http://identifiers.org/exac.variant/9-126164224-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164224
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164224
    reference: chr 9
allele count: 2
allele frequency: 1.648886177387175e-5
allele num: 121294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-33G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+1457G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+1457G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-33G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+1457G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-33G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+1457G>T
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18795
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4705
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5243
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-126164225-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164225
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164225
    reference: chr 9
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-34A>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+1456A>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+1456A>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-34A>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-34A>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+1456A>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+1456A>T
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12574
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4705
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3706
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6956
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5246
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3607
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

9-126164228-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164228
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164228
    reference: chr 9
allele count: 7
allele frequency: 5.77072101037081e-5
allele num: 121302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+1453T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-37T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-37T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-37T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+1453T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+1453T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+1453T>C
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8761
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6877
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3694
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12987
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS

9-126164229-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164229
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164229
    reference: chr 9
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+1452A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+1452A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+1452A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-38A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+1452A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-38A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-38A>G
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5492
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3692
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3606
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5241
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

9-126164241-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164241
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164241
    reference: chr 9
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-50A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+1440A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-50A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+1440A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+1440A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-50A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+1440A>G
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3559
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

9-126164242-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164242
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164242
    reference: chr 9
allele count: 3
allele frequency: 2.475410918212423e-5
allele num: 121192
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-51C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+1439C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-51C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+1439C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+1439C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-51C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+1439C>G
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11763
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8788
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18792
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

9-126164759-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164759
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164759
    reference: chr 9
allele count: 2
allele frequency: 1.658154805332626e-5
allele num: 120616
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-568A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-568A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+922A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-568A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+922A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+922A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+922A>G
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29893
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2605
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

9-126164770-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164770
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164770
    reference: chr 9
allele count: 4
allele frequency: 3.315924728508663e-5
allele num: 120630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+911G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+911G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+911G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+911G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-579G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-579G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-579G>A
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24387
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13293
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5793
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3772
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP

9-126164780-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164780
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164780
    reference: chr 9
allele count: 3
allele frequency: 2.485913158766987e-5
allele num: 120680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-589C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-589C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+901C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-589C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+901C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+901C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+901C>G
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

9-126164781-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164781
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164781
    reference: chr 9
allele count: 9
allele frequency: 7.457368708880898e-5
allele num: 120686
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+900T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+900T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+900T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+900T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-590T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-590T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-590T>C
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13341
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5780
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3749
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

9-126164786-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164786
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164786
    reference: chr 9
allele count: 1
allele frequency: 8.285553309249991e-6
allele num: 120692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-595G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-595G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+895G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+895G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+895G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+895G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-595G>A
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24780
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2495
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-126164792-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164792
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164792
    reference: chr 9
allele count: 1
allele frequency: 8.285278716776033e-6
allele num: 120696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-601C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-601C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+889C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+889C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-601C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+889C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+889C>T
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32686
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5775
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

9-126164794-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164794
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164794
    reference: chr 9
allele count: 1
allele frequency: 8.285827919925758e-6
allele num: 120688
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-603G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+887G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+887G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-603G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-603G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+887G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+887G>C
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-126164794-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164794
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164794
    reference: chr 9
allele count: 1
allele frequency: 8.285827919925758e-6
allele num: 120688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+887G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-603G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+887G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-603G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-603G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+887G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+887G>A
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9215
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32724
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3718
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/9-126164800-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164800
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164800
    reference: chr 9
allele count: 1
allele frequency: 8.284180528862085e-6
allele num: 120712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-609G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-609G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+881G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+881G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+881G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-609G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+881G>T
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32984
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3703
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

9-126164800-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164800
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164800
    reference: chr 9
allele count: 1
allele frequency: 8.284180528862085e-6
allele num: 120712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-609G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-609G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-609G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+881G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+881G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+881G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+881G>C
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32984
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5773
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9200
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

9-126164801-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164801
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164801
    reference: chr 9
allele count: 79
allele frequency: 6.544936373276776e-4
allele num: 120704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+880G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+880G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+880G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+880G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-610G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-610G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-610G>C
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13368
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 25000
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3693
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2479
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33044
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-126164835-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164835
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164835
    reference: chr 9
allele count: 1
allele frequency: 8.289124668435012e-6
allele num: 120640
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+846T>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-644T>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+846T>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207991
  ensembl transcript: ENST00000385256
  gene symbol: MIR601
  hgvsc: ENST00000385256.1:n.48T>G
  variant of: http://identifiers.org/hgnc/32857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+846T>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-644T>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+846T>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-644T>G
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3073
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5732
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9182
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

9-126164843-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164843
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164843
    reference: chr 9
allele count: 4
allele frequency: 3.316584581198282e-5
allele num: 120606
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-652A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-652A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+838A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+838A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207991
  ensembl transcript: ENST00000385256
  gene symbol: MIR601
  hgvsc: ENST00000385256.1:n.40A>G
  variant of: http://identifiers.org/hgnc/32857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+838A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+838A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-652A>G
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10471
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3066
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3676
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum

9-126164851-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164851
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164851
    reference: chr 9
allele count: 1
allele frequency: 8.29393713195654e-6
allele num: 120570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-660G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+830G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000207991
  ensembl transcript: ENST00000385256
  gene symbol: MIR601
  hgvsc: ENST00000385256.1:n.32G>C
  variant of: http://identifiers.org/hgnc/32857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+830G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-660G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+830G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+830G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-660G>C
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: mature miRNA
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

9-126164851-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164851
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164851
    reference: chr 9
allele count: 1
allele frequency: 8.29393713195654e-6
allele num: 120570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+830G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-660G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+830G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+830G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000207991
  ensembl transcript: ENST00000385256
  gene symbol: MIR601
  hgvsc: ENST00000385256.1:n.32G>A
  variant of: http://identifiers.org/hgnc/32857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+830G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-660G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-660G>A
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: mature miRNA
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

