424180361989e-6
allele num: 120114
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.232-41A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.334-41A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.232-41A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.232-41A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.232-41A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.232-41A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.232-41A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.334-41A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.286-41A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-7577A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.334-41A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.232-41A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.232-41A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.232-41A>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.307-41A>G
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19934
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21354
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

9-127076178-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127076178
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127076178
    reference: chr 9
allele count: 2
allele frequency: 1.659585767392459e-5
allele num: 120512
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.232-24T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.232-24T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.232-24T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.232-24T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.232-24T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.232-24T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.232-24T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.334-24T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.232-24T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-7560T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.286-24T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.307-24T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.334-24T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.232-24T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.334-24T>C
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6911
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

9-127076180-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127076180
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127076180
    reference: chr 9
allele count: 2
allele frequency: 1.659035105182826e-5
allele num: 120552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.232-22T>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.232-22T>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.232-22T>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.286-22T>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.307-22T>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.334-22T>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.232-22T>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.334-22T>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.232-22T>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.232-22T>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-7558T>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.232-22T>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.232-22T>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.232-22T>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.334-22T>A
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

9-127076194-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127076194
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127076194
    reference: chr 9
allele count: 6
allele frequency: 4.965407659968883e-5
allele num: 120836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.232-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-7544C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.334-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.232-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.232-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.334-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.286-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.232-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.232-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.232-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.334-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.232-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.232-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.307-8C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.232-8C>T
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7060
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.334-8C>T
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

9-127076195-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127076195
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127076195
    reference: chr 9
allele count: 3
allele frequency: 2.481759070829404e-5
allele num: 120882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.232-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.232-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.334-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.232-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.334-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.232-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.232-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.232-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.307-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.232-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.232-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-7543G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.334-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.232-7G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.286-7G>A
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.334-7G>A
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

9-127076219-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127076219
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127076219
    reference: chr 9
allele count: 10
allele frequency: 8.265829062654984e-5
allele num: 120980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.249C>T
  hgvsp: ENST00000425237.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.249C>T
  hgvsp: ENST00000545174.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.351C>T
  hgvsp: ENST00000394199.2:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.351C>T
  hgvsp: ENST00000423785.1:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.249C>T
  hgvsp: ENST00000447379.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.351C>T
  hgvsp: ENST00000373600.3:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.324C>T
  hgvsp: ENST00000539416.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.249C>T
  hgvsp: ENST00000373596.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.249C>T
  hgvsp: ENST00000546191.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.249C>T
  hgvsp: ENST00000373603.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.303C>T
  hgvsp: ENST00000540326.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.249C>T
  hgvsp: ENST00000422297.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.249C>T
  hgvsp: ENST00000444973.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-7519C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.249C>T
  hgvsp: ENST00000320246.5:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Asp117Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

9-127076220-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127076220
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127076220
    reference: chr 9
allele count: 61
allele frequency: 5.042989417989418e-4
allele num: 120960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.304G>A
  hgvsp: ENSP00000441469.1:p.Ala102Thr
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.250G>A
  hgvsp: ENSP00000441426.1:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.250G>A
  hgvsp: ENSP00000362698.1:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.250G>A
  hgvsp: ENSP00000403087.1:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.250G>A
  hgvsp: ENSP00000362705.1:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.250G>A
  hgvsp: ENSP00000319734.5:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.352G>A
  hgvsp: ENSP00000399847.1:p.Ala118Thr
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.352G>A
  hgvsp: ENSP00000362702.3:p.Ala118Thr
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.352G>A
  hgvsp: ENSP00000377749.2:p.Ala118Thr
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.250G>A
  hgvsp: ENSP00000442636.1:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.250G>A
  hgvsp: ENSP00000403414.1:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.325G>A
  hgvsp: ENSP00000439651.1:p.Ala109Thr
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.250G>A
  hgvsp: ENSP00000389517.1:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.250G>A
  hgvsp: ENSP00000411401.1:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-7518G>A
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22641
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
hgvs: p.Ala118Thr
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

6-31948557-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31948557
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31948557
    reference: chr 6
allele count: 14
allele frequency: 1.544299329332863e-4
allele num: 90656
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000490822
  gene symbol: STK19
  hgvsc: ENST00000490822.1:n.390T>C
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000454870
  ensembl transcript: ENST00000519179
  gene symbol: STK19
  hgvsc: ENST00000519179.1:c.*381T>C
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000469907
  gene symbol: STK19
  hgvsc: ENST00000469907.1:n.799T>C
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000473983
  gene symbol: STK19
  hgvsc: ENST00000473983.1:n.1667T>C
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000491861
  gene symbol: STK19
  hgvsc: ENST00000491861.1:n.664T>C
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000492583
  gene symbol: STK19
  hgvsc: ENST00000492583.1:n.1223T>C
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000364482
  ensembl transcript: ENST00000375333
  gene symbol: STK19
  hgvsc: ENST00000375333.2:c.1040T>C
  hgvsp: ENSP00000364482.2:p.Ile347Thr
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000466132
  gene symbol: STK19
  hgvsc: ENST00000466132.1:n.1425T>C
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000364480
  ensembl transcript: ENST00000375331
  gene symbol: STK19
  hgvsc: ENST00000375331.2:c.1028T>C
  hgvsp: ENSP00000364480.2:p.Ile343Thr
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000418866
  ensembl transcript: ENST00000483801
  gene symbol: STK19
  hgvsc: ENST00000483801.1:c.*381T>C
  variant of: http://identifiers.org/hgnc/11398
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16893
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10417
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5365
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile347Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