9-126164861-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164861
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164861
    reference: chr 9
allele count: 1
allele frequency: 8.299030673217368e-6
allele num: 120496
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-670A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-670A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+820A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+820A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+820A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+820A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000207991
  ensembl transcript: ENST00000385256
  gene symbol: MIR601
  hgvsc: ENST00000385256.1:n.22A>G
  variant of: http://identifiers.org/hgnc/32857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-670A>G
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: mature miRNA
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

9-126164871-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164871
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164871
    reference: chr 9
allele count: 4
allele frequency: 3.322535094276933e-5
allele num: 120390
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207991
  ensembl transcript: ENST00000385256
  gene symbol: MIR601
  hgvsc: ENST00000385256.1:n.12G>A
  variant of: http://identifiers.org/hgnc/32857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-680G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-680G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+810G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-680G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+810G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+810G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+810G>A
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32873
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9091
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/9-126164877-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164877
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164877
    reference: chr 9
allele count: 1
allele frequency: 8.311861025683651e-6
allele num: 120310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+804G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+804G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-686G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+804G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-686G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207991
  ensembl transcript: ENST00000385256
  gene symbol: MIR601
  hgvsc: ENST00000385256.1:n.6G>T
  variant of: http://identifiers.org/hgnc/32857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-686G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+804G>T
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13306
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9057
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32771
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5719
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

9-126164883-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164883
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164883
    reference: chr 9
allele count: 3
allele frequency: 2.495259007885018e-5
allele num: 120228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+798G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-692G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+798G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+798G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-692G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+798G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-692G>A
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32447
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

9-126164893-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164893
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164893
    reference: chr 9
allele count: 1
allele frequency: 8.338475393159114e-6
allele num: 119926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-702C>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-702C>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+788C>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-702C>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+788C>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+788C>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+788C>A
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13047
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3516
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

9-126164905-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164905
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164905
    reference: chr 9
allele count: 2
allele frequency: 1.673752217721688e-5
allele num: 119492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-714C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+776C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-714C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-714C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+776C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+776C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+776C>T
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8032
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5697
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

9-126164918-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164918
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164918
    reference: chr 9
allele count: 2
allele frequency: 1.683048337148243e-5
allele num: 118832
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-727G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+763G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-727G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+763G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+763G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-727G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+763G>C
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9946
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19580
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-126164918-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164918
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164918
    reference: chr 9
allele count: 101
allele frequency: 8.499394102598626e-4
allele num: 118832
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+763G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+763G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-727G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+763G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-727G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-727G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+763G>A
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9118
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9946
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16454
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5771
  bin: 9.75e1
  variant carriers: 99
genotype quality: GenotypeQuality
  all individuals: 19580
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3060
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

9-126164919-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164919
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164919
    reference: chr 9
allele count: 8
allele frequency: 6.745703829873349e-5
allele num: 118594
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+762C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+762C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+762C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-728C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-728C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+762C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-728C>T
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10441
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16048
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8820
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8319
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3387
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2294
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2235
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3919
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

9-126164920-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164920
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164920
    reference: chr 9
allele count: 2
allele frequency: 1.684721262867059e-5
allele num: 118714
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+761G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+761G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+761G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+761G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-729G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-729G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-729G>C
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11551
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14614
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3033
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5677
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4768
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16620
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4173
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

9-126164931-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126164931
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126164931
    reference: chr 9
allele count: 1
allele frequency: 8.49314603115286e-6
allele num: 117742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1488-740C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1578-740C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+750C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+750C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+750C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+750C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.173-740C>T
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7175
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5815
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10349
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5095
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2990
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5676
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5337
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2192
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

9-126165630-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165630
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165630
    reference: chr 9
allele count: 1
allele frequency: 9.359264736162327e-6
allele num: 106846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.172+51G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+51G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+51G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+51G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1487+51G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1577+51G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+51G>A
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16564
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4431
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6425
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5627
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6952
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS

9-126165633-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165633
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165633
    reference: chr 9
allele count: 6
allele frequency: 5.60925901688387e-5
allele num: 106966
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1577+48G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+48G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1487+48G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+48G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+48G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+48G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.172+48G>A
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14472
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6272
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6929
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3565
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6847
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5534
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9832
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3345
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-126165641-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165641
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165641
    reference: chr 9
allele count: 1
allele frequency: 9.269730621628136e-6
allele num: 107878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+40G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1487+40G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+40G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.172+40G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1577+40G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+40G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+40G>T
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15301
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2385
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4429
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7663
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3951
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-126165646-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165646
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165646
    reference: chr 9
allele count: 2
allele frequency: 1.853190267044717e-5
allele num: 107922
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.172+35A>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+35A>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+35A>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1487+35A>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1577+35A>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+35A>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+35A>C
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19901
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4902
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5887
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3635
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

9-126165647-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165647
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165646
    reference: chr 9
allele count: 1
allele frequency: 9.170273640965446e-6
allele num: 109048
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+33delG
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+33delG
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1487+33delG
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.172+33delG
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+33delG
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+33delG
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1577+33delG
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5723
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2807
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: TC
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-126165653-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165653
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165653
    reference: chr 9
allele count: 5
allele frequency: 4.543389368468878e-5
allele num: 110050
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1487+28T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+28T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+28T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+28T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.172+28T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+28T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1577+28T>C
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25416
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10401
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6731
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4437
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3248
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

9-126165659-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165659
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165658
    reference: chr 9
allele count: 1
allele frequency: 8.94774516821761e-6
allele num: 111760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.172+21delC
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1487+21delC
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+21delC
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+21delC
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+21delC
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+21delC
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1577+21delC
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7841
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5785
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4433
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3297
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: AG
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-126165666-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165666
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165666
    reference: chr 9
allele count: 1
allele frequency: 8.78827292860407e-6
allele num: 113788
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.172+15T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+15T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+15T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+15T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+15T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1577+15T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1487+15T>C
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4540
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

9-126165671-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165671
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165671
    reference: chr 9
allele count: 1
allele frequency: 8.692477529945585e-6
allele num: 115042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+10G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+10G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1487+10G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.172+10G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+10G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1577+10G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+10G>A
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4433
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3708
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