6-31948566-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31948566
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31948566
    reference: chr 6
allele count: 2
allele frequency: 2.4118469924268e-5
allele num: 82924
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000492583
  gene symbol: STK19
  hgvsc: ENST00000492583.1:n.1232A>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000364482
  ensembl transcript: ENST00000375333
  gene symbol: STK19
  hgvsc: ENST00000375333.2:c.1049A>G
  hgvsp: ENSP00000364482.2:p.Gln350Arg
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000490822
  gene symbol: STK19
  hgvsc: ENST00000490822.1:n.399A>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000454870
  ensembl transcript: ENST00000519179
  gene symbol: STK19
  hgvsc: ENST00000519179.1:c.*390A>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000364480
  ensembl transcript: ENST00000375331
  gene symbol: STK19
  hgvsc: ENST00000375331.2:c.1037A>G
  hgvsp: ENSP00000364480.2:p.Gln346Arg
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000473983
  gene symbol: STK19
  hgvsc: ENST00000473983.1:n.1676A>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000418866
  ensembl transcript: ENST00000483801
  gene symbol: STK19
  hgvsc: ENST00000483801.1:c.*390A>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000469907
  gene symbol: STK19
  hgvsc: ENST00000469907.1:n.808A>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000466132
  gene symbol: STK19
  hgvsc: ENST00000466132.1:n.1434A>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000491861
  gene symbol: STK19
  hgvsc: ENST00000491861.1:n.673A>G
  variant of: http://identifiers.org/hgnc/11398
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13431
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3750
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2458
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln350Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS

6-31948570-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31948570
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31948570
    reference: chr 6
allele count: 1
allele frequency: 1.289756751876596e-5
allele num: 77534
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000492583
  gene symbol: STK19
  hgvsc: ENST00000492583.1:n.1236A>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000454870
  ensembl transcript: ENST00000519179
  gene symbol: STK19
  hgvsc: ENST00000519179.1:c.*394A>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000364482
  ensembl transcript: ENST00000375333
  gene symbol: STK19
  hgvsc: ENST00000375333.2:c.1053A>G
  hgvsp: ENST00000375333.2:c.1053A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000469907
  gene symbol: STK19
  hgvsc: ENST00000469907.1:n.812A>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000418866
  ensembl transcript: ENST00000483801
  gene symbol: STK19
  hgvsc: ENST00000483801.1:c.*394A>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000473983
  gene symbol: STK19
  hgvsc: ENST00000473983.1:n.1680A>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000491861
  gene symbol: STK19
  hgvsc: ENST00000491861.1:n.677A>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000364480
  ensembl transcript: ENST00000375331
  gene symbol: STK19
  hgvsc: ENST00000375331.2:c.1041A>G
  hgvsp: ENST00000375331.2:c.1041A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000490822
  gene symbol: STK19
  hgvsc: ENST00000490822.1:n.403A>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000466132
  gene symbol: STK19
  hgvsc: ENST00000466132.1:n.1438A>G
  variant of: http://identifiers.org/hgnc/11398
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15279
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu351Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

6-31948586-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31948586
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31948586
    reference: chr 6
allele count: 2
allele frequency: 3.077870113881194e-5
allele num: 64980
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000364482
  ensembl transcript: ENST00000375333
  gene symbol: STK19
  hgvsc: ENST00000375333.2:c.1061+8T>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000418866
  ensembl transcript: ENST00000483801
  gene symbol: STK19
  hgvsc: ENST00000483801.1:c.*402+8T>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000490822
  gene symbol: STK19
  hgvsc: ENST00000490822.1:n.411+8T>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000454870
  ensembl transcript: ENST00000519179
  gene symbol: STK19
  hgvsc: ENST00000519179.1:c.*402+8T>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000466132
  gene symbol: STK19
  hgvsc: ENST00000466132.1:n.1446+8T>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000492583
  gene symbol: STK19
  hgvsc: ENST00000492583.1:n.1244+8T>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000491861
  gene symbol: STK19
  hgvsc: ENST00000491861.1:n.685+8T>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000469907
  gene symbol: STK19
  hgvsc: ENST00000469907.1:n.820+8T>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000364480
  ensembl transcript: ENST00000375331
  gene symbol: STK19
  hgvsc: ENST00000375331.2:c.1049+8T>G
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000473983
  gene symbol: STK19
  hgvsc: ENST00000473983.1:n.1688+8T>G
  variant of: http://identifiers.org/hgnc/11398
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 18078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18684
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1061+8T>G
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

9-127076225-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127076225
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127076225
    reference: chr 9
allele count: 2
allele frequency: 1.654341820106871e-5
allele num: 120894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.255G>A
  hgvsp: ENST00000425237.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.357G>A
  hgvsp: ENST00000394199.2:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.255G>A
  hgvsp: ENST00000373603.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.255G>A
  hgvsp: ENST00000373596.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.255G>A
  hgvsp: ENST00000444973.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-7513G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.255G>A
  hgvsp: ENST00000320246.5:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.255G>A
  hgvsp: ENST00000546191.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.330G>A
  hgvsp: ENST00000539416.1:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.255G>A
  hgvsp: ENST00000545174.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.309G>A
  hgvsp: ENST00000540326.1:c.309G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.255G>A
  hgvsp: ENST00000422297.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.357G>A
  hgvsp: ENST00000423785.1:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.357G>A
  hgvsp: ENST00000373600.3:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.255G>A
  hgvsp: ENST00000447379.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys119Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD

9-127076231-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127076231
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127076231
    reference: chr 9
allele count: 24
allele frequency: 1.986557626725822e-4
allele num: 120812
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.261G>A
  hgvsp: ENST00000422297.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.261G>A
  hgvsp: ENST00000545174.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.363G>A
  hgvsp: ENST00000394199.2:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.261G>A
  hgvsp: ENST00000447379.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.363G>A
  hgvsp: ENST00000423785.1:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.261G>A
  hgvsp: ENST00000444973.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.261G>A
  hgvsp: ENST00000546191.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.261G>A
  hgvsp: ENST00000320246.5:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.261G>A
  hgvsp: ENST00000373603.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.336G>A
  hgvsp: ENST00000539416.1:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.261G>A
  hgvsp: ENST00000373596.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.261G>A
  hgvsp: ENST00000425237.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-7507G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.363G>A
  hgvsp: ENST00000373600.3:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.315G>A
  hgvsp: ENST00000540326.1:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg121Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

9-127076240-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127076240
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127076240
    reference: chr 9
allele count: 91
allele frequency: 7.542228189699471e-4
allele num: 120654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.270T>C
  hgvsp: ENST00000422297.1:c.270T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.372T>C
  hgvsp: ENST00000373600.3:c.372T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.270T>C
  hgvsp: ENST00000447379.1:c.270T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.324T>C
  hgvsp: ENST00000540326.1:c.324T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.270T>C
  hgvsp: ENST00000373603.1:c.270T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.270T>C
  hgvsp: ENST00000425237.1:c.270T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.270T>C
  hgvsp: ENST00000545174.1:c.270T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-7498T>C
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.270T>C
  hgvsp: ENST00000546191.1:c.270T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.345T>C
  hgvsp: ENST00000539416.1:c.345T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.270T>C
  hgvsp: ENST00000373596.1:c.270T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.270T>C
  hgvsp: ENST00000444973.1:c.270T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.372T>C
  hgvsp: ENST00000394199.2:c.372T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.270T>C
  hgvsp: ENST00000320246.5:c.270T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.372T>C
  hgvsp: ENST00000423785.1:c.372T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 24893
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys124Cys
num of homozygotes: 2
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-127076243-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127076243
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127076243
    reference: chr 9
allele count: 1
allele frequency: 8.29393713195654e-6
allele num: 120570
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.375C>G
  hgvsp: ENST00000373600.3:c.375C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.273C>G
  hgvsp: ENST00000444973.1:c.273C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-7495C>G
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.273C>G
  hgvsp: ENST00000373596.1:c.273C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.273C>G
  hgvsp: ENST00000373603.1:c.273C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.348C>G
  hgvsp: ENST00000539416.1:c.348C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.273C>G
  hgvsp: ENST00000546191.1:c.273C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.375C>G
  hgvsp: ENST00000394199.2:c.375C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.273C>G
  hgvsp: ENST00000447379.1:c.273C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.273C>G
  hgvsp: ENST00000320246.5:c.273C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.327C>G
  hgvsp: ENST00000540326.1:c.327C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.375C>G
  hgvsp: ENST00000423785.1:c.375C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.273C>G
  hgvsp: ENST00000425237.1:c.273C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.273C>G
  hgvsp: ENST00000422297.1:c.273C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.273C>G
  hgvsp: ENST00000545174.1:c.273C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7100
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val125Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

9-127076252-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127076252
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127076252
    reference: chr 9
allele count: 1
allele frequency: 8.318083513558476e-6
allele num: 120220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.282C>T
  hgvsp: ENST00000546191.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.282C>T
  hgvsp: ENST00000545174.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.357C>T
  hgvsp: ENST00000539416.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.336C>T
  hgvsp: ENST00000540326.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.384C>T
  hgvsp: ENST00000373600.3:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.282C>T
  hgvsp: ENST00000373603.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.384C>T
  hgvsp: ENST00000394199.2:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.282C>T
  hgvsp: ENST00000425237.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.282C>T
  hgvsp: ENST00000422297.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.282C>T
  hgvsp: ENST00000447379.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.282C>T
  hgvsp: ENST00000444973.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-7486C>T
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.384C>T
  hgvsp: ENST00000423785.1:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.282C>T
  hgvsp: ENST00000373596.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.282C>T
  hgvsp: ENST00000320246.5:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile128Ile
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