9-126165673-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165673
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165673
    reference: chr 9
allele count: 1
allele frequency: 8.656209965028912e-6
allele num: 115524
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1577+8T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1481+8T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1487+8T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.172+8T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1577+8T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1440+8T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.803+8T>C
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34272
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39434
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3555
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1577+8T>C
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

9-126165687-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165687
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165687
    reference: chr 9
allele count: 1
allele frequency: 8.466826971924002e-6
allele num: 118108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1481C>T
  hgvsp: ENSP00000377763.2:p.Pro494Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1475C>T
  hgvsp: ENSP00000377766.3:p.Pro492Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1571C>T
  hgvsp: ENSP00000362722.3:p.Pro524Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.797C>T
  hgvsp: ENSP00000437457.1:p.Pro266Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1434C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1571C>T
  hgvsp: ENSP00000362727.2:p.Pro524Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.166C>T
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro524Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

9-126165689-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165689
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165689
    reference: chr 9
allele count: 1
allele frequency: 8.453799983092399e-6
allele num: 118290
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1432C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1479C>G
  hgvsp: ENSP00000377763.2:p.Ser493Arg
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1473C>G
  hgvsp: ENSP00000377766.3:p.Ser491Arg
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1569C>G
  hgvsp: ENSP00000362727.2:p.Ser523Arg
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.795C>G
  hgvsp: ENSP00000437457.1:p.Ser265Arg
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1569C>G
  hgvsp: ENSP00000362722.3:p.Ser523Arg
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.164C>G
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11267
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4432
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser523Arg
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

9-126165692-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165692
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165692
    reference: chr 9
allele count: 2
allele frequency: 1.685999460480173e-5
allele num: 118624
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1566G>A
  hgvsp: ENST00000373624.2:c.1566G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1429G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1476G>A
  hgvsp: ENST00000394215.2:c.1476G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1566G>A
  hgvsp: ENST00000373620.3:c.1566G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.792G>A
  hgvsp: ENST00000542603.1:c.792G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1470G>A
  hgvsp: ENST00000394219.3:c.1470G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.161G>A
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4434
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43527
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro522Pro
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

9-126165693-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165693
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165693
    reference: chr 9
allele count: 4
allele frequency: 3.368761474843773e-5
allele num: 118738
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1565C>A
  hgvsp: ENSP00000362727.2:p.Pro522Gln
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.160C>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1469C>A
  hgvsp: ENSP00000377766.3:p.Pro490Gln
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.791C>A
  hgvsp: ENSP00000437457.1:p.Pro264Gln
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1565C>A
  hgvsp: ENSP00000362722.3:p.Pro522Gln
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1475C>A
  hgvsp: ENSP00000377763.2:p.Pro492Gln
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1428C>A
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36598
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43813
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro522Gln
num of homozygotes: 1
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP

9-126165701-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165701
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165701
    reference: chr 9
allele count: 3
allele frequency: 2.514331690636629e-5
allele num: 119316
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1557G>A
  hgvsp: ENST00000373624.2:c.1557G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.783G>A
  hgvsp: ENST00000542603.1:c.783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1467G>A
  hgvsp: ENST00000394215.2:c.1467G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.152G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1461G>A
  hgvsp: ENST00000394219.3:c.1461G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1420G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1557G>A
  hgvsp: ENST00000373620.3:c.1557G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12198
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr519Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

9-126165702-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165702
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165702
    reference: chr 9
allele count: 193
allele frequency: 1.616659127841718e-3
allele num: 119382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1460C>T
  hgvsp: ENSP00000377766.3:p.Thr487Met
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1419C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1556C>T
  hgvsp: ENSP00000362727.2:p.Thr519Met
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1466C>T
  hgvsp: ENSP00000377763.2:p.Thr489Met
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.151C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.782C>T
  hgvsp: ENSP00000437457.1:p.Thr261Met
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1556C>T
  hgvsp: ENSP00000362722.3:p.Thr519Met
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12229
  bin: 2.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 36502
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44134
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr519Met
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-126165705-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165705
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165705
    reference: chr 9
allele count: 1
allele frequency: 8.368340892734607e-6
allele num: 119498
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1457G>A
  hgvsp: ENSP00000377766.3:p.Arg486Lys
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.148G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1553G>A
  hgvsp: ENSP00000362727.2:p.Arg518Lys
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1463G>A
  hgvsp: ENSP00000377763.2:p.Arg488Lys
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1416G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1553G>A
  hgvsp: ENSP00000362722.3:p.Arg518Lys
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.779G>A
  hgvsp: ENSP00000437457.1:p.Arg260Lys
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg518Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

9-126165709-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165709
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165709
    reference: chr 9
allele count: 1
allele frequency: 8.355754608198667e-6
allele num: 119678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1549C>T
  hgvsp: ENSP00000362722.3:p.Arg517Trp
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1459C>T
  hgvsp: ENSP00000377763.2:p.Arg487Trp
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1412C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1549C>T
  hgvsp: ENSP00000362727.2:p.Arg517Trp
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1453C>T
  hgvsp: ENSP00000377766.3:p.Arg485Trp
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.144C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.775C>T
  hgvsp: ENSP00000437457.1:p.Arg259Trp
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44718
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg517Trp
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

9-126165712-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165712
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165712
    reference: chr 9
allele count: 4
allele frequency: 3.339344152808389e-5
allele num: 119784
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1546G>C
  hgvsp: ENSP00000362727.2:p.Gly516Arg
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1456G>C
  hgvsp: ENSP00000377763.2:p.Gly486Arg
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.772G>C
  hgvsp: ENSP00000437457.1:p.Gly258Arg
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1450G>C
  hgvsp: ENSP00000377766.3:p.Gly484Arg
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1546G>C
  hgvsp: ENSP00000362722.3:p.Gly516Arg
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1409G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.141G>C
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44990
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4328
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly516Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