9-127076254-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127076254
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 127076254
    reference: chr 9
allele count: 1
allele frequency: 8.327365388138501e-6
allele num: 120086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403087
  ensembl transcript: ENST00000425237
  gene symbol: NEK6
  hgvsc: ENST00000425237.1:c.284G>A
  hgvsp: ENSP00000403087.1:p.Gly95Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441469
  ensembl transcript: ENST00000540326
  gene symbol: NEK6
  hgvsc: ENST00000540326.1:c.338G>A
  hgvsp: ENSP00000441469.1:p.Gly113Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000442636
  ensembl transcript: ENST00000545174
  gene symbol: NEK6
  hgvsc: ENST00000545174.1:c.284G>A
  hgvsp: ENSP00000442636.1:p.Gly95Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000399847
  ensembl transcript: ENST00000423785
  gene symbol: NEK6
  hgvsc: ENST00000423785.1:c.386G>A
  hgvsp: ENSP00000399847.1:p.Gly129Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000411401
  ensembl transcript: ENST00000422297
  gene symbol: NEK6
  hgvsc: ENST00000422297.1:c.284G>A
  hgvsp: ENSP00000411401.1:p.Gly95Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000403414
  ensembl transcript: ENST00000447379
  gene symbol: NEK6
  hgvsc: ENST00000447379.1:c.284G>A
  hgvsp: ENSP00000403414.1:p.Gly95Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000405215
  ensembl transcript: ENST00000454453
  gene symbol: NEK6
  hgvsc: ENST00000454453.1:c.91-7484G>A
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000389517
  ensembl transcript: ENST00000444973
  gene symbol: NEK6
  hgvsc: ENST00000444973.1:c.284G>A
  hgvsp: ENSP00000389517.1:p.Gly95Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000441426
  ensembl transcript: ENST00000546191
  gene symbol: NEK6
  hgvsc: ENST00000546191.1:c.284G>A
  hgvsp: ENSP00000441426.1:p.Gly95Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000319734
  ensembl transcript: ENST00000320246
  gene symbol: NEK6
  hgvsc: ENST00000320246.5:c.284G>A
  hgvsp: ENSP00000319734.5:p.Gly95Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362705
  ensembl transcript: ENST00000373603
  gene symbol: NEK6
  hgvsc: ENST00000373603.1:c.284G>A
  hgvsp: ENSP00000362705.1:p.Gly95Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362698
  ensembl transcript: ENST00000373596
  gene symbol: NEK6
  hgvsc: ENST00000373596.1:c.284G>A
  hgvsp: ENSP00000362698.1:p.Gly95Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000439651
  ensembl transcript: ENST00000539416
  gene symbol: NEK6
  hgvsc: ENST00000539416.1:c.359G>A
  hgvsp: ENSP00000439651.1:p.Gly120Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000362702
  ensembl transcript: ENST00000373600
  gene symbol: NEK6
  hgvsc: ENST00000373600.3:c.386G>A
  hgvsp: ENSP00000362702.3:p.Gly129Asp
  variant of: http://identifiers.org/hgnc/7749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119408
  ensembl protein: ENSP00000377749
  ensembl transcript: ENST00000394199
  gene symbol: NEK6
  hgvsc: ENST00000394199.2:c.386G>A
  hgvsp: ENSP00000377749.2:p.Gly129Asp
  variant of: http://identifiers.org/hgnc/7749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly129Asp
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-31948598-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31948598
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31948598
    reference: chr 6
allele count: 1
allele frequency: 1.666111296234588e-5
allele num: 60020
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000466132
  gene symbol: STK19
  hgvsc: ENST00000466132.1:n.1446+20C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000473983
  gene symbol: STK19
  hgvsc: ENST00000473983.1:n.1688+20C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000491861
  gene symbol: STK19
  hgvsc: ENST00000491861.1:n.685+20C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000364482
  ensembl transcript: ENST00000375333
  gene symbol: STK19
  hgvsc: ENST00000375333.2:c.1061+20C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000469907
  gene symbol: STK19
  hgvsc: ENST00000469907.1:n.820+20C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000490822
  gene symbol: STK19
  hgvsc: ENST00000490822.1:n.411+20C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000364480
  ensembl transcript: ENST00000375331
  gene symbol: STK19
  hgvsc: ENST00000375331.2:c.1049+20C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000492583
  gene symbol: STK19
  hgvsc: ENST00000492583.1:n.1244+20C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000454870
  ensembl transcript: ENST00000519179
  gene symbol: STK19
  hgvsc: ENST00000519179.1:c.*402+20C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000418866
  ensembl transcript: ENST00000483801
  gene symbol: STK19
  hgvsc: ENST00000483801.1:c.*402+20C>T
  variant of: http://identifiers.org/hgnc/11398
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9025
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19825
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4968
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4398
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

6-31948610-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31948610
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31948610
    reference: chr 6
allele count: 2
allele frequency: 3.656307129798903e-5
allele num: 54700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000491861
  gene symbol: STK19
  hgvsc: ENST00000491861.1:n.685+32G>A
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000490822
  gene symbol: STK19
  hgvsc: ENST00000490822.1:n.411+32G>A
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000454870
  ensembl transcript: ENST00000519179
  gene symbol: STK19
  hgvsc: ENST00000519179.1:c.*402+32G>A
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000466132
  gene symbol: STK19
  hgvsc: ENST00000466132.1:n.1446+32G>A
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000469907
  gene symbol: STK19
  hgvsc: ENST00000469907.1:n.820+32G>A
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000364480
  ensembl transcript: ENST00000375331
  gene symbol: STK19
  hgvsc: ENST00000375331.2:c.1049+32G>A
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000364482
  ensembl transcript: ENST00000375333
  gene symbol: STK19
  hgvsc: ENST00000375333.2:c.1061+32G>A
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000418866
  ensembl transcript: ENST00000483801
  gene symbol: STK19
  hgvsc: ENST00000483801.1:c.*402+32G>A
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000473983
  gene symbol: STK19
  hgvsc: ENST00000473983.1:n.1688+32G>A
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000492583
  gene symbol: STK19
  hgvsc: ENST00000492583.1:n.1244+32G>A
  variant of: http://identifiers.org/hgnc/11398
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19248
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10892
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4901
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