9-126165718-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165718
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165718
    reference: chr 9
allele count: 1
allele frequency: 8.340144451301897e-6
allele num: 119902
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1540G>C
  hgvsp: ENSP00000362722.3:p.Val514Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1540G>C
  hgvsp: ENSP00000362727.2:p.Val514Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1450G>C
  hgvsp: ENSP00000377763.2:p.Val484Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.766G>C
  hgvsp: ENSP00000437457.1:p.Val256Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1444G>C
  hgvsp: ENSP00000377766.3:p.Val482Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.135G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1403G>C
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4425
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val514Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

9-126165719-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165719
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165719
    reference: chr 9
allele count: 1
allele frequency: 8.341118377152009e-6
allele num: 119888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.134A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.765A>G
  hgvsp: ENST00000542603.1:c.765A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1539A>G
  hgvsp: ENST00000373620.3:c.1539A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1539A>G
  hgvsp: ENST00000373624.2:c.1539A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1443A>G
  hgvsp: ENST00000394219.3:c.1443A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1449A>G
  hgvsp: ENST00000394215.2:c.1449A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1402A>G
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala513Ala
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

9-126165721-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165721
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165721
    reference: chr 9
allele count: 1
allele frequency: 8.342649291709075e-6
allele num: 119866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.132G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1441G>A
  hgvsp: ENSP00000377766.3:p.Ala481Thr
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1400G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1537G>A
  hgvsp: ENSP00000362727.2:p.Ala513Thr
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1447G>A
  hgvsp: ENSP00000377763.2:p.Ala483Thr
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.763G>A
  hgvsp: ENSP00000437457.1:p.Ala255Thr
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1537G>A
  hgvsp: ENSP00000362722.3:p.Ala513Thr
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala513Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

9-126165722-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165722
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165722
    reference: chr 9
allele count: 1
allele frequency: 8.340422692622062e-6
allele num: 119898
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1536C>G
  hgvsp: ENSP00000362722.3:p.Ile512Met
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1440C>G
  hgvsp: ENSP00000377766.3:p.Ile480Met
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1446C>G
  hgvsp: ENSP00000377763.2:p.Ile482Met
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1399C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1536C>G
  hgvsp: ENSP00000362727.2:p.Ile512Met
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.131C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.762C>G
  hgvsp: ENSP00000437457.1:p.Ile254Met
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4317
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile512Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

9-126165742-TAAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165742
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165739
    reference: chr 9
allele count: 1
allele frequency: 8.370162046337218e-6
allele num: 119472
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1423_1425delGTT
  hgvsp: ENSP00000377763.2:p.Val475del
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1513_1515delGTT
  hgvsp: ENSP00000362727.2:p.Val505del
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.108_110delGTT
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.739_741delGTT
  hgvsp: ENSP00000437457.1:p.Val247del
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1376_1378delGTT
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1513_1515delGTT
  hgvsp: ENSP00000362722.3:p.Val505del
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1417_1419delGTT
  hgvsp: ENSP00000377766.3:p.Val473del
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44383
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val505del
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: TAAC
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

9-126165749-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165749
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165749
    reference: chr 9
allele count: 1
allele frequency: 8.408448809363649e-6
allele num: 118928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1372T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1419T>C
  hgvsp: ENST00000394215.2:c.1419T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1413T>C
  hgvsp: ENST00000394219.3:c.1413T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.735T>C
  hgvsp: ENST00000542603.1:c.735T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.104T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1509T>C
  hgvsp: ENST00000373620.3:c.1509T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1509T>C
  hgvsp: ENST00000373624.2:c.1509T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34258
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43403
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4424
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His503His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

9-126165753-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165753
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165753
    reference: chr 9
allele count: 1
allele frequency: 8.452942469273554e-6
allele num: 118302
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.100C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1415C>G
  hgvsp: ENSP00000377763.2:p.Pro472Arg
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1409C>G
  hgvsp: ENSP00000377766.3:p.Pro470Arg
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1368C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.731C>G
  hgvsp: ENSP00000437457.1:p.Pro244Arg
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1505C>G
  hgvsp: ENSP00000362727.2:p.Pro502Arg
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1505C>G
  hgvsp: ENSP00000362722.3:p.Pro502Arg
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro502Arg
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ

9-126165756-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165756
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165756
    reference: chr 9
allele count: 2
allele frequency: 1.695116369738783e-5
allele num: 117986
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1406G>A
  hgvsp: ENSP00000377766.3:p.Arg469His
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.97G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1412G>A
  hgvsp: ENSP00000377763.2:p.Arg471His
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.728G>A
  hgvsp: ENSP00000437457.1:p.Arg243His
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000491650
  gene symbol: DENND1A
  hgvsc: ENST00000491650.1:n.840G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1502G>A
  hgvsp: ENSP00000362727.2:p.Arg501His
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1502G>A
  hgvsp: ENSP00000362722.3:p.Arg501His
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1365G>A
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32795
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg501His
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

9-126165757-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165757
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165757
    reference: chr 9
allele count: 4
allele frequency: 3.391094984570518e-5
allele num: 117956
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.96C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1501C>T
  hgvsp: ENSP00000362722.3:p.Arg501Cys
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.727C>T
  hgvsp: ENSP00000437457.1:p.Arg243Cys
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1501C>T
  hgvsp: ENSP00000362727.2:p.Arg501Cys
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1405C>T
  hgvsp: ENSP00000377766.3:p.Arg469Cys
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000491650
  gene symbol: DENND1A
  hgvsc: ENST00000491650.1:n.839C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1411C>T
  hgvsp: ENSP00000377763.2:p.Arg471Cys
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1364C>T
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32781
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13003
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg501Cys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