6-31948865-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31948865
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31948865
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000466132
  gene symbol: STK19
  hgvsc: ENST00000466132.1:n.1531C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000454870
  ensembl transcript: ENST00000519179
  gene symbol: STK19
  hgvsc: ENST00000519179.1:c.*487C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000364480
  ensembl transcript: ENST00000375331
  gene symbol: STK19
  hgvsc: ENST00000375331.2:c.*39C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000492583
  gene symbol: STK19
  hgvsc: ENST00000492583.1:n.1329C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000490822
  gene symbol: STK19
  hgvsc: ENST00000490822.1:n.496C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000364482
  ensembl transcript: ENST00000375333
  gene symbol: STK19
  hgvsc: ENST00000375333.2:c.*39C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204344
  ensembl protein: ENSP00000418866
  ensembl transcript: ENST00000483801
  gene symbol: STK19
  hgvsc: ENST00000483801.1:c.*487C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000491861
  gene symbol: STK19
  hgvsc: ENST00000491861.1:n.770C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000473983
  gene symbol: STK19
  hgvsc: ENST00000473983.1:n.1773C>T
  variant of: http://identifiers.org/hgnc/11398
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204344
  ensembl transcript: ENST00000469907
  gene symbol: STK19
  hgvsc: ENST00000469907.1:n.905C>T
  variant of: http://identifiers.org/hgnc/11398
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4475
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

6-31961797-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31961797
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31961797
    reference: chr 6
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244731
  ensembl protein: ENSP00000396688
  ensembl transcript: ENST00000428956
  gene symbol: C4A
  hgvsc: ENST00000428956.2:c.2452+34T>C
  variant of: http://identifiers.org/hgnc/1323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244731
  ensembl protein: ENSP00000420212
  ensembl transcript: ENST00000498271
  gene symbol: C4A
  hgvsc: ENST00000498271.1:c.2452+34T>C
  variant of: http://identifiers.org/hgnc/1323
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeDepth
all individuals: 4
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 757
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 346
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4473
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3005
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17171
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5099
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 891
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21283
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1664
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 478
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19426
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.638e0

QD
type: SiteQuality
SIO_000300: 1.036e1

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 6.26685e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.221e0

VQSLOD
type: SiteQuality
SIO_000300: -4.269e-1

GenotypeDepth
all individuals: 10
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3223
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 345
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2938
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1653
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4981
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17876
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4884
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2522
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.277044854881267e-5
allele num: 18950
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 1.13e0

InbreedingCoeff
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SIO_000300: -3.31e-2

QD
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VQSLOD
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FS
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MQRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: 7.27e-1

DP
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SIO_000300: 6.16205e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 83

GenotypeQuality
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GenotypeQuality
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variant carriers: 106

Other
type: Population
allele count: 25
allele frequency: 8.169934640522876e-2
allele num: 306
num of homozygotes: 1

East Asian
type: Population
allele count: 136
allele frequency: 1.007407407407407e-1
allele num: 1350
num of homozygotes: 4

African
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allele count: 117
allele frequency: 3.403141361256545e-2
allele num: 3438
num of homozygotes: 1

South Asian
type: Population
allele count: 749
allele frequency: 9.165442976015663e-2
allele num: 8172
num of homozygotes: 57

Latino
type: Population
allele count: 45
allele frequency: 3.548895899053628e-2
allele num: 1268
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 27
allele frequency: 1.252319109461967e-2
allele num: 2156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 716
allele frequency: 5.092460881934566e-2
allele num: 14060
num of homozygotes: 12

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
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InbreedingCoeff
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SIO_000300: -4.4e-3

QD
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VQSLOD
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MQ
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SIO_000300: 6.0e1

FS
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SIO_000300: 0.0e0

DP
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SIO_000300: 5.72081e5

ClippingRankSum
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SIO_000300: 0.0e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.898830320522558e-5
allele num: 52664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4766
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7964
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.167e0

QD
type: SiteQuality
SIO_000300: 9.33e0

InbreedingCoeff
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SIO_000300: -2.9e-3

DP
type: SiteQuality
SIO_000300: 8.76291e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: -1.743e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -1.268e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.96e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.89976822827615e-5
allele num: 52638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4762
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -3.2e-3

QD
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ReadPosRankSum
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SIO_000300: -5.55e-1

MQRankSum
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -2.06e0

DP
type: SiteQuality
SIO_000300: 8.78031e5

VQSLOD
type: SiteQuality
SIO_000300: 1.15e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4900
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.600985221674877e-3
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Other
type: Population
allele count: 1
allele frequency: 1.366120218579235e-3
allele num: 732
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.669590106785072e-5
allele num: 54502
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East Asian
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allele count: 0
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Latino
type: Population
allele count: 1
allele frequency: 1.066098081023454e-4
allele num: 9380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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DP
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -4.44e-1

QD
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SIO_000300: 1.234e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele count: 5
allele frequency: 7.058159232072275e-4
allele num: 7084
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 54916
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Latino
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allele count: 0
allele frequency: 0.0e0
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African
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South Asian
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DP
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 57502
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 13004
num of homozygotes: 0

Latino
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allele frequency: 2.016942315449778e-4
allele num: 9916
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: -1.63e0

FS
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VQSLOD
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SIO_000300: 6.919999999999999e-1

DP
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SIO_000300: 1.132081e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58018
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 12
allele frequency: 1.199280431740955e-3
allele num: 10006
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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SIO_000300: 1.274e1

BaseQRankSum
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VQSLOD
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MQ
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DP
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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SIO_000300: -2.7e-1

InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 6.8e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 59032
num of homozygotes: 0

East Asian
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allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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VQSLOD
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DP
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SIO_000300: 1.185912e6

MQRankSum
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SIO_000300: 4.1e-2

ReadPosRankSum
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SIO_000300: 4.7e-1

MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -2.285e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
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SIO_000300: 5.16e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8786
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.744452687664396e-5
allele num: 59308
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5360
num of homozygotes: 0

MQRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 9.62e-1

DP
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SIO_000300: 1.196872e6

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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GenotypeDepth
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variant carriers: 12

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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num of homozygotes: 0

Latino
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allele frequency: 4.837461300309598e-4
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 6.856416602561958e-4
allele num: 59798
num of homozygotes: 1

South Asian
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East Asian
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num of homozygotes: 0

Other
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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FS
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MQ
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 7.920343969223807e-4
allele num: 8838
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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DP
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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FS
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variant carriers: 534

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3547

GenotypeQuality
all individuals: 538
bin: 4.25e1
variant carriers: 11

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 13

Latino
type: Population
allele count: 136
allele frequency: 1.295484854257954e-2
allele num: 10498
num of homozygotes: 1

East Asian
type: Population
allele count: 743
allele frequency: 9.150246305418719e-2
allele num: 8120
num of homozygotes: 34

African
type: Population
allele count: 973
allele frequency: 1.040641711229947e-1
allele num: 9350
num of homozygotes: 48

Other
type: Population
allele count: 23
allele frequency: 2.811735941320294e-2
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 71
allele frequency: 5.086688637340593e-3
allele num: 13958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1641
allele frequency: 2.695909314933465e-2
allele num: 60870
num of homozygotes: 16

European (Finnish)
type: Population
allele count: 192
allele frequency: 3.447037701974865e-2
allele num: 5570
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-2

MQ
type: SiteQuality
SIO_000300: 6.037e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

FS
type: SiteQuality
SIO_000300: 6.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

DP
type: SiteQuality
SIO_000300: 1.265689e6

QD
type: SiteQuality
SIO_000300: 1.476e1

VQSLOD
type: SiteQuality
SIO_000300: 5.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-2

GenotypeDepth
all individuals: 281
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 154
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4294
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3603
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43918
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5960
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10988
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567447255399856e-5
allele num: 63798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-1

FS
type: SiteQuality
SIO_000300: 5.871e0

MQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.346778e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeDepth
all individuals: 10
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 280
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 154
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39091
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
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variant carriers: 0

GenotypeDepth
all individuals: 524
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variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3196
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44687
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4392
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558312036402169e-5
allele num: 64172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11046
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

DP
type: SiteQuality
SIO_000300: 1.357574e6

QD
type: SiteQuality
SIO_000300: 1.124e1

FS
type: SiteQuality
SIO_000300: 5.942e0

MQRankSum
type: SiteQuality
SIO_000300: 5.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e0

GenotypeDepth
all individuals: 2269
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11817
bin: 2.75e1
variant carriers: 3

GenotypeDepth
all individuals: 2484
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2655
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39097
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3066
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44702
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 231
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4378
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.806684733514002e-4
allele num: 11070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.667371958429274e-5
allele num: 64276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15382
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.63e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.362626e6

QD
type: SiteQuality
SIO_000300: 1.106e1

FS
type: SiteQuality
SIO_000300: 5.078e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.72e-1

GenotypeDepth
all individuals: 20
bin: 7.25e1
variant carriers: 10

GenotypeDepth
all individuals: 2109
bin: 1.25e1
variant carriers: 22

GenotypeDepth
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 6.25e1
variant carriers: 11

GenotypeDepth
all individuals: 5
bin: 8.25e1
variant carriers: 3

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 3

GenotypeDepth
all individuals: 16
bin: 7.75e1
variant carriers: 9

GenotypeDepth
all individuals: 12068
bin: 2.75e1
variant carriers: 92

GenotypeDepth
all individuals: 54
bin: 5.75e1
variant carriers: 21

GenotypeDepth
all individuals: 18
bin: 9.75e1
variant carriers: 10

GenotypeDepth
all individuals: 11
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 347
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4353
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1131
bin: 9.75e1
variant carriers: 562