9-126165759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165759
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165759
    reference: chr 9
allele count: 2
allele frequency: 1.698513800424628e-5
allele num: 117750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1403C>T
  hgvsp: ENSP00000377766.3:p.Pro468Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1499C>T
  hgvsp: ENSP00000362727.2:p.Pro500Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000491650
  gene symbol: DENND1A
  hgvsc: ENST00000491650.1:n.837C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.725C>T
  hgvsp: ENSP00000437457.1:p.Pro242Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1409C>T
  hgvsp: ENSP00000377763.2:p.Pro470Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1499C>T
  hgvsp: ENSP00000362722.3:p.Pro500Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1362C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.94C>T
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12949
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4424
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3489
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro500Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/9-126165765-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165765
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165765
    reference: chr 9
allele count: 15
allele frequency: 1.28618466181918e-4
allele num: 116624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1403G>T
  hgvsp: ENSP00000377763.2:p.Arg468Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1493G>T
  hgvsp: ENSP00000362722.3:p.Arg498Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1493G>T
  hgvsp: ENSP00000362727.2:p.Arg498Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.719G>T
  hgvsp: ENSP00000437457.1:p.Arg240Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000491650
  gene symbol: DENND1A
  hgvsc: ENST00000491650.1:n.831G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1397G>T
  hgvsp: ENSP00000377766.3:p.Arg466Leu
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1356G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.88G>T
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30679
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12646
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4437
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 3792
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 3.25e1
  variant carriers: 1
hgvs: p.Arg498Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

9-126165765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165765
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165765
    reference: chr 9
allele count: 3
allele frequency: 2.572369323638359e-5
allele num: 116624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1493G>A
  hgvsp: ENSP00000362722.3:p.Arg498His
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.719G>A
  hgvsp: ENSP00000437457.1:p.Arg240His
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1403G>A
  hgvsp: ENSP00000377763.2:p.Arg468His
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1397G>A
  hgvsp: ENSP00000377766.3:p.Arg466His
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1493G>A
  hgvsp: ENSP00000362727.2:p.Arg498His
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1356G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000491650
  gene symbol: DENND1A
  hgvsc: ENST00000491650.1:n.831G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.88G>A
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30679
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38794
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg498His
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

9-126165766-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165766
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165766
    reference: chr 9
allele count: 1
allele frequency: 8.601558602418759e-6
allele num: 116258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1402C>T
  hgvsp: ENSP00000377763.2:p.Arg468Cys
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.87C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000491650
  gene symbol: DENND1A
  hgvsc: ENST00000491650.1:n.830C>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1492C>T
  hgvsp: ENSP00000362727.2:p.Arg498Cys
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1396C>T
  hgvsp: ENSP00000377766.3:p.Arg466Cys
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1492C>T
  hgvsp: ENSP00000362722.3:p.Arg498Cys
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.718C>T
  hgvsp: ENSP00000437457.1:p.Arg240Cys
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1355C>T
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5065
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg498Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ

9-126165767-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165767
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165767
    reference: chr 9
allele count: 1
allele frequency: 8.595495960116898e-6
allele num: 116340
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1491G>C
  hgvsp: ENST00000373624.2:c.1491G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.717G>C
  hgvsp: ENST00000542603.1:c.717G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000491650
  gene symbol: DENND1A
  hgvsc: ENST00000491650.1:n.829G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1491G>C
  hgvsp: ENST00000373620.3:c.1491G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1395G>C
  hgvsp: ENST00000394219.3:c.1395G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1401G>C
  hgvsp: ENST00000394215.2:c.1401G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1354G>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.86G>C
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4422
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1491G>C
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-126165782-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165782
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165781
    reference: chr 9
allele count: 2
allele frequency: 1.774780370929097e-5
allele num: 112690
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1489-14delT
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1399-14delT
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.70delT
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1393-14delT
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1489-14delT
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.715-14delT
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1352-14delT
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000491650
  gene symbol: DENND1A
  hgvsc: ENST00000491650.1:n.827-14delT
  variant of: http://identifiers.org/hgnc/29324
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22798
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2754
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29460
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2966
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: CA
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

9-126165785-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165785
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165785
    reference: chr 9
allele count: 2
allele frequency: 1.784312326029548e-5
allele num: 112088
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000491650
  gene symbol: DENND1A
  hgvsc: ENST00000491650.1:n.827-16C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.68C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1393-16C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.715-16C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1489-16C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1399-16C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1489-16C>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1352-16C>G
  variant of: http://identifiers.org/hgnc/29324
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21257
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11155
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/9-126165793-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165793
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165793
    reference: chr 9
allele count: 3
allele frequency: 2.723459883435917e-5
allele num: 110154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1352-24G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.60G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.715-24G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1489-24G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1399-24G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1393-24G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1489-24G>T
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000491650
  gene symbol: DENND1A
  hgvsc: ENST00000491650.1:n.827-24G>T
  variant of: http://identifiers.org/hgnc/29324
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8151
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15420
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4456
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

9-126165796-CAAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165796
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165793
    reference: chr 9
allele count: 1
allele frequency: 9.132586896564322e-6
allele num: 109498
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1352-30_1352-28delCTT
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000491650
  gene symbol: DENND1A
  hgvsc: ENST00000491650.1:n.827-30_827-28delCTT
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.54_56delCTT
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.715-30_715-28delCTT
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1399-30_1399-28delCTT
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1489-30_1489-28delCTT
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1393-30_1393-28delCTT
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1489-30_1489-28delCTT
  variant of: http://identifiers.org/hgnc/29324
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18527
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: CAAG
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

9-126165821-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126165821
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126165821
    reference: chr 9
allele count: 1
allele frequency: 1.006846556584776e-5
allele num: 99320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000491650
  gene symbol: DENND1A
  hgvsc: ENST00000491650.1:n.827-52T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1393-52T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000475421
  gene symbol: DENND1A
  hgvsc: ENST00000475421.1:n.32T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1352-52T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.715-52T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1489-52T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1489-52T>C
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1399-52T>C
  variant of: http://identifiers.org/hgnc/29324
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7432
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3759
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8532
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10235
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6659
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

9-126176852-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126176852
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126176852
    reference: chr 9
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362720
  ensembl transcript: ENST00000373618
  gene symbol: DENND1A
  hgvsc: ENST00000373618.1:c.*7A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362727
  ensembl transcript: ENST00000373624
  gene symbol: DENND1A
  hgvsc: ENST00000373624.2:c.1489-11083A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377766
  ensembl transcript: ENST00000394219
  gene symbol: DENND1A
  hgvsc: ENST00000394219.3:c.1393-11083A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000491650
  gene symbol: DENND1A
  hgvsc: ENST00000491650.1:n.827-11083A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000497135
  gene symbol: DENND1A
  hgvsc: ENST00000497135.1:n.671-2744A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1399-11083A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000437457
  ensembl transcript: ENST00000542603
  gene symbol: DENND1A
  hgvsc: ENST00000542603.1:c.715-11083A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1352-11083A>G
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000362722
  ensembl transcript: ENST00000373620
  gene symbol: DENND1A
  hgvsc: ENST00000373620.3:c.1489-11083A>G
  variant of: http://identifiers.org/hgnc/29324
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

9-126176910-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126176910
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 126176910
    reference: chr 9
allele count: 105
allele frequency: 6.373679737768605e-3
allele num: 16474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl protein: ENSP00000377763
  ensembl transcript: ENST00000394215
  gene symbol: DENND1A
  hgvsc: ENST00000394215.2:c.1399-11141G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000473039
  gene symbol: DENND1A
  hgvsc: ENST00000473039.1:n.1352-11141G>A
  variant of: http://identifiers.org/hgnc/29324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119522
  ensembl transcript: ENST00000491650
  gene symbol: DENND1A
  hgvsc: ENST00000491650.1:n.827-11141G>A
  variant of: http://identifiers.org/hgnc/29324
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 1
reference allele: C

GenotypeQuality
all individuals: 169
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13572
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6960
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3709
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3608
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212415130940834e-4
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.73e0

FS
type: SiteQuality
SIO_000300: 4.391e0

VQSLOD
type: SiteQuality
SIO_000300: 7.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 2.434925e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.308e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2419
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18794
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.43348e6

MQRankSum
type: SiteQuality
SIO_000300: 9.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.28e-1

QD
type: SiteQuality
SIO_000300: 1.558e1

GenotypeQuality
all individuals: 182
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5238
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3607
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4694
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2413
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18794
bin: 9.75e1
variant carriers: 7

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.996311512279965e-5
allele num: 66694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.78e0

QD
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SIO_000300: 1.413e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 2.428838e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4692
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.959e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.42715e6

MQRankSum
type: SiteQuality
SIO_000300: -1.323e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 2.7387e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.163e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

QD
type: SiteQuality
SIO_000300: 5.26e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501095799933952e-5
allele num: 66618
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.209e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.40962e6

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.264e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.502341217433065e-5
allele num: 66632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.53e1

MQRankSum
type: SiteQuality
SIO_000300: 8.01e-1

DP
type: SiteQuality
SIO_000300: 2.409459e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.937233630375823e-4
allele num: 10324
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.294e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

DP
type: SiteQuality
SIO_000300: 1.849398e6

MQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.047046018020197e-5
allele num: 66148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.493e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.038e0

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e0

FS
type: SiteQuality
SIO_000300: 5.44e-1

DP
type: SiteQuality
SIO_000300: 1.85654e6

GenotypeQuality
all individuals: 9239
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.598752598752599e-4
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.54e-1

FS
type: SiteQuality
SIO_000300: 3.991e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.115e0

DP
type: SiteQuality
SIO_000300: 1.861044e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

East Asian
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allele count: 9
allele frequency: 1.042632066728452e-3
allele num: 8632
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

QD
type: SiteQuality
SIO_000300: 1.276e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66186
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510893542441e-5
allele num: 66186
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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allele num: 16490
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
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ClippingRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2493
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66184
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.864124e6

FS
type: SiteQuality
SIO_000300: 6.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 9.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.028e0

GenotypeQuality
all individuals: 98
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5774
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1477
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2493
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5109391998066e-5
allele num: 66184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 6.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.028e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.96e-1

DP
type: SiteQuality
SIO_000300: 1.864124e6

GenotypeQuality
all individuals: 3103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2486
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510619656182966e-5
allele num: 66198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.58e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

VQSLOD
type: SiteQuality
SIO_000300: 7.19e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

DP
type: SiteQuality
SIO_000300: 1.865197e6

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3703
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2486
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66198
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.19e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

MQ
type: SiteQuality
SIO_000300: 5.943e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 1.865197e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 164
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9190
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5804
bin: 9.75e1
variant carriers: 78

GenotypeQuality
all individuals: 1468
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3094
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.597852441981296e-4
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.938735944164405e-4
allele num: 10316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.539951573849879e-4
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 71
allele frequency: 1.072604767803728e-3
allele num: 66194
num of homozygotes: 1

QD
type: SiteQuality
SIO_000300: 1.254e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.361e0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 1.866932e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3678
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 2464
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33257
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511213201958532e-5
allele num: 66172
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.973e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.864877e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.252e0

MQRankSum
type: SiteQuality
SIO_000300: -2.33e-1

QD
type: SiteQuality
SIO_000300: 8.27e0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5731
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 33291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 9161
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variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.470615455807496e-4
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511487303506651e-5
allele num: 66160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.94e-1

QD
type: SiteQuality
SIO_000300: 1.302e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.05e-1

DP
type: SiteQuality
SIO_000300: 1.864598e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.342e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 8.02e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: -1.035e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 3052
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3664
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66138
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.99e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

FS
type: SiteQuality
SIO_000300: 1.339e0

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.863905e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

GenotypeQuality
all individuals: 5726
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3052
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.863905e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.99e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 1.339e0

GenotypeQuality
all individuals: 365
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
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variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 33201
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5722
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2458
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3658
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3047
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51290508033526e-5
allele num: 66098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.78e-1

FS
type: SiteQuality
SIO_000300: 2.483e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

DP
type: SiteQuality
SIO_000300: 1.862137e6

QD
type: SiteQuality
SIO_000300: 1.668e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 124
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5722
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3647
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.771350400625366e-5
allele num: 10234
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514004542013626e-5
allele num: 66050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

FS
type: SiteQuality
SIO_000300: 5.123e0

DP
type: SiteQuality
SIO_000300: 1.85889e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.8e-1

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3630
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3023
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2444
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66012
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.786651008025054e-5
allele num: 10218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.643e-1