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2834
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44758
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 712
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1128
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 397
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 224
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 1

Other
type: Population
allele count: 3
allele frequency: 3.480278422273782e-3
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.620453727043572e-3
allele num: 11108
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.293326435592343e-4
allele num: 15464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.309831181727905e-5
allele num: 64448
num of homozygotes: 0

African
type: Population
allele count: 564
allele frequency: 5.670621355318721e-2
allele num: 9946
num of homozygotes: 14

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.48e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

DP
type: SiteQuality
SIO_000300: 1.376743e6

VQSLOD
type: SiteQuality
SIO_000300: 5.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

QD
type: SiteQuality
SIO_000300: 1.347e1

GenotypeDepth
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 317
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12068
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 590
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2576
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
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variant carriers: 0

GenotypeDepth
all individuals: 18
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variant carriers: 0

GenotypeDepth
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 44758
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 655
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4353
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.466632177961717e-5
allele num: 15464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11108
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.48e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.376743e6

QD
type: SiteQuality
SIO_000300: 1.347e1

GenotypeDepth
all individuals: 901
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1389
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1675
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2680
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variant carriers: 0

GenotypeDepth
all individuals: 43
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variant carriers: 0

GenotypeDepth
all individuals: 4
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variant carriers: 0

GenotypeDepth
all individuals: 8
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variant carriers: 0

GenotypeDepth
all individuals: 12
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variant carriers: 0

GenotypeDepth
all individuals: 10
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variant carriers: 0

GenotypeDepth
all individuals: 4
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variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46267
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.535485059730369e-5
allele num: 65126
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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MQ
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ReadPosRankSum
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DP
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InbreedingCoeff
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VQSLOD
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QD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.52114390021296e-5
allele num: 65740
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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QD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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SIO_000300: 8.090000000000001e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.784735812133073e-5
allele num: 10220
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.424111e6

VQSLOD
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InbreedingCoeff
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SIO_000300: -4.0e-4

MQ
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SIO_000300: 6.0e1

MQRankSum
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: 1.84e-1

FS
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SIO_000300: 7.07e-1

ClippingRankSum
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SIO_000300: -3.5e-1

QD
type: SiteQuality
SIO_000300: 1.482e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 2
allele frequency: 1.234263144902493e-4
allele num: 16204
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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FS
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DP
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ClippingRankSum
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MQ
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VQSLOD
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Other
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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European (Finnish)
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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DP
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VQSLOD
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 2.613695765812859e-4
allele num: 11478
num of homozygotes: 0

Other
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South Asian
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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allele num: 66328
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MQ
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QD
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FS
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Other
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 9.043499231302565e-5
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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FS
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MQ
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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East Asian
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allele frequency: 0.0e0
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Other
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African
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South Asian
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ReadPosRankSum
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MQ
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FS
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66450
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Latino
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ClippingRankSum
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QD
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MQ
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VQSLOD
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MQRankSum
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DP
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FS
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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South Asian
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Other
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MQ
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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East Asian
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DP
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ClippingRankSum
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BaseQRankSum
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FS
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QD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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South Asian
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VQSLOD
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ClippingRankSum
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66452
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African
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South Asian
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Other
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MQRankSum
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BaseQRankSum
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MQ
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QD
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InbreedingCoeff
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FS
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VQSLOD
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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DP
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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FS
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MQRankSum
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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South Asian
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African
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East Asian
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European (Non-Finnish)
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MQ
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ReadPosRankSum
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FS
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QD
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DP
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Other
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East Asian
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South Asian
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African
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Latino
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QD
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MQ
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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East Asian
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Other
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VQSLOD
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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DP
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FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 41070
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536003932170066e-5
allele num: 65104
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

VQSLOD
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SIO_000300: 4.77e-1

BaseQRankSum
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ClippingRankSum
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SIO_000300: -1.103e0

MQRankSum
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QD
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MQ
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ReadPosRankSum
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SIO_000300: 1.1e0

InbreedingCoeff
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SIO_000300: 1.1e-3

FS
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DP
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64770
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.837044892188053e-5
allele num: 11316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.807351940095303e-5
allele num: 14690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
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SIO_000300: 5.9e-2

QD
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SIO_000300: 1.067e1

BaseQRankSum
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SIO_000300: -1.709e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: 1.95e0

VQSLOD
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SIO_000300: 1.14e-1

ReadPosRankSum
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SIO_000300: -8.67e-1

DP
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SIO_000300: 1.262483e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54526068547764e-5
allele num: 64714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: -1.162e0

ReadPosRankSum
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SIO_000300: 2.36e0

DP
type: SiteQuality
SIO_000300: 1.247907e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.199999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.063e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5851
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.107230525432682e-5
allele num: 64366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.970089730807577e-5
allele num: 10030
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14346
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

QD
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SIO_000300: 1.265e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

FS
type: SiteQuality
SIO_000300: 9.12e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

DP
type: SiteQuality
SIO_000300: 1.225817e6

GenotypeDepth
all individuals: 22580
bin: 2.25e1
variant carriers: 124

GenotypeDepth
all individuals: 12058
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variant carriers: 88

GenotypeDepth
all individuals: 5
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variant carriers: 2