FS
type: SiteQuality
SIO_000300: 8.239000000000001e0

DP
type: SiteQuality
SIO_000300: 1.856238e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.135e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

QD
type: SiteQuality
SIO_000300: 9.59e0

GenotypeQuality
all individuals: 219
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3589
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9004
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2434
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5717
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2988
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.54793523740222e-5
allele num: 65964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

QD
type: SiteQuality
SIO_000300: 1.424e1

FS
type: SiteQuality
SIO_000300: 5.036e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.919999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.92e-1

DP
type: SiteQuality
SIO_000300: 1.851713e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.23e0

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31473
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8779
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2910
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5707
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 460
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519572088499878e-5
allele num: 65808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

QD
type: SiteQuality
SIO_000300: 1.031e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e-1

DP
type: SiteQuality
SIO_000300: 1.834303e6

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3366
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28235
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2721
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variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.050361467833938e-5
allele num: 65566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.780543e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 4.977e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.449e1

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3845
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2257
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3060
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5771
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 170
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2354
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.224739742804654e-4
allele num: 16330
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.95e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

QD
type: SiteQuality
SIO_000300: 1.406e1

DP
type: SiteQuality
SIO_000300: 1.656429e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

GenotypeQuality
all individuals: 2354
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3845
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4020
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2039
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.290072297654734e-4
allele num: 11342
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.982160555004955e-4
allele num: 10090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 93
allele frequency: 1.426730486008836e-3
allele num: 65184
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

VQSLOD
type: SiteQuality
SIO_000300: 5.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

DP
type: SiteQuality
SIO_000300: 1.656429e6

QD
type: SiteQuality
SIO_000300: 1.406e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

GenotypeQuality
all individuals: 5974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2313
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2998
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
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variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5680
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1047
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
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variant carriers: 0

GenotypeQuality
all individuals: 19097
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.976190476190476e-4
allele num: 10080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.537944454272068e-4
allele num: 11306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537326282130119e-5
allele num: 65048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.292e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

DP
type: SiteQuality
SIO_000300: 1.647269e6

MQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.695e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2248
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3388
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
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variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5596
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.225640397107489e-4
allele num: 16318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

DP
type: SiteQuality
SIO_000300: 1.626864e6

QD
type: SiteQuality
SIO_000300: 9.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.371e0

GenotypeQuality
all individuals: 1044
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4375
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
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variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2908
bin: 7.75e1
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GenotypeQuality
all individuals: 741
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16236
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.547843853512058e-5
allele num: 64606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.059e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

MQ
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SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.595213e6

QD
type: SiteQuality
SIO_000300: 1.596e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8980
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5600
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.015022330491271e-4
allele num: 9852
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59410
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South Asian
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allele frequency: 0.0e0
allele num: 14652
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

ReadPosRankSum
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.25e-1

BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 1.246083e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -6.131e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 8.407883231317684e-5
allele num: 59468
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9008
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5624
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7556
num of homozygotes: 0

Latino
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allele frequency: 1.011531458628363e-4
allele num: 9886
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ReadPosRankSum
type: SiteQuality
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FS
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SIO_000300: 2.079e0

DP
type: SiteQuality
SIO_000300: 1.252196e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.667667267026883e-5
allele num: 59964
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.18e-1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.873e0

DP
type: SiteQuality
SIO_000300: 1.301499e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.95e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7710
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60058
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.106194690265487e-4
allele num: 9040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.805054151624549e-4
allele num: 5540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.335911e6

QD
type: SiteQuality
SIO_000300: 1.357e1

FS
type: SiteQuality
SIO_000300: 2.398e0

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.769e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.19e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14842
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5744
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60626
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 9.881422924901186e-5
allele num: 10120
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.344482e6

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.126e1

QD
type: SiteQuality
SIO_000300: 1.621e1

MQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14898
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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East Asian
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allele frequency: 6.366182836771072e-4
allele num: 7854
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10244
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61208
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.1e-1

BaseQRankSum
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QD
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VQSLOD
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MQRankSum
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MQ
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InbreedingCoeff
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FS
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 1.243781094527363e-4
allele num: 8040
num of homozygotes: 0

European (Finnish)
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Other
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FS
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MQRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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DP
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VQSLOD
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QD
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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African
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East Asian
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South Asian
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European (Finnish)
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Other
type: Population
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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FS
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Other
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Latino
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African
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East Asian
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South Asian
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allele num: 15314
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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DP
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QD
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQ
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 4.25e1
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GenotypeQuality
all individuals: 340
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10946
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.516356053694774e-5
allele num: 15346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.615e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 1.528348e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 2.076e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 484
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GenotypeQuality
all individuals: 4434
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65338
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.349206349206349e-5
allele num: 15750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.077e0

QD
type: SiteQuality
SIO_000300: 1.296e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.579748e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.345e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.12e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167133520074697e-4
allele num: 8568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65442
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

FS
type: SiteQuality
SIO_000300: 1.744e0

QD
type: SiteQuality
SIO_000300: 8.369999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

DP
type: SiteQuality
SIO_000300: 1.58344e6

GenotypeQuality
all individuals: 1700
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 723
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GenotypeQuality
all individuals: 445
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.048222886057428e-5
allele num: 65612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.590851e6

VQSLOD
type: SiteQuality
SIO_000300: -7.289e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.216e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

QD
type: SiteQuality
SIO_000300: 6.39e0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 490
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 724
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variant carriers: 0

GenotypeQuality
all individuals: 148
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variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.987676406281057e-4
allele num: 10062
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.045252451428223e-5
allele num: 65676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.402e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-2

QD
type: SiteQuality
SIO_000300: 1.536e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.75e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.165e0

DP
type: SiteQuality
SIO_000300: 1.593235e6

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 486
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variant carriers: 0

GenotypeQuality
all individuals: 43958
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.639915522703273e-4
allele num: 11364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15960
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 7.886e0

QD
type: SiteQuality
SIO_000300: 1.011e1

VQSLOD
type: SiteQuality
SIO_000300: -2.763e-1

DP
type: SiteQuality
SIO_000300: 1.603169e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

GenotypeQuality
all individuals: 4250
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 481
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4585
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variant carriers: 193

GenotypeQuality
all individuals: 1257
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

African
type: Population
allele count: 178
allele frequency: 1.75715695952616e-2
allele num: 10130
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.136363636363636e-3
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.031497256494983e-5
allele num: 65974
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.055594651653765e-3
allele num: 11368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.610985e6

VQSLOD
type: SiteQuality
SIO_000300: 5.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.267e1

MQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.08e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4295
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

DP
type: SiteQuality
SIO_000300: 1.605735e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.42e-1

FS
type: SiteQuality
SIO_000300: 9.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.476e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4427
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513042425709617e-5
allele num: 66092
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

DP
type: SiteQuality
SIO_000300: 1.609703e6

QD
type: SiteQuality
SIO_000300: 1.65e1

GenotypeQuality
all individuals: 1256
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 483
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GenotypeQuality
all individuals: 167
bin: 3.75e1
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GenotypeQuality
all individuals: 720
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GenotypeQuality
all individuals: 158
bin: 4.75e1
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GenotypeQuality
all individuals: 4427
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 90
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.048509042521019e-5
allele num: 66132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16074
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.351e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.275e0

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.74e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.612126e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511350240304688e-5
allele num: 66166
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.614538e6

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
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FS
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SIO_000300: 2.097e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.62e0

VQSLOD
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SIO_000300: 2.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
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allele frequency: 9.790483649892304e-5
allele num: 10214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16106
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66158
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
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BaseQRankSum
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SIO_000300: -1.284e0

MQRankSum
type: SiteQuality
SIO_000300: -6.57e-1

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.971e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.344e0

QD
type: SiteQuality
SIO_000300: 8.25e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.792401096748923e-5
allele num: 10212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

FS
type: SiteQuality
SIO_000300: 5.27e-1

QD
type: SiteQuality
SIO_000300: 1.162e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 1.615067e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.04e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511350240304688e-5
allele num: 66166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.615299e6

FS
type: SiteQuality
SIO_000300: 6.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.86e-1

QD
type: SiteQuality
SIO_000300: 1.352e1

MQRankSum
type: SiteQuality
SIO_000300: 4.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 872
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516116316443798e-5
allele num: 65958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.747e1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.42e-1

QD
type: SiteQuality
SIO_000300: 1.676e1

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-1

DP
type: SiteQuality
SIO_000300: 1.608295e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.785e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169043722235212e-4
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15954
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65702
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.597716e6

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.434e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.13e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.172607879924953e-4
allele num: 8528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65374
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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num of homozygotes: 0

BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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SIO_000300: -3.13e-1

ClippingRankSum
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MQRankSum
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DP
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.853e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.316321374431532e-5
allele num: 15832
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MQRankSum
type: SiteQuality
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ClippingRankSum
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DP
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BaseQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533883486210388e-5
allele num: 65194
num of homozygotes: 0

African
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allele count: 3
allele frequency: 3.001801080648389e-4
allele num: 9994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.174e0

MQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

QD
type: SiteQuality
SIO_000300: 1.346e1

DP
type: SiteQuality
SIO_000300: 1.579412e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 41050
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.265662574357676e-4
allele num: 15802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.573867e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.62e0

QD
type: SiteQuality
SIO_000300: 1.283e1

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

GenotypeQuality
all individuals: 405
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 38794
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.709048221058335e-4
allele num: 11074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.860292065854339e-4
allele num: 64506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.132e1

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

DP
type: SiteQuality
SIO_000300: 1.552849e6

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.030160736861116e-5
allele num: 11074
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.011531458628363e-4
allele num: 9886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550243388211949e-5
allele num: 64506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.552849e6

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-2

QD
type: SiteQuality
SIO_000300: 1.132e1

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11034
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.196744853997128e-4
allele num: 8356
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 1.546411e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.36e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-2

FS
type: SiteQuality
SIO_000300: 6.959e0

MQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

QD
type: SiteQuality
SIO_000300: 1.541e1

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 470
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11040
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.013993104846887e-4
allele num: 9862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15652
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 1.544687e6

VQSLOD
type: SiteQuality
SIO_000300: -1.066e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
SIO_000300: 7.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.88e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.209551625637899e-5
allele num: 62314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

FS
type: SiteQuality
SIO_000300: 7.724e0

DP
type: SiteQuality
SIO_000300: 1.439352e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.036e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.332e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.095996646405366e-4
allele num: 9542
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

QD
type: SiteQuality
SIO_000300: 1.156e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.41599e6

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.323e0

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

MQ
type: SiteQuality
SIO_000300: 5.895e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.927402930162276e-5
allele num: 60884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.166e0

MQRankSum
type: SiteQuality
SIO_000300: -5.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.17e0

FS
type: SiteQuality
SIO_000300: 5.365e0

DP
type: SiteQuality
SIO_000300: 1.332162e6

QD
type: SiteQuality
SIO_000300: 1.05e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeQuality
all individuals: 241
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 433
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4419
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GenotypeQuality
all individuals: 280
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.652073352056831e-5
allele num: 60530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7800
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

MQ
type: SiteQuality
SIO_000300: 5.245e1

VQSLOD
type: SiteQuality
SIO_000300: 9.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 1.302686e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 2.773e1

GenotypeQuality
all individuals: 4821
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5596
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2554
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4419
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2739
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14082
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.170138076293003e-4
allele num: 8546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54896
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

VQSLOD
type: SiteQuality
SIO_000300: -4.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

MQ
type: SiteQuality
SIO_000300: 5.811e1

MQRankSum
type: SiteQuality
SIO_000300: 6.08e-1

DP
type: SiteQuality
SIO_000300: 1.192833e6

QD
type: SiteQuality
SIO_000300: 1.463e1

GenotypeQuality
all individuals: 201
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4365
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5334
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.69e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.94e-1

DP
type: SiteQuality
SIO_000300: 3.67967e5

FS
type: SiteQuality
SIO_000300: 2.636e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.225e1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0