GenotypeDepth
all individuals: 82
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variant carriers: 9

GenotypeDepth
all individuals: 20
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GenotypeDepth
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variant carriers: 5

GenotypeDepth
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variant carriers: 20

GenotypeDepth
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variant carriers: 45

GenotypeQuality
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GenotypeQuality
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variant carriers: 561

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 1

African
type: Population
allele count: 553
allele frequency: 5.525579536370903e-2
allele num: 10008
num of homozygotes: 13

South Asian
type: Population
allele count: 2
allele frequency: 1.395673412421493e-4
allele num: 14330
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.464203233256351e-3
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.088714694537763e-4
allele num: 64296
num of homozygotes: 0

Latino
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allele count: 20
allele frequency: 1.777145903678692e-3
allele num: 11254
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.48e-1

InbreedingCoeff
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SIO_000300: 3.62e-2

VQSLOD
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MQRankSum
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DP
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SIO_000300: 1.221515e6

ReadPosRankSum
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SIO_000300: 4.23e-1

QD
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SIO_000300: 1.483e1

BaseQRankSum
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SIO_000300: 3.06e-1

ClippingRankSum
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SIO_000300: -3.4e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558312036402169e-5
allele num: 64172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
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MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
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SIO_000300: 1.06e0

FS
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 6.22e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

BaseQRankSum
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SIO_000300: 5.32e-1

InbreedingCoeff
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SIO_000300: -2.0e-3

ReadPosRankSum
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SIO_000300: 6.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.191793e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 9.043226623259179e-5
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num of homozygotes: 0

East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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FS
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MQRankSum
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QD
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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South Asian
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allele frequency: 6.147037128104254e-5
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European (Non-Finnish)
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Other
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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Other
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Latino
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
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DP
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ClippingRankSum
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SIO_000300: -1.035e0

MQRankSum
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66364
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Other
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African
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East Asian
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South Asian
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InbreedingCoeff
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DP
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ReadPosRankSum
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QD
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MQ
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FS
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Other
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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MQ
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 9.645061728395061e-5
allele num: 10368
num of homozygotes: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 9
allele frequency: 1.35179789119529e-4
allele num: 66578
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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InbreedingCoeff
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SIO_000300: -2.0e-4

VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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QD
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FS
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SIO_000300: 1.107e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.506805275966709e-5
allele num: 66566
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South Asian
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allele frequency: 3.523265702830762e-3
allele num: 16462
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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MQ
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DP
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ClippingRankSum
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SIO_000300: -9.69e-1

ReadPosRankSum
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SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 5.31e-1

BaseQRankSum
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SIO_000300: 8.4e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4816
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 51664
num of homozygotes: 0

East Asian
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Latino
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allele frequency: 9.209987720016373e-4
allele num: 9772
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African
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allele frequency: 6.25e-4
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Other
type: Population
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MQ
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SIO_000300: 3.779e1

FS
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
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SIO_000300: -3.61e-1

QD
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SIO_000300: 1.253e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9032
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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South Asian
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allele frequency: 2.36630383341221e-4
allele num: 8452
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East Asian
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DP
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SIO_000300: 1.010781e6

MQ
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SIO_000300: 4.055e1

MQRankSum
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SIO_000300: 1.47e0

ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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SIO_000300: -1.599e0

InbreedingCoeff
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SIO_000300: -7.3e-3

QD
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5326
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.212291491526924e-5
allele num: 45202
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 554
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3994
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

ReadPosRankSum
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VQSLOD
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.581044806937848e-5
allele num: 38744
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 2.337540906965872e-4
allele num: 4278
num of homozygotes: 0

Other
type: Population
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DP
type: SiteQuality
SIO_000300: 7.11305e5

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
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MQ
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QD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66524
num of homozygotes: 0

South Asian
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Other
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European (Finnish)
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MQRankSum
type: SiteQuality
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ClippingRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.459791209121815e-4
allele num: 66478
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Other
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allele frequency: 0.0e0
allele num: 900
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Latino
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allele frequency: 8.69414014953921e-5
allele num: 11502
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ReadPosRankSum
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SIO_000300: 4.8e-1

MQ
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MQRankSum
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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SIO_000300: -2.33e-1

InbreedingCoeff
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SIO_000300: -3.0e-4

FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16434
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African
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allele frequency: 8.607350096711798e-3
allele num: 10340
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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FS
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DP
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MQ
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 66374
num of homozygotes: 0

Other
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ReadPosRankSum
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SIO_000300: 6.5e-2

FS
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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QD
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MQ
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BaseQRankSum
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DP
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SIO_000300: 1.622057e6

MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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DP
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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MQ
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FS
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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Other
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InbreedingCoeff
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MQRankSum
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QD
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MQ
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VQSLOD
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BaseQRankSum
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FS
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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Other
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East Asian
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African
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DP
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ClippingRankSum
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FS
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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BaseQRankSum
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
allele num: 2664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.0790273556231e-5
allele num: 32900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.69e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.82941e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.27e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 2.983e1

VQSLOD
type: SiteQuality
SIO_000300: -5.078e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3910
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 2.0273e4

QD
type: SiteQuality
SIO_000300: 1.149e1

MQ
type: SiteQuality
SIO_000300: 3.229e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.345e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0